mRNA_Ecto-sp13_S_contig84768.19863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84768.19863.1
Unique NamemRNA_Ecto-sp13_S_contig84768.19863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A6H5JAH4_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.950e-16
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQQ 171
            FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV    SS R +     +    QQ
Sbjct:   52 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVSHRDSSGRLLVATTRATAPPQQ 108
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.980e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTV 135
            FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV    SS R +
Sbjct:  295 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVSHRDSSGRLL 339
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.810e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 105
            FQGRTNKLVDGCYSFWQGG +A+L+YV  GR  EV
Sbjct:  278 FQGRTNKLVDGCYSFWQGGTLALLEYVRRGRIGEV 312
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: UPI00192992F9 (LOW QUALITY PROTEIN: protein farnesyltransferase subunit beta-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192992F9)

HSP 1 Score: 60.8 bits (146), Expect = 2.750e-9
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYV--TAGRESEVDGACSSCRTVQTCLSSRGQ 162
            FQGRTNKLVDGCYSFWQGGA+A++  +   AG+ES + G  +S  ++     SRG+
Sbjct:  274 FQGRTNKLVDGCYSFWQGGALALIQKLLSAAGKESPLCGGQASEESMYNITLSRGE 329
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: UPI00200EEF44 (LOW QUALITY PROTEIN: protein farnesyltransferase subunit beta n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200EEF44)

HSP 1 Score: 59.7 bits (143), Expect = 6.990e-9
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQQCI 177
            FQGRTNKLVDGCYSFWQG A  I+  + A  + E+         ++TCL ++G  Q+ I
Sbjct:  275 FQGRTNKLVDGCYSFWQGAAFPIISAILAQEDKEL---------IETCLFNQGALQEYI 324
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: I4YAS6_WALMC (Protein farnesyltransferase subunit beta n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4YAS6_WALMC)

HSP 1 Score: 57.4 bits (137), Expect = 4.590e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 168
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:  238 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 293
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A4T0R3E4_9BASI (DUF605-domain-containing protein n=1 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4T0R3E4_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 4.620e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 168
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:   36 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 91
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A4T0TVE3_9BASI (Protein farnesyltransferase subunit beta n=4 Tax=Opisthokonta TaxID=33154 RepID=A0A4T0TVE3_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 168
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:  183 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 238
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A0L0HTU9_SPIPD (Protein farnesyltransferase subunit beta n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HTU9_SPIPD)

HSP 1 Score: 55.5 bits (132), Expect = 2.200e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDG 111
            FQGRTNKLVDGCYSFWQGGA  +L+   A R+ +  G
Sbjct:  285 FQGRTNKLVDGCYSFWQGGAFPLLECALARRDGDEAG 321
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BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A2P6S5D3_ROSCH (Protein farnesyltransferase subunit beta n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S5D3_ROSCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.200e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 105
            FQGRTNKLVDGCYSFWQGGA A+L  + +  E ++
Sbjct:  255 FQGRTNKLVDGCYSFWQGGAFALLQRIPSVSEEQI 289
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH4_9PHAE8.950e-1670.18Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI2.980e-1584.44Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A836CMB6_9STRA5.810e-1077.14Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
UPI00192992F92.750e-953.57LOW QUALITY PROTEIN: protein farnesyltransferase s... [more]
UPI00200EEF446.990e-947.46LOW QUALITY PROTEIN: protein farnesyltransferase s... [more]
I4YAS6_WALMC4.590e-850.00Protein farnesyltransferase subunit beta n=1 Tax=W... [more]
A0A4T0R3E4_9BASI4.620e-850.00DUF605-domain-containing protein n=1 Tax=Wallemia ... [more]
A0A4T0TVE3_9BASI4.650e-850.00Protein farnesyltransferase subunit beta n=4 Tax=O... [more]
A0A0L0HTU9_SPIPD2.200e-764.86Protein farnesyltransferase subunit beta n=3 Tax=S... [more]
A0A2P6S5D3_ROSCH2.200e-765.71Protein farnesyltransferase subunit beta n=2 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84768contigEcto-sp13_S_contig84768:67..255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score78.2
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FXI8
Preferred nameFNTB
Model size189
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
Exons1
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0365@2759
EC2.5.1.58
Cds size189
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.2776003-CDS-Ecto-sp13_S_contig84768:66..2551681464117.2776003-CDS-Ecto-sp13_S_contig84768:66..255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84768 67..255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84768.19863.1prot_Ecto-sp13_S_contig84768.19863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84768 67..255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84768.19863.1

>prot_Ecto-sp13_S_contig84768.19863.1 ID=prot_Ecto-sp13_S_contig84768.19863.1|Name=mRNA_Ecto-sp13_S_contig84768.19863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLS
SRGQFQQCIPKS*
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mRNA from alignment at Ecto-sp13_S_contig84768:67..255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84768.19863.1 ID=mRNA_Ecto-sp13_S_contig84768.19863.1|Name=mRNA_Ecto-sp13_S_contig84768.19863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84768:67..255- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGGGCGAACCAACAAGCTAGTGGACGGCTGCTACTCCTTCTGGCA
GGGCGGGGCCGTGGCCATCCTCGACTACGTTACCGCAGGCCGCGAAAGCG
AGGTAGATGGTGCTTGCTCATCATGTCGCACCGTCCAAACTTGCCTTTCT
TCACGTGGACAGTTTCAGCAATGTATCCCAAAGAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84768:67..255-

>mRNA_Ecto-sp13_S_contig84768.19863.1 ID=mRNA_Ecto-sp13_S_contig84768.19863.1|Name=mRNA_Ecto-sp13_S_contig84768.19863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84768:67..255- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGGGCGAACCAACAAGCTAGTGGACGGCTGCTACTCCTTCTGGCA
GGGCGGGGCCGTGGCCATCCTCGACTACGTTACCGCAGGCCGCGAAAGCG
AGGTAGATGGTGCTTGCTCATCATGTCGCACCGTCCAAACTTGCCTTTCT
TCACGTGGACAGTTTCAGCAATGTATCCCAAAGAGTTAA
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