mRNA_Ecto-sp13_S_contig8471.19857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8471.19857.1
Unique NamemRNA_Ecto-sp13_S_contig8471.19857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8471.19857.1 vs. uniprot
Match: A0A6H5JTA2_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTA2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 6.340e-61
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    1 GFPTLLFFSHGNLHKFAGPRKIDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIIVLVGSLLLLLVLFTITLSKPPPQAPSKRAKAD 327
            GFPTLLFFSHGNLHKFAGPRK+DSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTI+VLVGSLLLLLVLF ITLSKPPPQAPSKRAKAD
Sbjct:  157 GFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLLLLLVLFAITLSKPPPQAPSKRAKAD 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8471.19857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTA2_9PHAE6.340e-6197.25Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8471contigEcto-sp13_S_contig8471:4454..6849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score160.2
Seed ortholog evalue5.4e-37
Seed eggNOG ortholog2880.D8LB12
Model size1244
KEGG koko:K13984
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Cds size330
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464116.92058-UTR-Ecto-sp13_S_contig8471:4453..53391681464116.92058-UTR-Ecto-sp13_S_contig8471:4453..5339Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8471 4454..5339 -
1681464116.9353018-UTR-Ecto-sp13_S_contig8471:5353..53791681464116.9353018-UTR-Ecto-sp13_S_contig8471:5353..5379Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8471 5354..5379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464116.94737-CDS-Ecto-sp13_S_contig8471:5379..55531681464116.94737-CDS-Ecto-sp13_S_contig8471:5379..5553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8471 5380..5553 -
1681464116.9672198-CDS-Ecto-sp13_S_contig8471:6267..63331681464116.9672198-CDS-Ecto-sp13_S_contig8471:6267..6333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8471 6268..6333 -
1681464116.985631-CDS-Ecto-sp13_S_contig8471:6759..68491681464116.985631-CDS-Ecto-sp13_S_contig8471:6759..6849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8471 6760..6849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8471.19857.1prot_Ecto-sp13_S_contig8471.19857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8471 5380..6849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8471.19857.1

>prot_Ecto-sp13_S_contig8471.19857.1 ID=prot_Ecto-sp13_S_contig8471.19857.1|Name=mRNA_Ecto-sp13_S_contig8471.19857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
GFPTLLFFSHGNLHKFAGPRKIDSFIEFAKGGFKKTDSVPVPAPPSLAGG
LKGLLTSVLKDLEGVKDGKMPSQMTIIVLVGSLLLLLVLFTITLSKPPPQ
APSKRAKAD*
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mRNA from alignment at Ecto-sp13_S_contig8471:4454..6849-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8471.19857.1 ID=mRNA_Ecto-sp13_S_contig8471.19857.1|Name=mRNA_Ecto-sp13_S_contig8471.19857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8471:4454..6849- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTCCCGACGCTGTTGTTCTTCTCGCATGGGAACCTCCACAAGTTCGC
TGGCCCTCGCAAGATCGATTCCTTCATCGAATTTGCCAAGGTCAGAGCTC
GGACGCGAGGGCGTGGGGCCTCCATGGCTTAACTTTTGCTACAGATTGTC
ACTAATGGCCATTTTTTTATGCTGTTGCGCGTGCCTCTTGATATGGTATG
TTGCTCGGTGCGTCTCCCCCCCGCGTAGCGGTGTGCATGTCCACCACGGA
AAGAGAGCGCCTTGGAGTCGTTTACTTTTTGCCGACAAGAGCCGCTGATG
GACTCTTCCTTGTCGCGGTTGCCGGACAGTCTCATGGAAGTAAAGGCGGA
TTGCCTTTCCGCGTCCTCTTGACTACGCTGCATCAGCTCTCGGGCTTCTC
CCGAATCATGTTATTTTTCGTTGAACGCCTCCCGCCACCCGCTCCGGACC
CGCTCACGTTTACCCTTGTTGTGGTTCCGCGGGTCTCGTGCTTGCTTTTT
GGTGTTTGGAGAGCAGGGAGGATTCAAGAAGACGGACTCCGTGCCGGTGC
CCGCTCCCCCTTCCCTGGCTGGTGGCTTGAAGGTGATGGGCGGGATGTTT
GCACCTTCCCGTTAATATTATTTCAATGTATTCACTCGCACGGTTATCCG
GGGAGGGCGCACCGTTGCCAGGTTCTTGTTTGGCTGTAACGTGAAGGTGT
GAGTTTGAGTGTGATTTGTGTGATGACCCTTGAACTCTAGAGTGTTTCGC
GCGAACAGCGGATGGCACAATAATTAGGGAGCTCAGCAATTGTACAGGCA
GCTCGCGGAGAGAATATAAGTACCCTCAGTTTTCCTGTTGGTCAACACCG
GTCCCGCTGAGTTCTGATTGGTCGGAAATCCTTGACCGGGTGTGGGACGT
CAGCCATGGGCGAAAATTCACGTTTCGGCTTGGATGCGACCCTCCCTCCC
ATCTTCTGGCTTGCCTTTCGATCTCGGCTGTTGGACCTATTTTCAGGCGA
GGGGTGGAAAATCTCACGTACCTTGGTGGAATATTTCATATTTCGTCGAT
TTAGAGAAAGTAGTCTCATACTTTAATTTACCACCATCTTCGTTACGGAA
GATGTTTTCGACATACAGTGTGTGATTTTCAGCTCCCTTTGTTTGCCTGG
AATTTCATCACAAGTGGCTGTATTTTTCCGATGCGCTCTTCGGGCCGGGC
GGAAGTAAGACCTACCCTGTCCAGCCGCATGTGATGCCCATGAAGGCCCT
GATCCCACCCGCTCCAAACGCATACCGTACGTGGCACGCATAACAGGGAC
TCCTGACCAGCGTGCTCAAGGATCTCGAAGGGGTGAAGGACGGAAAAATG
CCGTCTCAAATGACTATCATCGTGCTGGTTGGGTCTCTTCTGCTTCTCCT
GGTGCTCTTCACCATAACGCTTTCCAAGCCCCCGCCTCAGGCTCCGTCGA
AAAGAGCTAAGGCAGACTAACTTCACGTCCCCGGCCCCTTCGGGGTTCGG
GGTTCGGGGTGATGATGCAATAGTCTTGGTATGTACGACGGCACTGTATT
ATGTGTGTGCCGCGATGTAGCGCAGAAATGAAAGCCCAGAGTGTGTGGCC
ATGTCGCAACGCAGAGCTATGTTGAACGCGCAGAAATGTTCGGGTAAGAT
CCAGAGTTGAAGATCCAAAATTGCACCGCAGACCTAGACGTGCACGGAGA
GCCGCTGCAATGTTGTACCTCCATTCCGCAGGAGTGAAGTTGTTTTGGCC
GTCCTGACTGGTTGCTCCTGCCGTCAGACGTAGACTTCGTGCGCGTGCTT
GCGGTGTGCATTTTATTATAGGATGGCTTTTGTTAGCAGGCGCGCGGGGG
ACGTCGCTGTTGCCAATGTTGTTTCTCAACGGGTTTGATGGGGTGTTTCT
GCTGACGGCGTTCAGTTGATTTTCGTGCCGCATTTAATTCTGTGTGTTGT
TCCCGCCAAGTGTTCTTGAGAGGAAGATGCGGGACTTACAGATCATCATG
TGAAGGTGGCGGAGAAGTTTCTTGCGGAATCGTTTTCGCTGTGGGAGACA
TGCTTTGCAGATTTTCTTACTCGAAAGGTCGCTTGTTTTGCGCTGTCTCT
ACGTTTATCCGGCGTCCGATCCAGTCAGGTGAACACGGGCACTGCCATAT
GGTTCGTACCTGGTTCGGTAGTCTCTCTATCGGAAGGGCGTTTTTGAAGC
TGCTTGTTTTGATGCGCTAGGTGTGATGTCTCGATAGTACCGCCGAGAAT
GAGATGGTGGTTGCTTAAAGCATTGGTATGCATACCCTCTCGTTTCCACT
GCGTCGCAATCTGCCCCGTCGTTCGGTTGTGAGACGGACGATTCTCTGGC
CGCGCGCGAGCTCCGCCGATAAGAGGGGGTAAAGCACGAAGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8471:4454..6849-

>mRNA_Ecto-sp13_S_contig8471.19857.1 ID=mRNA_Ecto-sp13_S_contig8471.19857.1|Name=mRNA_Ecto-sp13_S_contig8471.19857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8471:4454..6849- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTCCCGACGCTGTTGTTCTTCTCGCATGGGAACCTCCACAAGTTCGC
TGGCCCTCGCAAGATCGATTCCTTCATCGAATTTGCCAAGGGAGGATTCA
AGAAGACGGACTCCGTGCCGGTGCCCGCTCCCCCTTCCCTGGCTGGTGGC
TTGAAGGGACTCCTGACCAGCGTGCTCAAGGATCTCGAAGGGGTGAAGGA
CGGAAAAATGCCGTCTCAAATGACTATCATCGTGCTGGTTGGGTCTCTTC
TGCTTCTCCTGGTGCTCTTCACCATAACGCTTTCCAAGCCCCCGCCTCAG
GCTCCGTCGAAAAGAGCTAAGGCAGACTAA
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