prot_Ecto-sp13_S_contig84768.19863.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig84768.19863.1
Unique Nameprot_Ecto-sp13_S_contig84768.19863.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length63
Homology
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A6H5JAH4_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.950e-16
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQQ 57
            FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV    SS R +     +    QQ
Sbjct:   52 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVSHRDSSGRLLVATTRATAPPQQ 108          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.980e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTV 45
            FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV    SS R +
Sbjct:  295 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVSHRDSSGRLL 339          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.810e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 35
            FQGRTNKLVDGCYSFWQGG +A+L+YV  GR  EV
Sbjct:  278 FQGRTNKLVDGCYSFWQGGTLALLEYVRRGRIGEV 312          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: UPI00192992F9 (LOW QUALITY PROTEIN: protein farnesyltransferase subunit beta-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192992F9)

HSP 1 Score: 60.8 bits (146), Expect = 2.750e-9
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYV--TAGRESEVDGACSSCRTVQTCLSSRGQ 54
            FQGRTNKLVDGCYSFWQGGA+A++  +   AG+ES + G  +S  ++     SRG+
Sbjct:  274 FQGRTNKLVDGCYSFWQGGALALIQKLLSAAGKESPLCGGQASEESMYNITLSRGE 329          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: UPI00200EEF44 (LOW QUALITY PROTEIN: protein farnesyltransferase subunit beta n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200EEF44)

HSP 1 Score: 59.7 bits (143), Expect = 6.990e-9
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQQCI 59
            FQGRTNKLVDGCYSFWQG A  I+  + A  + E+         ++TCL ++G  Q+ I
Sbjct:  275 FQGRTNKLVDGCYSFWQGAAFPIISAILAQEDKEL---------IETCLFNQGALQEYI 324          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: I4YAS6_WALMC (Protein farnesyltransferase subunit beta n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4YAS6_WALMC)

HSP 1 Score: 57.4 bits (137), Expect = 4.590e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 56
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:  238 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 293          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A4T0R3E4_9BASI (DUF605-domain-containing protein n=1 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4T0R3E4_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 4.620e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 56
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:   36 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 91          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A4T0TVE3_9BASI (Protein farnesyltransferase subunit beta n=4 Tax=Opisthokonta TaxID=33154 RepID=A0A4T0TVE3_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-8
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLSSRGQFQ 56
            F+GRTNKLVDGCYS+W GG+  +L+Y   G +S VD    S    +TCL  R   Q
Sbjct:  183 FRGRTNKLVDGCYSWWLGGSFNLLEYWQQGVDSTVDDDDDSWIDEETCLYDREALQ 238          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A0L0HTU9_SPIPD (Protein farnesyltransferase subunit beta n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HTU9_SPIPD)

HSP 1 Score: 55.5 bits (132), Expect = 2.200e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDG 37
            FQGRTNKLVDGCYSFWQGGA  +L+   A R+ +  G
Sbjct:  285 FQGRTNKLVDGCYSFWQGGAFPLLECALARRDGDEAG 321          
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Match: A0A2P6S5D3_ROSCH (Protein farnesyltransferase subunit beta n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S5D3_ROSCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.200e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0
Query:    1 FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 35
            FQGRTNKLVDGCYSFWQGGA A+L  + +  E ++
Sbjct:  255 FQGRTNKLVDGCYSFWQGGAFALLQRIPSVSEEQI 289          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84768.19863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH4_9PHAE8.950e-1670.18Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI2.980e-1584.44Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A836CMB6_9STRA5.810e-1077.14Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
UPI00192992F92.750e-953.57LOW QUALITY PROTEIN: protein farnesyltransferase s... [more]
UPI00200EEF446.990e-947.46LOW QUALITY PROTEIN: protein farnesyltransferase s... [more]
I4YAS6_WALMC4.590e-850.00Protein farnesyltransferase subunit beta n=1 Tax=W... [more]
A0A4T0R3E4_9BASI4.620e-850.00DUF605-domain-containing protein n=1 Tax=Wallemia ... [more]
A0A4T0TVE3_9BASI4.650e-850.00Protein farnesyltransferase subunit beta n=4 Tax=O... [more]
A0A0L0HTU9_SPIPD2.200e-764.86Protein farnesyltransferase subunit beta n=3 Tax=S... [more]
A0A2P6S5D3_ROSCH2.200e-765.71Protein farnesyltransferase subunit beta n=2 Tax=R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.50.10.20coord: 1..59
e-value: 1.7E-13
score: 52.1
NoneNo IPR availablePANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 1..32
IPR026872Protein farnesyltransferase subunit betaPANTHERPTHR11774:SF6CHURC1-FNTB READTHROUGH-RELATEDcoord: 1..32
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 1..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84768contigEcto-sp13_S_contig84768:67..255 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84768.19863.1mRNA_Ecto-sp13_S_contig84768.19863.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig84768 67..255 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig84768.19863.1 ID=prot_Ecto-sp13_S_contig84768.19863.1|Name=mRNA_Ecto-sp13_S_contig84768.19863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
FQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVDGACSSCRTVQTCLS
SRGQFQQCIPKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026872FTB
IPR008930Terpenoid_cyclase/PrenylTrfase