mRNA_Ecto-sp13_S_contig845.19830.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig845.19830.1
Unique NamemRNA_Ecto-sp13_S_contig845.19830.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig845.19830.1 vs. uniprot
Match: D7FMM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM5_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-10
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 MKLEGNYLFIGLLSSRRKLAPGSFTPIHWSAQF 99
            MKLEG+Y  IGLLSSRRK  PGSFTP+HWSA F
Sbjct:    1 MKLEGDYFLIGLLSSRRKPDPGSFTPLHWSAHF 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig845.19830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM5_ECTSI1.260e-1078.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig845contigEcto-sp13_S_contig845:18186..19304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_000890.1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.5160315-CDS-Ecto-sp13_S_contig845:18185..182501681464114.5160315-CDS-Ecto-sp13_S_contig845:18185..18250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig845 18186..18250 +
1681464114.528781-CDS-Ecto-sp13_S_contig845:19209..192881681464114.528781-CDS-Ecto-sp13_S_contig845:19209..19288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig845 19210..19288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.5479958-UTR-Ecto-sp13_S_contig845:19288..193041681464114.5479958-UTR-Ecto-sp13_S_contig845:19288..19304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig845 19289..19304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig845.19830.1prot_Ecto-sp13_S_contig845.19830.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig845 18186..19288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig845.19830.1

>prot_Ecto-sp13_S_contig845.19830.1 ID=prot_Ecto-sp13_S_contig845.19830.1|Name=mRNA_Ecto-sp13_S_contig845.19830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MKLEGNYLFIGLLSSRRKLAPGSFTPIHWSAQFRAKGSRRDTPRRWR*
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mRNA from alignment at Ecto-sp13_S_contig845:18186..19304+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig845.19830.1 ID=mRNA_Ecto-sp13_S_contig845.19830.1|Name=mRNA_Ecto-sp13_S_contig845.19830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig845:18186..19304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTCGAGGGAAATTACCTCTTCATCGGTCTCCTGTCCAGCAGGCG
AAAGCTAGCTCCTGGGTAAGTTTCTTGCTGGTCGAAGGGCCGCACGGAAT
CGATCACACCCCGTTCGTAGCCTATGGCATCCATATCATGGTTACGTTTC
TTGCCAATCGATCGAAAAGGCCGCCCAACCTCACCGTACAAGTGCGGTGC
ATAATATAGTTCGACGCAAAGTCGTTTCCAATTTTGTGTGAAGTTACCCC
CAGTCGTAGTTGGTATCTAGCATGGTGATAGAAGTGTTTCGTTCCGTGAC
ACTTCTGCACTACAAGTAGCATGCACGGCTGCTGTAGCCTGTGTCAAACT
GGTTCATGCGAAAAAAATGTGTCGGTTCGGCGAACCATACAAGTAGCATA
GTTTCGCCGCCATTCAACCCACTCCGGCCGATGTTGAGGTGCTGAGATCA
CTTTCTTTCTCTCTTTCTCTTCCATGTGTATGTGCCGCACGGCAGAAGCT
AACCCTAACTAACCCTAAACATAGCGGCGCCAGTCGCCCTGGTTGTCCAA
GATGCTGTATCTCGCCGACGGACGAAACATATCTGGAGGGCAGGTGGTAT
GTTGGACAATAATTTGTAGGTACTGTAAAACACATCGCCCCGACCCGAAA
AGTGGGACGAAGCCTAGCACATCGGAACAAAGCGGAGAGGAATCAAACAT
CACTAATCAATCAAGACAACGCTCGGCTCGCACCGTTCGGTTCTCTCTTG
CACCACTCTGCTATTGATCTAGACTCTCCTTTATTCCTCTTCAGTTCCGT
GTAAACAGCACGGCCCTGAAGTAAGTTCTTATCTCGCCGATACCGTCCAA
CGGTTTCTTCACATCTTCGCCCCCCCCCCGCCGCCCACACTCTCTCACCG
TTTCACTGCTACTATCAATAGGCGTGTTAATCATCGTTCTCCCGTCTTGT
TCGTCACTCTTTGTTGCATAACTTACAGTAGTCTCTCTGTGGTCGTGTTC
ACACACAATCGACTACAATCGCAGTTCGTTCACGCCCATTCACTGGTCGG
CTCAATTTCGGGCAAAGGGAAGCCGTCGAGATACTCCTCGGCGCTGGCGT
TGACGCCAACCTGAAGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig845:18186..19304+

>mRNA_Ecto-sp13_S_contig845.19830.1 ID=mRNA_Ecto-sp13_S_contig845.19830.1|Name=mRNA_Ecto-sp13_S_contig845.19830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig845:18186..19304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTCGAGGGAAATTACCTCTTCATCGGTCTCCTGTCCAGCAGGCG
AAAGCTAGCTCCTGGTTCGTTCACGCCCATTCACTGGTCGGCTCAATTTC
GGGCAAAGGGAAGCCGTCGAGATACTCCTCGGCGCTGGCGTTGA
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