prot_Ecto-sp13_S_contig84776.19865.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig84776.19865.1
Unique Nameprot_Ecto-sp13_S_contig84776.19865.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length116
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84776.19865.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-7
Identity = 47/119 (39.50%), Postives = 60/119 (50.42%), Query Frame = 0 
Query:   11 VDLDGSTSFSGNLAADHGRTFALIGSDGYS-------ELLGVVFSNNTATFGGAVYRYNYLDYTSFTDATFQANSAKSSGGAVAVTEAYS------IRCSSCSFLDNVASDDGGAVETL 116
            V  +G+ +F  N A  +G      G D  S       E  G  F NN A FGGA+Y     +  +F    F+ NSA   GGAVAV ++ S      +    C+FLDNVAS +GGAVETL
Sbjct:  298 VSWNGTATFENNEAGVNGGGLHANGCDSTSDSGGEVGEAAGATFINNRANFGGALYLSTCENAFNFAQFVFENNSALD-GGAVAVYQSGSETFGLPVVFFECTFLDNVASGNGGAVETL 415
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84776.19865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX12_9PHAE1.390e-739.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 45..59
e-value: 0.06
score: 13.8
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 45..59
e-value: 0.0014
score: 16.4
coord: 70..91
e-value: 6.0E-5
score: 20.7
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 10..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84776contigEcto-sp13_S_contig84776:199..546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84776.19865.1mRNA_Ecto-sp13_S_contig84776.19865.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig84776 199..546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig84776.19865.1 ID=prot_Ecto-sp13_S_contig84776.19865.1|Name=mRNA_Ecto-sp13_S_contig84776.19865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
GGAIYGASVSVDLDGSTSFSGNLAADHGRTFALIGSDGYSELLGVVFSNN
TATFGGAVYRYNYLDYTSFTDATFQANSAKSSGGAVAVTEAYSIRCSSCS
FLDNVASDDGGAVETL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence