mRNA_Ecto-sp13_S_contig847.19855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig847.19855.1
Unique NamemRNA_Ecto-sp13_S_contig847.19855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig847.19855.1 vs. uniprot
Match: D8LMS6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.870e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:    3 MGTIFYALIAGRLPFAKQGVQLVRVGTARPEMAPWWHKGYTQVIQDI 143
            MG IFYALIAGRLPF KQGVQLVR+ TARPEMAPWWHKGYTQVIQD+
Sbjct:   99 MGIIFYALIAGRLPFTKQGVQLVRMSTARPEMAPWWHKGYTQVIQDM 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig847.19855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMS6_ECTSI7.870e-2189.36Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig847contigEcto-sp13_S_contig847:18995..20110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.7
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog2880.D8LMS6
Model size536
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
Cds size534
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464116.430475-CDS-Ecto-sp13_S_contig847:18994..194021681464116.430475-CDS-Ecto-sp13_S_contig847:18994..19402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig847 18995..19402 -
1681464116.4471128-CDS-Ecto-sp13_S_contig847:19982..201081681464116.4471128-CDS-Ecto-sp13_S_contig847:19982..20108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig847 19983..20108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464116.4580934-UTR-Ecto-sp13_S_contig847:20108..201101681464116.4580934-UTR-Ecto-sp13_S_contig847:20108..20110Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig847 20109..20110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig847.19855.1prot_Ecto-sp13_S_contig847.19855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig847 18995..20108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig847.19855.1

>prot_Ecto-sp13_S_contig847.19855.1 ID=prot_Ecto-sp13_S_contig847.19855.1|Name=mRNA_Ecto-sp13_S_contig847.19855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MGTIFYALIAGRLPFAKQGVQLVRVGTARPEMAPWWHKGYTQVIQDICVG
ARPGEEAVCGRSRRALGTHLGRAWCYPKLLAGKPSPRQRALRVISSAEKL
LRAAWVRVVNRNRTWRLLRIFLYQNLASIPHRHLNLNVQQYTRICICIWR
WWCLARVSLQYYATNSSLSIDESSGIN*
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mRNA from alignment at Ecto-sp13_S_contig847:18995..20110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig847.19855.1 ID=mRNA_Ecto-sp13_S_contig847.19855.1|Name=mRNA_Ecto-sp13_S_contig847.19855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig847:18995..20110- (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGGGAACGATATTCTACGCTCTTATCGCCGGGAGGCTGCCATTCGCG
AAACAGGGTGTGCAGCTGGTCCGCGTGGGCACAGCCAGGCCCGAGATGGC
ACCATGGTGGCACAAAGGCTACACGCAGGTACATGTAGGTCGGTAGCGTT
CTCCTGTGCCACTACATAGTAATGCATGTTCTCGAAGAAAGTGATCTCGG
ATATGTTCGTAAGCACGATGACCACTGAACCGCCAGTCGGCGCGTGTGTA
TTTGGTATGGTCAAAAAATGCCTTTTTTCGTGTTTTTATTTGCTGACTGG
TGGTACATGTGATGGTCCAGTGGTCATCGTGCTTCTCAACAGTGTATACT
GCAAGGCCAGTCAGACAACAAACGTTTGCAATGGGAGAAGAGAGCTCCGT
CGGGATAAGAGAGTGCTTATTGTGTATGCCACCGCCGCCGGTTGCTGCGG
CGTTTTTTTTGCTGAATGCAATACCGCGACATCCATCTGCATGAGTTCAG
GATAAGTTAGCAATGAATTCATGGCGTTAGCGGAAGCACTCCCAGCTTCT
ACTGTTTCCCGAGCAGCGCGCAGCGATTCTCCCCTGTGGATAGCAGGCTC
TTTTGCAAGCGTAAGAACAAACGAAGAGGAGCAGGAGCGCGAAGAAGAAA
CTTCGGCTAACGACTCGCCCGCCCTCCCTTCTCCGTGTCACAAATACTTG
CTCAAAAGGTCATCCAAGATATATGTGTGGGCGCACGACCCGGAGAAGAG
GCCGTCTGCGGGAGAAGTCGTCGAGCGCTTGGAACACATCTTGGAAGAGC
TTGGTGCTACCCCAAACTTCTCGCTGGGAAACCAAGCCCGCGACAAAGAG
CACTACGCGTAATTTCCAGCGCGGAAAAGCTTCTTCGAGCTGCGTGGGTA
CGCGTTGTCAACAGAAATCGTACGTGGAGGCTGCTTAGAATTTTTCTTTA
TCAGAACTTGGCCTCAATACCACATAGGCATTTGAATTTGAATGTACAGC
AGTACACACGCATATGTATATGCATATGGAGGTGGTGGTGTCTTGCTCGT
GTTTCCTTGCAATATTACGCAACGAATTCATCTCTATCCATAGATGAGTC
GTCCGGGATCAACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig847:18995..20110-

>mRNA_Ecto-sp13_S_contig847.19855.1 ID=mRNA_Ecto-sp13_S_contig847.19855.1|Name=mRNA_Ecto-sp13_S_contig847.19855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig847:18995..20110- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAACGATATTCTACGCTCTTATCGCCGGGAGGCTGCCATTCGCGAA
ACAGGGTGTGCAGCTGGTCCGCGTGGGCACAGCCAGGCCCGAGATGGCAC
CATGGTGGCACAAAGGCTACACGCAGGTCATCCAAGATATATGTGTGGGC
GCACGACCCGGAGAAGAGGCCGTCTGCGGGAGAAGTCGTCGAGCGCTTGG
AACACATCTTGGAAGAGCTTGGTGCTACCCCAAACTTCTCGCTGGGAAAC
CAAGCCCGCGACAAAGAGCACTACGCGTAATTTCCAGCGCGGAAAAGCTT
CTTCGAGCTGCGTGGGTACGCGTTGTCAACAGAAATCGTACGTGGAGGCT
GCTTAGAATTTTTCTTTATCAGAACTTGGCCTCAATACCACATAGGCATT
TGAATTTGAATGTACAGCAGTACACACGCATATGTATATGCATATGGAGG
TGGTGGTGTCTTGCTCGTGTTTCCTTGCAATATTACGCAACGAATTCATC
TCTATCCATAGATGAGTCGTCCGGGATCAACTAG
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