prot_Ecto-sp13_S_contig8484.19879.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8484.19879.1
Unique Name	prot_Ecto-sp13_S_contig8484.19879.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	429

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Match: D7FKN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI)

HSP 1 Score: 729 bits (1883), Expect = 3.820e-259
Identity = 384/428 (89.72%), Postives = 395/428 (92.29%), Query Frame = 0

Query:    1 TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWNGSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCFRCHSGVLIAAVGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGNLAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHIRVGNITQRRLARDKTGAHARSMYSSSSL 428
            TSTTEAS+EK DSNGTSA+KP DLGG ETGSTAGDGHGSSLAVPAP +MA LLPCLSSNTRL++ EE DASPER+SRDRAMSSAAS RKSPPG  M  PTTDLVFVLSVAVQDSP CQRLVLKAGGVAAMS  LQHLVSRVKQEAGSRW+G AEDCSDRYARLAETCLRVMEYLG VERGRRRL RGGSVEIAISTIRCFRCHSGVL AA GLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKG EMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPG+KHIPGWTVSEEERL TEKALETAEVAASNWTPYNLATFMGTMRSQHQL+IGNLAYYHFFRVVSEAGLLPHP+EDVHDWRQRLRR           YEDERHIRVGNITQRRLARDKTGAHARS+YSSSSL
Sbjct:  307 TSTTEASAEKVDSNGTSAMKPLDLGGPETGSTAGDGHGSSLAVPAPPSMANLLPCLSSNTRLEEREE-DASPERKSRDRAMSSAASARKSPPGSHMNVPTTDLVFVLSVAVQDSPVCQRLVLKAGGVAAMSATLQHLVSRVKQEAGSRWDGGAEDCSDRYARLAETCLRVMEYLGCVERGRRRLVRGGSVEIAISTIRCFRCHSGVLTAATGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGKKHIPGWTVSEEERLNTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHPNEDVHDWRQRLRR-----------YEDERHIRVGNITQRRLARDKTGAHARSLYSSSSL 722

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BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Match: A0A6H5JF41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE)

HSP 1 Score: 597 bits (1539), Expect = 1.110e-206
Identity = 337/459 (73.42%), Postives = 352/459 (76.69%), Query Frame = 0

Query:    1 TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWNGSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCFR-CHSGV-LIAAVGLLLLLS-------VSPEGRGRIL----------------------KARGFRVVFEAMQRLVGNDLVQVKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGNLAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHIRVGNITQRRLARDKTGAHARSMYSSSSL 428
            TST EAS+EKFDSNGTSAVKPP LGG ETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLD EEE DASPERQ RDR MSSAASTRKSP G  +K PTTDLVFVLSVA+QD+PECQRLVLKAGGVAAMST LQHL+SRVKQ AGSRW+ S EDCSD YARLAE CLRVME+LGRVERGRRRLERGG VEIAISTIRCFR CH G      VG L   +           G G I                       +ARGFRVVFEAMQRLVGNDLVQVKG EMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQL++GN+                                  +L      YEDERHIRVGNITQRRLARDKTGAHARS+YSSS+L
Sbjct:  319 TSTMEASAEKFDSNGTSAVKPPGLGGPETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDGEEEEDASPERQRRDRVMSSAASTRKSPSGSPLKLPTTDLVFVLSVAMQDTPECQRLVLKAGGVAAMSTTLQHLISRVKQGAGSRWDRSEEDCSDSYARLAEMCLRVMEHLGRVERGRRRLERGGYVEIAISTIRCFRGCHRGRDRFRIVGKLWPCAEHTRQPRARSSGGGSIFFCTCDILSTRRRLLYLHRCCPSQARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQVGNM----------------------------------LLADRCHGYEDERHIRVGNITQRRLARDKTGAHARSLYSSSTL 743

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8484.19879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FKN6_ECTSI	3.820e-259	89.72	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JF41_9PHAE	1.110e-206	73.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 99..296 e-value: 1.2E-7 score: 32.7
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 204..221
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..203
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 222..428
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 105..274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8484	contig	Ecto-sp13_S_contig8484:3464..6850 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8484.19879.1	mRNA_Ecto-sp13_S_contig8484.19879.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8484 3464..6850 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8484.19879.1 ID=prot_Ecto-sp13_S_contig8484.19879.1|Name=mRNA_Ecto-sp13_S_contig8484.19879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=429bp
TSTTEASSEKFDSNGTSAVKPPDLGGSETGSTAGDGHGSSLAVPAPSTMA
KLLPCLSSNTRLDDEEEGDASPERQSRDRAMSSAASTRKSPPGPQMKAPT
TDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTALQHLVSRVKQEAGSRWN
GSAEDCSDRYARLAETCLRVMEYLGRVERGRRRLERGGSVEIAISTIRCF
RCHSGVLIAAVGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQ
VKGTEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKH
IPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLEIGN
LAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQDTILPQSFRRYEDERHI
RVGNITQRRLARDKTGAHARSMYSSSSL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold