mRNA_Ecto-sp13_S_contig84375.19819.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A6H5JG45_9PHAE (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG45_9PHAE) HSP 1 Score: 113 bits (282), Expect = 3.480e-29 Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V +GPARPTGGCGAVAVL+GPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV
Sbjct: 193 IAVYAEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 249
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: D7FXY3_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY3_ECTSI) HSP 1 Score: 113 bits (282), Expect = 8.390e-28 Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V +GPARPTGGCGAVAVL+GPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV
Sbjct: 162 IAVYAEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 218
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.520e-23 Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V +GPARPTGGCGAVAVLIGPDAPL +N R ++ACDVWDFFKPDMSSEYPRV
Sbjct: 164 IAVYAEGPARPTGGCGAVAVLIGPDAPLAVNACARTTHACDVWDFFKPDMSSEYPRV 220
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: M4BVN1_HYAAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN1_HYAAE) HSP 1 Score: 90.5 bits (223), Expect = 7.900e-20 Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARP+GGCGAVA+L+GPDAP+V++ KT+A++A +VWDF+KP MSSEYP V
Sbjct: 151 IAVYAKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTV 207
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: M4BVN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN2_HYAAE) HSP 1 Score: 90.5 bits (223), Expect = 7.960e-20 Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARP+GGCGAVA+L+GPDAP+V++ KT+A++A +VWDF+KP MSSEYP V
Sbjct: 151 IAVYAKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTV 207
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A3M6VN02_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN02_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.030e-19 Identity = 36/52 (69.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query: 16 KGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
KGPARP+GGCGAVA+LIGPDAP+V++ +T+A++A +VWDF+KPD+S+EYP V
Sbjct: 155 KGPARPSGGCGAVAMLIGPDAPMVLDCRTKATHAANVWDFYKPDVSTEYPTV 206
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A2P4X3F4_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3F4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.050e-19 Identity = 36/57 (63.16%), Postives = 50/57 (87.72%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARP+GGC AVA+LIGPDAP+V++ +T+A++A +VWDF+KP++SSEYP V
Sbjct: 151 IAVYAKGPARPSGGCAAVAMLIGPDAPMVLDCRTKATHATNVWDFYKPNVSSEYPTV 207
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A2L0CZR1_9CUCU (HMG coenzyme A synthase (Fragment) n=1 Tax=Stethorus sp. C54 TaxID=2055544 RepID=A0A2L0CZR1_9CUCU) HSP 1 Score: 83.6 bits (205), Expect = 3.040e-19 Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARPTGG GAVA+LIGPDAPLV + K R+ Y V+DFFKPD+SSEYP V
Sbjct: 32 IAVYAKGPARPTGGAGAVAMLIGPDAPLVFDRKVRSVYMRHVYDFFKPDLSSEYPEV 88
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: D0NKN5_PHYIT (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytophthora TaxID=4783 RepID=D0NKN5_PHYIT) HSP 1 Score: 87.4 bits (215), Expect = 9.620e-19 Identity = 36/57 (63.16%), Postives = 51/57 (89.47%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARP+GGCGAVA+LIGPDAP+V++ +T++++A +VWDF+KP++SSEYP V
Sbjct: 151 IAVYAKGPARPSGGCGAVAMLIGPDAPMVLDCRTKSTHATNVWDFYKPNVSSEYPTV 207
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Match: A0A7S1TN15_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN15_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.770e-18 Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRV 171
+ V KGPARPTGGCGAVAVLIGPDAPL I++K RA++A +VWDF+KP EYP V
Sbjct: 484 IAVYAKGPARPTGGCGAVAVLIGPDAPLAIDLKGRATHAANVWDFYKPRHDVEYPEV 540 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84375.19819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig84375.19819.1 >prot_Ecto-sp13_S_contig84375.19819.1 ID=prot_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMback to top mRNA from alignment at Ecto-sp13_S_contig84375:374..544- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig84375.19819.1 ID=mRNA_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84375:374..544- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84375:374..544- >mRNA_Ecto-sp13_S_contig84375.19819.1 ID=mRNA_Ecto-sp13_S_contig84375.19819.1|Name=mRNA_Ecto-sp13_S_contig84375.19819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84375:374..544- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |