mRNA_Ecto-sp13_S_contig8459.19838.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8459.19838.1
Unique NamemRNA_Ecto-sp13_S_contig8459.19838.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8459.19838.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 5.460e-54
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 ANVYDEQEEDV---YRDIVENGPDLFSLHGTTLDAPFSFVSESLNLKFQLPSGYLLGKPLKTVVDPDDWGVLTTALLAVLGSNPTSGGKSGNGRDGG 282
            ANVYDEQEEDV   YRDIVENGPDLFSLHGTTLDAPFSFVS+SLNLKFQLPS YLLGKPLKTVVDPDDWGVLTTALLAVLG NPTSGGKSGN RDGG
Sbjct:    2 ANVYDEQEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGG 98
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BLAST of mRNA_Ecto-sp13_S_contig8459.19838.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.640e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   31 VYRDIVENGPDLFSLHGTTLDAPFSFVSESLNLKFQLPSGYLLGKPLKTVVDPDDWGVLTTALLAVLGSNPTSGGKS 261
            +Y+ +VE GPDLFS H    DAPFSF  E+   + QL     +GKPL ++VDP+D  +L  AL  VL +N T+ G S
Sbjct:   51 LYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVL-ANKTNIGDS 126
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BLAST of mRNA_Ecto-sp13_S_contig8459.19838.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-9
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   43 IVENGPDLFSLHGTTLDAPFSFVSESLNLKFQLPSGYLLGKPLKTVVDPDDWGVLTTALLAVL 231
            IVE+GPDLFSLH  T+DAPFS++ ++  ++ Q+P   ++G+ L ++VD  +   L  A+  VL
Sbjct:   60 IVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVL 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8459.19838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCA0_ECTSI5.460e-5492.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN98_9PHAE7.640e-1146.75PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE1.000e-942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8459contigEcto-sp13_S_contig8459:543..1666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_005530.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.238958-CDS-Ecto-sp13_S_contig8459:542..6461681464115.238958-CDS-Ecto-sp13_S_contig8459:542..646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8459 543..646 +
1681464115.2495067-CDS-Ecto-sp13_S_contig8459:1470..16661681464115.2495067-CDS-Ecto-sp13_S_contig8459:1470..1666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8459 1471..1666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8459.19838.1prot_Ecto-sp13_S_contig8459.19838.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8459 543..1666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8459.19838.1

>prot_Ecto-sp13_S_contig8459.19838.1 ID=prot_Ecto-sp13_S_contig8459.19838.1|Name=mRNA_Ecto-sp13_S_contig8459.19838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
ANVYDEQEEDVYRDIVENGPDLFSLHGTTLDAPFSFVSESLNLKFQLPSG
YLLGKPLKTVVDPDDWGVLTTALLAVLGSNPTSGGKSGNGRDGGGGGGIE
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mRNA from alignment at Ecto-sp13_S_contig8459:543..1666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8459.19838.1 ID=mRNA_Ecto-sp13_S_contig8459.19838.1|Name=mRNA_Ecto-sp13_S_contig8459.19838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1124bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:543..1666+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAATGTGTACGATGAGCAGGAGGAGGACGTGTACCGGGACATCGTGGA
GAATGGCCCGGATTTGTTCTCCTTGCATGGCACGACCTTGGATGCTCCGT
TCAGGTAGATAAGAGAATAAGCTAGCAAACACGACATGCCCGTGTTATCC
GTGCGTGTGCATGCTGCCGATCGATTGGTTGTAGATCCACTCAATCCATT
CACCGCAAGACGCTGAAGAGCGATTGATTGCATCTGCACAAGGAGGCCCT
CTTTGGCCATCGGACGAGAGAGATTGCCAACTATCTGTGCCAAGAAAAGT
GAGCACCAACACTGTCGAGAACGTTCTTATCGTCGCTCACATCGGAAAAA
ATTGTGACCCCGGCCACGAAAGGAGTGCATACCTGAAGGTCAATGTCCGA
TGGCAACACGTCGGCAAGCACCAAAACGGCCCCCCCACACCCGTGTCCCC
TCCCTTCCGTGGCGGAATGCGACCTGGTGGTCACGCTTCGTGCACTACAG
TCTATTAGAAAAGCTCTACAAGCGCTTTCATCCCCGGCAGAAAGTTGGTA
GTACCAAGAAAGTTGAAGAAACGACACAGTAGGCGTGATTCGTTCCCTAG
AAGCAGACTATCTATCTATGCATTCATGTCTGACTACTGAAACGGCTGGC
TGGGTGGATATGCTGCACTATGATCGACAGGTTCGACAGGTTCGATCAGC
AGCTCCCTGCGCAAACATGCTAGGGCCTCCAGATCTCCCCCAATAACTGT
TATCCCTACCGCCAGGCGTCTGTTCTAGGAGAAGGAATCGGCCATGATGC
CTCCCGAATGGAAAATGTGTATGCATCTCATGCTAGGAAGTCTTTTACAA
GCACTGCAAACAAAGTCCATTCCCCTGTCCTCTCCCGCACAAACTGGTGA
ATCGTAACATGCTTCGGCCCGCAACCAGCTTCGTGAGCGAGAGCTTGAAC
CTCAAGTTTCAGCTCCCCTCCGGATATCTCCTCGGAAAGCCCCTCAAAAC
CGTCGTTGACCCGGATGACTGGGGAGTGCTGACGACAGCACTGCTTGCAG
TGTTGGGCTCTAACCCAACCAGTGGTGGTAAAAGTGGCAACGGCCGTGAC
GGTGGTGGTGGTGGTGGCATTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8459:543..1666+

>mRNA_Ecto-sp13_S_contig8459.19838.1 ID=mRNA_Ecto-sp13_S_contig8459.19838.1|Name=mRNA_Ecto-sp13_S_contig8459.19838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:543..1666+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAATGTGTACGATGAGCAGGAGGAGGACGTGTACCGGGACATCGTGGA
GAATGGCCCGGATTTGTTCTCCTTGCATGGCACGACCTTGGATGCTCCGT
TCAGCTTCGTGAGCGAGAGCTTGAACCTCAAGTTTCAGCTCCCCTCCGGA
TATCTCCTCGGAAAGCCCCTCAAAACCGTCGTTGACCCGGATGACTGGGG
AGTGCTGACGACAGCACTGCTTGCAGTGTTGGGCTCTAACCCAACCAGTG
GTGGTAAAAGTGGCAACGGCCGTGACGGTGGTGGTGGTGGTGGCATTGAG
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