mRNA_Ecto-sp13_S_contig84776.19865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84776.19865.1
Unique NamemRNA_Ecto-sp13_S_contig84776.19865.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84776.19865.1 vs. uniprot
Match: D8LCD4_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD4_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.200e-29
Identity = 57/79 (72.15%), Postives = 59/79 (74.68%), Query Frame = 3 
Query:    3 RCNLRG*CERGFGWKHELQRQFGGGPRPHFRVDRIRWLFRVVGRGVLEQHGNVRWGGVQVQLSGLYQLHRRNVSSELGQ 239
            RCNLR  CERG GWKHELQRQ  GG R    +DRIRW  RV  RGVLEQ+ NVRWGGV VQL G Y LHRRNVS ELGQ
Sbjct:  184 RCNLRDFCERGLGWKHELQRQLRGGIRRRPSLDRIRWRSRVCRRGVLEQYRNVRWGGVHVQLWGPYHLHRRNVSFELGQ 262
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BLAST of mRNA_Ecto-sp13_S_contig84776.19865.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-7
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   31 VDLDGSTSFSGNLAADHGRTFALIGSDGYS-------ELLGVVFSNNTATFGGAVYRYNYLDYTSFTDATFQANSAKSSGGAVAVTEAYS------IRCSSCSFLDNVASDDGGAVETL 348
            V  +G+ +F  N A  +G      G D  S       E  G  F NN A FGGA+Y     +  +F    F+ NSA   GGAVAV ++ S      +    C+FLDNVAS +GGAVETL
Sbjct:  298 VSWNGTATFENNEAGVNGGGLHANGCDSTSDSGGEVGEAAGATFINNRANFGGALYLSTCENAFNFAQFVFENNSALD-GGAVAVYQSGSETFGLPVVFFECTFLDNVASGNGGAVETL 415
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84776.19865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCD4_ECTSI2.200e-2972.15Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KX12_9PHAE1.390e-739.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84776contigEcto-sp13_S_contig84776:199..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.341538-CDS-Ecto-sp13_S_contig84776:198..5461681464117.341538-CDS-Ecto-sp13_S_contig84776:198..546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84776 199..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84776.19865.1prot_Ecto-sp13_S_contig84776.19865.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84776 199..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84776.19865.1

>prot_Ecto-sp13_S_contig84776.19865.1 ID=prot_Ecto-sp13_S_contig84776.19865.1|Name=mRNA_Ecto-sp13_S_contig84776.19865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
GGAIYGASVSVDLDGSTSFSGNLAADHGRTFALIGSDGYSELLGVVFSNN
TATFGGAVYRYNYLDYTSFTDATFQANSAKSSGGAVAVTEAYSIRCSSCS
FLDNVASDDGGAVETL
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mRNA from alignment at Ecto-sp13_S_contig84776:199..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84776.19865.1 ID=mRNA_Ecto-sp13_S_contig84776.19865.1|Name=mRNA_Ecto-sp13_S_contig84776.19865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84776:199..546- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGTGCAATCTACGGGGCTAGTGTGAGCGTGGATTTGGATGGAAGCAC
GAGCTTCAGCGGCAATTTGGCGGCGGACCACGGCCGCACTTTCGCGTTGA
TCGGATCCGATGGCTATTCCGAGTTGTTGGGCGTGGTGTTCTCGAACAAC
ACGGCAACGTTCGGTGGGGCGGTGTACAGGTACAATTATCTGGACTATAC
CAGCTTCACAGACGCAACGTTTCAAGCGAACTCGGCCAAAAGCTCTGGTG
GAGCAGTCGCAGTGACTGAGGCCTATTCTATTAGGTGTTCGAGTTGTTCC
TTCTTGGACAACGTGGCAAGCGATGACGGAGGGGCTGTTGAAACGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84776:199..546-

>mRNA_Ecto-sp13_S_contig84776.19865.1 ID=mRNA_Ecto-sp13_S_contig84776.19865.1|Name=mRNA_Ecto-sp13_S_contig84776.19865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84776:199..546- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGTGCAATCTACGGGGCTAGTGTGAGCGTGGATTTGGATGGAAGCAC
GAGCTTCAGCGGCAATTTGGCGGCGGACCACGGCCGCACTTTCGCGTTGA
TCGGATCCGATGGCTATTCCGAGTTGTTGGGCGTGGTGTTCTCGAACAAC
ACGGCAACGTTCGGTGGGGCGGTGTACAGGTACAATTATCTGGACTATAC
CAGCTTCACAGACGCAACGTTTCAAGCGAACTCGGCCAAAAGCTCTGGTG
GAGCAGTCGCAGTGACTGAGGCCTATTCTATTAGGTGTTCGAGTTGTTCC
TTCTTGGACAACGTGGCAAGCGATGACGGAGGGGCTGTTGAAACGTTG
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