mRNA_Ecto-sp13_S_contig84828.19876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84828.19876.1
Unique NamemRNA_Ecto-sp13_S_contig84828.19876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84828.19876.1 vs. uniprot
Match: UPI0004BC1D8A (hypothetical protein n=1 Tax=Bradyrhizobium TaxID=374 RepID=UPI0004BC1D8A)

HSP 1 Score: 55.1 bits (131), Expect = 1.130e-7
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   61 DKSYEPPTYAEKLFKLIPTEVVALYLVGQTAINQHFPADSPAKDFFTAPWAWSSWTLICL 240
            D++   PTY E L KLIP EVV LYL G+ AI  ++ A   A D  +AP  W  WT++C+
Sbjct:    3 DEARTDPTYQEALTKLIPIEVVTLYLGGKNAIEGYYAAPGNAADG-SAPLWWWGWTIVCI 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84828.19876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0004BC1D8A1.130e-746.67hypothetical protein n=1 Tax=Bradyrhizobium TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84828contigEcto-sp13_S_contig84828:6..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464118.280874-CDS-Ecto-sp13_S_contig84828:5..2451681464118.280874-CDS-Ecto-sp13_S_contig84828:5..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84828 6..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84828.19876.1prot_Ecto-sp13_S_contig84828.19876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84828 6..245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84828.19876.1

>prot_Ecto-sp13_S_contig84828.19876.1 ID=prot_Ecto-sp13_S_contig84828.19876.1|Name=mRNA_Ecto-sp13_S_contig84828.19876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MTSAFRIQRVKPSAGALAEEDKSYEPPTYAEKLFKLIPTEVVALYLVGQT
AINQHFPADSPAKDFFTAPWAWSSWTLICL
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mRNA from alignment at Ecto-sp13_S_contig84828:6..245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84828.19876.1 ID=mRNA_Ecto-sp13_S_contig84828.19876.1|Name=mRNA_Ecto-sp13_S_contig84828.19876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84828:6..245- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAAGCGCATTCAGAATCCAGAGAGTAAAGCCTTCGGCAGGCGCTCT
TGCCGAAGAAGACAAGAGTTATGAGCCACCGACCTATGCTGAAAAACTCT
TCAAGCTTATTCCGACCGAAGTGGTTGCTTTGTATCTGGTCGGGCAGACC
GCGATAAACCAGCATTTCCCGGCTGATTCTCCTGCCAAAGATTTCTTTAC
CGCCCCGTGGGCGTGGTCCTCCTGGACACTGATATGTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84828:6..245-

>mRNA_Ecto-sp13_S_contig84828.19876.1 ID=mRNA_Ecto-sp13_S_contig84828.19876.1|Name=mRNA_Ecto-sp13_S_contig84828.19876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84828:6..245- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAAGCGCATTCAGAATCCAGAGAGTAAAGCCTTCGGCAGGCGCTCT
TGCCGAAGAAGACAAGAGTTATGAGCCACCGACCTATGCTGAAAAACTCT
TCAAGCTTATTCCGACCGAAGTGGTTGCTTTGTATCTGGTCGGGCAGACC
GCGATAAACCAGCATTTCCCGGCTGATTCTCCTGCCAAAGATTTCTTTAC
CGCCCCGTGGGCGTGGTCCTCCTGGACACTGATATGTTTG
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