prot_Ecto-sp13_S_contig8471.19857.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8471.19857.1
Unique Nameprot_Ecto-sp13_S_contig8471.19857.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length110
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8471.19857.1 vs. uniprot
Match: A0A6H5JTA2_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTA2_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.270e-65
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0 
Query:    1 GFPTLLFFSHGNLHKFAGPRKIDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIIVLVGSLLLLLVLFTITLSKPPPQAPSKRAKAD 109
            GFPTLLFFSHGNLHKFAGPRK+DSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTI+VLVGSLLLLLVLF ITLSKPPPQAPSKRAKAD
Sbjct:  157 GFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLLLLLVLFAITLSKPPPQAPSKRAKAD 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8471.19857.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTA2_9PHAE1.270e-6597.25Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..95
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8471contigEcto-sp13_S_contig8471:5380..6849 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8471.19857.1mRNA_Ecto-sp13_S_contig8471.19857.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8471 4454..6849 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8471.19857.1 ID=prot_Ecto-sp13_S_contig8471.19857.1|Name=mRNA_Ecto-sp13_S_contig8471.19857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
GFPTLLFFSHGNLHKFAGPRKIDSFIEFAKGGFKKTDSVPVPAPPSLAGG
LKGLLTSVLKDLEGVKDGKMPSQMTIIVLVGSLLLLLVLFTITLSKPPPQ
APSKRAKAD*
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