mRNA_Ecto-sp13_S_contig84835.19878.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84835.19878.1
Unique NamemRNA_Ecto-sp13_S_contig84835.19878.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84835.19878.1 vs. uniprot
Match: UPI0000161E52 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52)

HSP 1 Score: 266 bits (681), Expect = 1.540e-83
Identity = 130/149 (87.25%), Postives = 136/149 (91.28%), Query Frame = 1 
Query:    1 LANAMGTGVQMWHRDGRAKEVLAKTDPSHRGKRTRPEPHPFSAVIAFQENTVLHVVKGSHNRGEENDFSQDAPHEHHITKGYTAVFYSILVHRGMGTEGDCPSENIRGHMYLTVAGCTLPPFGEIEANIKGPEAVATATASTPTLAAAT 447
            LANAMGTGVQMWHRDGRAKEVLAKT PSH+ KRTRPEPHPFSAVIAFQENTVLHVV+GSHNRGEENDFSQDAPH HHI  GY AVFYSILVHRGMGT+GD PSEN+RGHMYLTVAGCTLP FG+IEA+I GPEA ATATAST T AA T
Sbjct:   76 LANAMGTGVQMWHRDGRAKEVLAKTHPSHKDKRTRPEPHPFSAVIAFQENTVLHVVRGSHNRGEENDFSQDAPHAHHIPIGYAAVFYSILVHRGMGTDGDRPSENVRGHMYLTVAGCTLPSFGKIEASINGPEADATATASTHTPAATT 224
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BLAST of mRNA_Ecto-sp13_S_contig84835.19878.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.080e-45
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 LANAMGTGVQMWHRDGRAKEVLAKTDPSHRGKRTRPEPHPFSAVIAFQENTVLHVVKGSHNRGEENDFSQDAPHEHHITKGYTAVFYSILVHRGMGTEGDCPSENIRGHMYLTVAGCTLPPFGEI 375
            LANAMGTGVQMWHRDGRAKEVLAKT+PSH+  R RPEPHPFSAVIAF+ENTVLHVV+GSHNRG+ENDFSQDAPH HHIT GY A+   +        EGD P+++  G M    AG  +   G I
Sbjct:  232 LANAMGTGVQMWHRDGRAKEVLAKTNPSHKDNRKRPEPHPFSAVIAFEENTVLHVVRGSHNRGKENDFSQDAPHAHHITIGYAAIPLVL--------EGDAPAQSPMGEMMQYAAGKGVARIGYI 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84835.19878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0000161E521.540e-8387.25hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LP46_ECTSI4.080e-4566.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84835contigEcto-sp13_S_contig84835:6..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464118.436916-CDS-Ecto-sp13_S_contig84835:5..5721681464118.436916-CDS-Ecto-sp13_S_contig84835:5..572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84835 6..572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464118.456361-UTR-Ecto-sp13_S_contig84835:572..5841681464118.456361-UTR-Ecto-sp13_S_contig84835:572..584Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig84835 573..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84835.19878.1prot_Ecto-sp13_S_contig84835.19878.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84835 6..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84835.19878.1

>prot_Ecto-sp13_S_contig84835.19878.1 ID=prot_Ecto-sp13_S_contig84835.19878.1|Name=mRNA_Ecto-sp13_S_contig84835.19878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MGTGVQMWHRDGRAKEVLAKTDPSHRGKRTRPEPHPFSAVIAFQENTVLH
VVKGSHNRGEENDFSQDAPHEHHITKGYTAVFYSILVHRGMGTEGDCPSE
NIRGHMYLTVAGCTLPPFGEIEANIKGPEAVATATASTPTLAAATAATAA
TAADAAQAADLAPAAVAATTAAAAAHEYTDARTGITLEK
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mRNA from alignment at Ecto-sp13_S_contig84835:6..584-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84835.19878.1 ID=mRNA_Ecto-sp13_S_contig84835.19878.1|Name=mRNA_Ecto-sp13_S_contig84835.19878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84835:6..584- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGCCAACGCGATGGGGACGGGGGTGCAAATGTGGCACCGGGATGGGCG
AGCCAAGGAGGTTTTGGCCAAGACGGACCCGTCTCACAGGGGCAAGAGGA
CGAGGCCGGAACCACACCCCTTCTCGGCCGTGATTGCTTTCCAGGAGAAC
ACCGTGCTTCACGTGGTCAAGGGTTCGCACAACAGAGGGGAGGAAAACGA
CTTCAGCCAAGATGCACCCCACGAACACCACATCACCAAAGGATATACAG
CGGTGTTTTACTCCATTCTCGTGCACCGTGGAATGGGTACCGAGGGCGAT
TGCCCGAGCGAGAACATCCGCGGGCACATGTACCTCACGGTAGCGGGCTG
TACGTTGCCGCCGTTTGGAGAGATTGAAGCCAACATCAAGGGGCCCGAGG
CCGTTGCTACCGCTACTGCTTCTACACCCACTCTTGCTGCCGCCACTGCT
GCCACTGCTGCTACCGCTGCGGATGCGGCCCAAGCTGCTGACCTGGCTCC
CGCGGCTGTCGCCGCTACAACTGCTGCGGCTGCTGCACACGAGTACACCG
ACGCCCGGACAGGGATAACCCTCGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84835:6..584-

>mRNA_Ecto-sp13_S_contig84835.19878.1 ID=mRNA_Ecto-sp13_S_contig84835.19878.1|Name=mRNA_Ecto-sp13_S_contig84835.19878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84835:6..584- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACGGGGGTGCAAATGTGGCACCGGGATGGGCGAGCCAAGGAGGT
TTTGGCCAAGACGGACCCGTCTCACAGGGGCAAGAGGACGAGGCCGGAAC
CACACCCCTTCTCGGCCGTGATTGCTTTCCAGGAGAACACCGTGCTTCAC
GTGGTCAAGGGTTCGCACAACAGAGGGGAGGAAAACGACTTCAGCCAAGA
TGCACCCCACGAACACCACATCACCAAAGGATATACAGCGGTGTTTTACT
CCATTCTCGTGCACCGTGGAATGGGTACCGAGGGCGATTGCCCGAGCGAG
AACATCCGCGGGCACATGTACCTCACGGTAGCGGGCTGTACGTTGCCGCC
GTTTGGAGAGATTGAAGCCAACATCAAGGGGCCCGAGGCCGTTGCTACCG
CTACTGCTTCTACACCCACTCTTGCTGCCGCCACTGCTGCCACTGCTGCT
ACCGCTGCGGATGCGGCCCAAGCTGCTGACCTGGCTCCCGCGGCTGTCGC
CGCTACAACTGCTGCGGCTGCTGCACACGAGTACACCGACGCCCGGACAG
GGATAACCCTCGAGAAG
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