mRNA_Ecto-sp13_S_contig8484.19879.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8484.19879.1
Unique NamemRNA_Ecto-sp13_S_contig8484.19879.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Match: D7FKN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI)

HSP 1 Score: 729 bits (1883), Expect = 3.820e-259
Identity = 384/428 (89.72%), Postives = 395/428 (92.29%), Query Frame = 1 
Query:    1 TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWNGSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCFRCHSGVLIAAVGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGNLAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHIRVGNITQRRLARDKTGAHARSMYSSSSL 1284
            TSTTEAS+EK DSNGTSA+KP DLGG ETGSTAGDGHGSSLAVPAP +MA LLPCLSSNTRL++ EE DASPER+SRDRAMSSAAS RKSPPG  M  PTTDLVFVLSVAVQDSP CQRLVLKAGGVAAMS  LQHLVSRVKQEAGSRW+G AEDCSDRYARLAETCLRVMEYLG VERGRRRL RGGSVEIAISTIRCFRCHSGVL AA GLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKG EMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPG+KHIPGWTVSEEERL TEKALETAEVAASNWTPYNLATFMGTMRSQHQL+IGNLAYYHFFRVVSEAGLLPHP+EDVHDWRQRLRR           YEDERHIRVGNITQRRLARDKTGAHARS+YSSSSL
Sbjct:  307 TSTTEASAEKVDSNGTSAMKPLDLGGPETGSTAGDGHGSSLAVPAPPSMANLLPCLSSNTRLEEREE-DASPERKSRDRAMSSAASARKSPPGSHMNVPTTDLVFVLSVAVQDSPVCQRLVLKAGGVAAMSATLQHLVSRVKQEAGSRWDGGAEDCSDRYARLAETCLRVMEYLGCVERGRRRLVRGGSVEIAISTIRCFRCHSGVLTAATGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGKKHIPGWTVSEEERLNTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHPNEDVHDWRQRLRR-----------YEDERHIRVGNITQRRLARDKTGAHARSLYSSSSL 722
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BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Match: A0A6H5JF41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE)

HSP 1 Score: 597 bits (1539), Expect = 1.110e-206
Identity = 337/459 (73.42%), Postives = 352/459 (76.69%), Query Frame = 1 
Query:    1 TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWNGSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCFR-CHSGV-LIAAVGLLLLLS-------VSPEGRGRIL----------------------KARGFRVVFEAMQRLVGNDLVQVKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGNLAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHIRVGNITQRRLARDKTGAHARSMYSSSSL 1284
            TST EAS+EKFDSNGTSAVKPP LGG ETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLD EEE DASPERQ RDR MSSAASTRKSP G  +K PTTDLVFVLSVA+QD+PECQRLVLKAGGVAAMST LQHL+SRVKQ AGSRW+ S EDCSD YARLAE CLRVME+LGRVERGRRRLERGG VEIAISTIRCFR CH G      VG L   +           G G I                       +ARGFRVVFEAMQRLVGNDLVQVKG EMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQL++GN+                                  +L      YEDERHIRVGNITQRRLARDKTGAHARS+YSSS+L
Sbjct:  319 TSTMEASAEKFDSNGTSAVKPPGLGGPETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDGEEEEDASPERQRRDRVMSSAASTRKSPSGSPLKLPTTDLVFVLSVAMQDTPECQRLVLKAGGVAAMSTTLQHLISRVKQGAGSRWDRSEEDCSDSYARLAEMCLRVMEHLGRVERGRRRLERGGYVEIAISTIRCFRGCHRGRDRFRIVGKLWPCAEHTRQPRARSSGGGSIFFCTCDILSTRRRLLYLHRCCPSQARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQVGNM----------------------------------LLADRCHGYEDERHIRVGNITQRRLARDKTGAHARSLYSSSTL 743
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN6_ECTSI3.820e-25989.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF41_9PHAE1.110e-20673.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8484contigEcto-sp13_S_contig8484:3464..6850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1287
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-09_000900.1
Cds size1287
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8484.19879.1prot_Ecto-sp13_S_contig8484.19879.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8484 3464..6850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464118.487296-CDS-Ecto-sp13_S_contig8484:3463..35721681464118.487296-CDS-Ecto-sp13_S_contig8484:3463..3572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 3464..3572 -
1681464118.5009205-CDS-Ecto-sp13_S_contig8484:3944..40811681464118.5009205-CDS-Ecto-sp13_S_contig8484:3944..4081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 3945..4081 -
1681464118.5117776-CDS-Ecto-sp13_S_contig8484:4367..45001681464118.5117776-CDS-Ecto-sp13_S_contig8484:4367..4500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 4368..4500 -
1681464118.5261214-CDS-Ecto-sp13_S_contig8484:4672..47821681464118.5261214-CDS-Ecto-sp13_S_contig8484:4672..4782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 4673..4782 -
1681464118.5361202-CDS-Ecto-sp13_S_contig8484:5200..53111681464118.5361202-CDS-Ecto-sp13_S_contig8484:5200..5311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 5201..5311 -
1681464118.5458386-CDS-Ecto-sp13_S_contig8484:5864..59491681464118.5458386-CDS-Ecto-sp13_S_contig8484:5864..5949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 5865..5949 -
1681464118.5569255-CDS-Ecto-sp13_S_contig8484:6248..68501681464118.5569255-CDS-Ecto-sp13_S_contig8484:6248..6850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8484 6249..6850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8484.19879.1

>prot_Ecto-sp13_S_contig8484.19879.1 ID=prot_Ecto-sp13_S_contig8484.19879.1|Name=mRNA_Ecto-sp13_S_contig8484.19879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=429bp
TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMA
KLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPT
TDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWN
GSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCF
RCHSGVLIAAVGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQ
VKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKH
IPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGN
LAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHI
RVGNITQRRLARDKTGAHARSMYSSSSL*
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mRNA from alignment at Ecto-sp13_S_contig8484:3464..6850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8484.19879.1 ID=mRNA_Ecto-sp13_S_contig8484.19879.1|Name=mRNA_Ecto-sp13_S_contig8484.19879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8484:3464..6850- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATCGACCACGGAAGCGTCTTCTGAAAAGTTCGACAGCAACGGCACGTC
GGCGGTGAAGCCCCCTGACCTTGGTGGATCTGAAACAGGATCAACAGCAG
GTGATGGCCATGGCTCGTCTTTAGCAGTCCCCGCACCGTCAACGATGGCC
AAACTGCTGCCATGCCTATCAAGCAACACGAGGTTAGATGATGAAGAAGA
AGGAGATGCTAGCCCGGAGAGACAAAGTCGCGATCGGGCCATGTCGTCAG
CAGCTTCAACGCGGAAAAGTCCGCCCGGGCCTCAAATGAAAGCTCCGACG
ACGGATCTAGTCTTCGTCCTTTCGGTTGCCGTGCAGGACAGCCCTGAGTG
CCAGCGTCTCGTCCTCAAGGCGGGAGGCGTGGCCGCCATGTCCACCGCGC
TGCAGCATCTCGTTTCAAGAGTGAAGCAAGAAGCGGGGTCAAGGTGGAAC
GGAAGCGCAGAGGATTGCAGCGACAGATACGCTCGGTTGGCGGAGACGTG
TCTGAGAGTTATGGAATACCTTGGTCGCGTCGAGCGGGGGCGGCGGCGGC
TGGAAAGAGGGGGCTCCGTGGAGATTGCCATTTCGACCATCCGCTGCTTC
AGGTGTGTCCAAGCCGGACGCCGAACACCGCAGCACCAATGCGTCATAGG
CACTCGCGGGATGCAGAAACAGAAGGTTTCGGGGGTTGGCATAGGGTTTA
GGATGTCGTCGTCCTTTCTTTGTGCTTAGAGAAGCAACCTGCGCGGTACC
GTCCTAGGTTTGCGGATAGCTTCAACTACCCTCCCCAGGGAACGTGAGGG
TTGGATCAGACCGACCACCTCCGGAAAAAAGTACAACAGTCTCAAGAAAC
AATGCAACTCACTCTTCGCTGCGTTCGCATGCCCGATATCGAAAACGGCA
GGTGCCACAGCGGTGTCCTAATCGCCGCCGTCGGACTGCTACTTCTCTTG
AGCGTCTCGCCGGAAGGGCGCGGTCGGATACTGAAGGTATTGAGTTATGG
TGCAGCTCTCGCCAGCACACGAGTGTGCATTATTACTGTAGTGCGCCTCA
GTGTCGTGCATGCGAACACCTGGCGACATAGACGAACAGGTTGGCAGTTT
GCACTCCACAACGTTCGGCAGGTAATTTCCTGAGCGTTCAATCGTTGAAC
CTCGAGGCTGTACATAACGTAGTGAATTTAGGGGTCACCCTCTTGAGGAC
TCACCTTACGTGCTCTCCCTAGAGGGGCTCACCTCTCTGTAGGGGCTGAC
CTCCCTCAAGGGCCTCACAATTTGTTTTCGGTATTCAGCATTACGAGGCT
TGATGCTCGGTATAAGTCCCGATTCAGAGCATCAAGACATGCTTCTCGGT
ATCACTCCCAGAGGGGTTGCCACCGTGGATGCGATCGGTTTCGAATCGTT
GGGAAACTATGGCCATGTGCGGAGCACACTCGTCAATCGCACGCCGGGTC
GAGCGGCGGCGGGGGCATTTTTTCTGTGCGTGTGACATACTGTCAACCAG
GCGGGTTCTGCTGTACTTGCATCGTTGTTGCCGTTCCAGGCGCGTGGATT
TCGTGTAGTGTTCGAAGCGATGCAGAGGCTGGTCGGGAACGACTTGGTGC
AGGTCAAGGGCACCGAGATGCTTCAGACCTTGATCAACGAAGAGCCACAG
GTGGGTGCTAGGATACCAAGAATCCAAAGCCGACGGCTAAAAGTTCTGTC
GAACACACTCGTGTGTAGAAAATGTAGAGTCTTGGCGGTGTCTCGGTTTC
GTCTACAGAATTGGTGTTGACTCTCGTATCATTCGCCGTGCATAGTCGTA
CCTCATTTCACCTAGACTGTTTTCACCTTTTGCCGTTAGGTTCAGCACAT
CTTCATCGCGTGCTTGCGACTTGTTGTGAAAACCTGTTGCCAACCCCGAG
CCGACCCTTCTACAGCCGACAACAGGGACTACCATACCAAAAACCCATAG
CAAACAATTATTTAGCGATGCAGTGAACCGTCGAGCCCACTTTGTTCCTG
TGTGTTGGGTCGGCCACAGTCGGCCCGAGTTGGCATAAACTTGATATGGT
GAAGCTCTGCCAACGCAGGCGAGGCGAGAAATGGACAGTATCAAGGGGGG
TTGGCAGTGGCTGTGCCAGGGGACCTCGGGCGGTGACGCCTTGATCCGCT
ACGCACCGGGCGAGAAGCACATACCTGGGTGAGAAACTCTCTTCGCAATG
CAGATGCAGTACGTTGACGTTTACGCCATGAAATAATGAGCAGCAGGAGA
AGAGTCCCACACTCTCGTTCATTTCTTTTCCGTGCACTAGCATGACCTCG
TTCTGTTTCTTATTTCACCCCGCCCCCCTTTCTCGCATGACGTGACGTAG
GTGGACCGTGAGTGAGGAGGAACGACTAACCACGGAGAAGGCGCTGGAGA
CAGCGGAGGTGGCCGCCTCCAACTGGACGCCGTACAACCTCGCAACGTTC
ATGGGAACCATGCGCAGCCAACACCAGCTAGAGGTAGGGAACATGCTGCA
GATCGGTGTCACTAGTAGGGATTTGTGTTCTACATTCGGTTGTCTACGGG
GATAGTCTGTAAAATCATTGTAAAGTGAGCATCCCCGCAGGATTTCACTC
GCTGATGCTGGTTGTTCTTATGCGATGAACTTTTTTCGAAACTTTCCACA
TCTCTTCTTCTGCGGAGTGAACCCCGTCGATGACATCACTTTCGCACAAT
TATTTCTCTTCATTAATGCTGCCATTACAATTGCATTTCTGCCGCACATA
CTACTGTTTGTGTTCCCAGATCGGCAATCTAGCGTACTACCACTTTTTCC
GAGTGGTGAGCGAGGCGGGTCTGCTGCCGCACCCACACGAAGACGTCCAC
GATTGGCGCCAACGACTGAGGAGGCAAGATACCATACTACCACAGAGCTT
CAGACGGTGTTTTGTCTACTCAAGGTTCCACGAAAAACTTTCCTCCCAGT
GGACGTGATCGGTCGTGAATAACATTTTCTCGACTCGTGTTCGGGTGCTA
TTTTGTGGAGCTTCACGAATGGACTGTTCTCAACACAAATGTCGGCCATA
TGACAGTAACATCGCGTAGCCGCTTGCATGACATCGGACTGCTCTGGACG
CAATAGGGAGCCTTTAGACCAGGTTACGGTCCAAAGCCTATGATGGCCAC
TAAGCGACCGCGGTCCCTTACCCATCGTGCTCAGCCGAGGTCTACATGAC
CTTCGCATATCGATCGAAAGTGAAGACCGGTGTATTACGATGGTGATGAT
CTCTATCTCTGATTTCGGACGACGACAGATACGAGGACGAAAGGCACATC
CGGGTCGGCAACATCACGCAAAGACGGCTGGCCAGAGACAAGACCGGGGC
GCACGCCAGATCAATGTACTCTTCCTCGTCTCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8484:3464..6850-

>mRNA_Ecto-sp13_S_contig8484.19879.1 ID=mRNA_Ecto-sp13_S_contig8484.19879.1|Name=mRNA_Ecto-sp13_S_contig8484.19879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8484:3464..6850- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATCGACCACGGAAGCGTCTTCTGAAAAGTTCGACAGCAACGGCACGTC
GGCGGTGAAGCCCCCTGACCTTGGTGGATCTGAAACAGGATCAACAGCAG
GTGATGGCCATGGCTCGTCTTTAGCAGTCCCCGCACCGTCAACGATGGCC
AAACTGCTGCCATGCCTATCAAGCAACACGAGGTTAGATGATGAAGAAGA
AGGAGATGCTAGCCCGGAGAGACAAAGTCGCGATCGGGCCATGTCGTCAG
CAGCTTCAACGCGGAAAAGTCCGCCCGGGCCTCAAATGAAAGCTCCGACG
ACGGATCTAGTCTTCGTCCTTTCGGTTGCCGTGCAGGACAGCCCTGAGTG
CCAGCGTCTCGTCCTCAAGGCGGGAGGCGTGGCCGCCATGTCCACCGCGC
TGCAGCATCTCGTTTCAAGAGTGAAGCAAGAAGCGGGGTCAAGGTGGAAC
GGAAGCGCAGAGGATTGCAGCGACAGATACGCTCGGTTGGCGGAGACGTG
TCTGAGAGTTATGGAATACCTTGGTCGCGTCGAGCGGGGGCGGCGGCGGC
TGGAAAGAGGGGGCTCCGTGGAGATTGCCATTTCGACCATCCGCTGCTTC
AGGTGCCACAGCGGTGTCCTAATCGCCGCCGTCGGACTGCTACTTCTCTT
GAGCGTCTCGCCGGAAGGGCGCGGTCGGATACTGAAGGCGCGTGGATTTC
GTGTAGTGTTCGAAGCGATGCAGAGGCTGGTCGGGAACGACTTGGTGCAG
GTCAAGGGCACCGAGATGCTTCAGACCTTGATCAACGAAGAGCCACAGGC
GAGGCGAGAAATGGACAGTATCAAGGGGGGTTGGCAGTGGCTGTGCCAGG
GGACCTCGGGCGGTGACGCCTTGATCCGCTACGCACCGGGCGAGAAGCAC
ATACCTGGGTGGACCGTGAGTGAGGAGGAACGACTAACCACGGAGAAGGC
GCTGGAGACAGCGGAGGTGGCCGCCTCCAACTGGACGCCGTACAACCTCG
CAACGTTCATGGGAACCATGCGCAGCCAACACCAGCTAGAGATCGGCAAT
CTAGCGTACTACCACTTTTTCCGAGTGGTGAGCGAGGCGGGTCTGCTGCC
GCACCCACACGAAGACGTCCACGATTGGCGCCAACGACTGAGGAGGCAAG
ATACCATACTACCACAGAGCTTCAGACGATACGAGGACGAAAGGCACATC
CGGGTCGGCAACATCACGCAAAGACGGCTGGCCAGAGACAAGACCGGGGC
GCACGCCAGATCAATGTACTCTTCCTCGTCTCTGTGA
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