mRNA_Ecto-sp13_S_contig84192.19794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A6H5JZG8_9PHAE (Hflx-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZG8_9PHAE) HSP 1 Score: 222 bits (565), Expect = 5.110e-68 Identity = 127/161 (78.88%), Postives = 130/161 (80.75%), Query Frame = 1
Query: 4 VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRH-----------RKG--------------------MVQARNRVFDTLDPTVRSLTLPSRVR 393
VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQR+LLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRH R+G MVQARNRVFDTLDPTVRS+TLPSRVR
Sbjct: 133 VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRQLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHNTRGVGGGGGNREGKGSERGRRFDGAXXXXXXXXMVQARNRVFDTLDPTVRSVTLPSRVR 293
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A1V5MDB5_9FIRM (GTPase HflX n=1 Tax=Firmicutes bacterium ADurb.Bin419 TaxID=1852892 RepID=A0A1V5MDB5_9FIRM) HSP 1 Score: 106 bits (265), Expect = 3.360e-25 Identity = 65/128 (50.78%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
+VELA LKY+ + L+ G G+ R GGGIGT G GEK ++ RR +R R + +L +VE+RRGF R SRD+ +ALVGYTN GKS+LMN L K V A +++F TLDPT RSL LPS
Sbjct: 28 QVELAQLKYRISRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRINYLEAELSEVEKRRGFMRKSRDKNFLPVIALVGYTNAGKSTLMNTLC-----KSDVFAEDKLFATLDPTARSLKLPS 148
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: W4VCL7_9FIRM (GTPase HflX n=1 Tax=Acetivibrio thermocellus JCM 21531 TaxID=1294263 RepID=W4VCL7_9FIRM) HSP 1 Score: 103 bits (258), Expect = 2.100e-24 Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLP 381
+VELA LKY+ + LV G G+ R GGGIGT G GEK ++ RR ++ R + + QLKDVE+RR R SR R ++ALVGYTN GKS+LMN+L + V A N++F TLDPT RS +LP
Sbjct: 145 QVELAQLKYRVSRLV-GLGTQLSRLGGGIGTRG-PGEKKLEVDRRHIKKRISFLESQLKDVEKRRNSLRESRTRNAIPTIALVGYTNAGKSTLMNRLC-----ESDVLAENKLFATLDPTTRSFSLP 264
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A7X8JZ49_9CLOT (GTPase HflX n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8JZ49_9CLOT) HSP 1 Score: 106 bits (264), Expect = 3.940e-24 Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
+VELA LKY+ + L+ G G+ R GGGIGT G GEK ++ RR +R R + +L +VE+RRGF+R SRD+ +ALVGYTN GKS+LMN L K V A +++F TLDPT RSL LP+
Sbjct: 284 QVELAQLKYRISRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRINHLEEELSEVEKRRGFKRKSRDKNSLPVIALVGYTNAGKSTLMNALC-----KADVFAEDKLFATLDPTARSLMLPN 404
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: UPI0001E2D92D (GTPase HflX n=1 Tax=Acetivibrio cellulolyticus TaxID=35830 RepID=UPI0001E2D92D) HSP 1 Score: 106 bits (264), Expect = 4.220e-24 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
+VELA LKY+ + L+ G G+ R GGGIGT G GEK ++ RR +R R + + +L +VE+RRGF R SRDR VALVGYTN GKS+LMN L K V A +++F TLDPT R+L LP+
Sbjct: 326 QVELAQLKYRVSRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRISYLESELSEVEKRRGFMRKSRDRDSLPVVALVGYTNAGKSTLMNTLC-----KSDVLAEDKLFATLDPTARNLKLPN 446
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A2S6R5J5_9PROT (GTPase HflX (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6R5J5_9PROT) HSP 1 Score: 103 bits (258), Expect = 6.510e-24 Identity = 64/131 (48.85%), Postives = 84/131 (64.12%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPSRVR 393
+VELA L Y+ + LV+ S + +RQ GG+G +GG GE I+ RR +R R A + R LK+V R RG R++R R VALVGYTN GKS+L N+L V +++VF TLDPT+R LTLPSR R
Sbjct: 85 QVELAALNYQRSRLVR-SWTHLERQRGGVGFLGGPGETQIEADRRQIRERIARLKRDLKNVVRTRGLHRAARQRVPYPVVALVGYTNAGKSTLFNRLT-----GADVDVKDQVFATLDPTMRGLTLPSRRR 209
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A373AC07_9FIRM (GTPase HflX n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A373AC07_9FIRM) HSP 1 Score: 103 bits (256), Expect = 2.370e-23 Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
+VELA LKY+ A LV G GS R GGGIGT G GEK ++ RRL+++R A+++R+L +V+R R RS R R+ A +A+VGYTN GKS+L+N L V +++F TLDPT R L LPS
Sbjct: 127 QVELAQLKYRQARLV-GLGSSLSRLGGGIGTRG-PGEKKLEMDRRLIKSRIAQLNRELDEVKRHREVTRSRRSRKSTAVIAIVGYTNAGKSTLLNTLT-----GAQVLEEDKLFATLDPTTRILELPS 247
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A2S6R5U1_9PROT (GTPase HflX n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R5U1_9PROT) HSP 1 Score: 103 bits (256), Expect = 2.570e-23 Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPSR 387
+VELA L Y+ + LV+ S + +RQ GG G +GG GE I+ RR LR+R A + R+L DV R R R++R R VALVGYTN GKS+L N+L V AR++VF TLDPT+R+L LPSR
Sbjct: 127 QVELAALSYQRSRLVR-SWTHLERQRGGFGFLGGPGETQIEADRRQLRDRIARLKRELNDVARTRSLHRAARQRVPYPVVALVGYTNAGKSTLFNRLTGAE-----VDARDQVFATLDPTMRTLKLPSR 249
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A6G7ZJQ7_9SPHN (GTPase HflX n=1 Tax=Sphingomonas sp. HDW15A TaxID=2714942 RepID=A0A6G7ZJQ7_9SPHN) HSP 1 Score: 102 bits (255), Expect = 3.450e-23 Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLP 381
+VELA L Y+A LV+ S + +RQ GG G +GG GE I+ RRL+RNR A++ R+L+DV R RG R R R +ALVGYTN GKS+L N++ + V A + +F TLDPT+R + LP
Sbjct: 134 QVELAHLDYQAGRLVR-SWTHLERQRGGFGFLGGPGETQIEADRRLIRNRMAKIRRELEDVRRTRGLHRERRQRAPWPVIALVGYTNAGKSTLFNRMT-----RANVMAEDLLFATLDPTMREIRLP 254
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A1Y3QA70_9FIRM (GTPase HflX n=1 Tax=Firmicutes bacterium ZCTH02-B6 TaxID=1861639 RepID=A0A1Y3QA70_9FIRM) HSP 1 Score: 101 bits (252), Expect = 4.640e-23 Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTL 378
+VELA L Y+ L G+G+ R GGGIGT G GE ++T RR +R R A + RQL+DV R R QR+ R R +ALVGYTN GKS+LMN L R G++ A NR+F TLDPTVR LTL
Sbjct: 118 QVELAQLTYQLTRLA-GAGAALSRLGGGIGTRG-PGETKLETDRRRIRRRIAMIRRQLEDVRRTRAVQRAGRRRTGLPVIALVGYTNAGKSTLMNALT----RAGVL-AENRLFATLDPTVRRLTL 236 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig84192.19794.1 >prot_Ecto-sp13_S_contig84192.19794.1 ID=prot_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp MLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHback to top mRNA from alignment at Ecto-sp13_S_contig84192:46..537- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig84192.19794.1 ID=mRNA_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84192:46..537- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84192:46..537- >mRNA_Ecto-sp13_S_contig84192.19794.1 ID=mRNA_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84192:46..537- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |