mRNA_Ecto-sp13_S_contig84375.19819.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84375.19819.1
Unique NamemRNA_Ecto-sp13_S_contig84375.19819.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A6H5JG45_9PHAE (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG45_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.480e-29
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  +GPARPTGGCGAVAVL+GPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV
Sbjct:  193 IAVYAEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 249          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: D7FXY3_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.390e-28
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  +GPARPTGGCGAVAVL+GPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV
Sbjct:  162 IAVYAEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 218          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.520e-23
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  +GPARPTGGCGAVAVLIGPDAPL +N   R ++ACDVWDFFKPDMSSEYPRV
Sbjct:  164 IAVYAEGPARPTGGCGAVAVLIGPDAPLAVNACARTTHACDVWDFFKPDMSSEYPRV 220          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: M4BVN1_HYAAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN1_HYAAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.900e-20
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARP+GGCGAVA+L+GPDAP+V++ KT+A++A +VWDF+KP MSSEYP V
Sbjct:  151 IAVYAKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTV 207          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: M4BVN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN2_HYAAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.960e-20
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARP+GGCGAVA+L+GPDAP+V++ KT+A++A +VWDF+KP MSSEYP V
Sbjct:  151 IAVYAKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTV 207          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A3M6VN02_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN02_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.030e-19
Identity = 36/52 (69.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query:   16 KGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            KGPARP+GGCGAVA+LIGPDAP+V++ +T+A++A +VWDF+KPD+S+EYP V
Sbjct:  155 KGPARPSGGCGAVAMLIGPDAPMVLDCRTKATHAANVWDFYKPDVSTEYPTV 206          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A2P4X3F4_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3F4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-19
Identity = 36/57 (63.16%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARP+GGC AVA+LIGPDAP+V++ +T+A++A +VWDF+KP++SSEYP V
Sbjct:  151 IAVYAKGPARPSGGCAAVAMLIGPDAPMVLDCRTKATHATNVWDFYKPNVSSEYPTV 207          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A2L0CZR1_9CUCU (HMG coenzyme A synthase (Fragment) n=1 Tax=Stethorus sp. C54 TaxID=2055544 RepID=A0A2L0CZR1_9CUCU)

HSP 1 Score: 83.6 bits (205), Expect = 3.040e-19
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARPTGG GAVA+LIGPDAPLV + K R+ Y   V+DFFKPD+SSEYP V
Sbjct:   32 IAVYAKGPARPTGGAGAVAMLIGPDAPLVFDRKVRSVYMRHVYDFFKPDLSSEYPEV 88          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: D0NKN5_PHYIT (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytophthora TaxID=4783 RepID=D0NKN5_PHYIT)

HSP 1 Score: 87.4 bits (215), Expect = 9.620e-19
Identity = 36/57 (63.16%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARP+GGCGAVA+LIGPDAP+V++ +T++++A +VWDF+KP++SSEYP V
Sbjct:  151 IAVYAKGPARPSGGCGAVAMLIGPDAPMVLDCRTKSTHATNVWDFYKPNVSSEYPTV 207          
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A7S1TN15_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN15_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.770e-18
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
            + V  KGPARPTGGCGAVAVLIGPDAPL I++K RA++A +VWDF+KP    EYP V
Sbjct:  484 IAVYAKGPARPTGGCGAVAVLIGPDAPLAIDLKGRATHAANVWDFYKPRHDVEYPEV 540          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG45_9PHAE3.480e-2989.47Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]
D7FXY3_ECTSI8.390e-2889.47Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocar... [more]
A0A836C9U2_9STRA4.520e-2377.19Hydroxymethylglutaryl-coenzyme A synthase N termin... [more]
M4BVN1_HYAAE7.900e-2066.67Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyalope... [more]
M4BVN2_HYAAE7.960e-2066.67Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M6VN02_9STRA2.030e-1969.23Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2P4X3F4_9STRA2.050e-1963.16Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]
A0A2L0CZR1_9CUCU3.040e-1968.42HMG coenzyme A synthase (Fragment) n=1 Tax=Stethor... [more]
D0NKN5_PHYIT9.620e-1963.16Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytop... [more]
A0A7S1TN15_9STRA1.770e-1868.42Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84375contigEcto-sp13_S_contig84375:374..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.0
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7FXY3
Model size171
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.hydroxymethylglutaryl-CoA synthase activity
EggNOG OGsCOG3425@1,KOG1393@2759
EC2.3.3.10
Cds size171
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.604341-CDS-Ecto-sp13_S_contig84375:373..5441681464113.604341-CDS-Ecto-sp13_S_contig84375:373..544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84375 374..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84375.19819.1prot_Ecto-sp13_S_contig84375.19819.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84375 374..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84375.19819.1

>prot_Ecto-sp13_S_contig84375.19819.1 ID=prot_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDM
SSEYPRV
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mRNA from alignment at Ecto-sp13_S_contig84375:374..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84375.19819.1 ID=mRNA_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84375:374..544- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTATCGTGCCGCGAAAGGGACCGGCACGTCCTACGGGGGGGTGCGGCGC GGTGGCTGTCCTGATAGGTCCAGACGCCCCGCTGGTGATCAACATGAAGA CCCGGGCATCGTACGCTTGCGACGTTTGGGACTTCTTCAAGCCAGACATG TCTTCGGAGTACCCGCGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84375:374..544-

>mRNA_Ecto-sp13_S_contig84375.19819.1 ID=mRNA_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84375:374..544- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTATCGTGCCGCGAAAGGGACCGGCACGTCCTACGGGGGGGTGCGGCGC
GGTGGCTGTCCTGATAGGTCCAGACGCCCCGCTGGTGATCAACATGAAGA
CCCGGGCATCGTACGCTTGCGACGTTTGGGACTTCTTCAAGCCAGACATG
TCTTCGGAGTACCCGCGGGTG
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