mRNA_Ecto-sp13_S_contig84192.19794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84192.19794.1
Unique NamemRNA_Ecto-sp13_S_contig84192.19794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A6H5JZG8_9PHAE (Hflx-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZG8_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 5.110e-68
Identity = 127/161 (78.88%), Postives = 130/161 (80.75%), Query Frame = 1
Query:    4 VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRH-----------RKG--------------------MVQARNRVFDTLDPTVRSLTLPSRVR 393
            VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQR+LLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRH           R+G                    MVQARNRVFDTLDPTVRS+TLPSRVR
Sbjct:  133 VELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRQLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHNTRGVGGGGGNREGKGSERGRRFDGAXXXXXXXXMVQARNRVFDTLDPTVRSVTLPSRVR 293          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A1V5MDB5_9FIRM (GTPase HflX n=1 Tax=Firmicutes bacterium ADurb.Bin419 TaxID=1852892 RepID=A0A1V5MDB5_9FIRM)

HSP 1 Score: 106 bits (265), Expect = 3.360e-25
Identity = 65/128 (50.78%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
            +VELA LKY+ + L+ G G+   R GGGIGT G  GEK ++  RR +R R   +  +L +VE+RRGF R SRD+     +ALVGYTN GKS+LMN L      K  V A +++F TLDPT RSL LPS
Sbjct:   28 QVELAQLKYRISRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRINYLEAELSEVEKRRGFMRKSRDKNFLPVIALVGYTNAGKSTLMNTLC-----KSDVFAEDKLFATLDPTARSLKLPS 148          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: W4VCL7_9FIRM (GTPase HflX n=1 Tax=Acetivibrio thermocellus JCM 21531 TaxID=1294263 RepID=W4VCL7_9FIRM)

HSP 1 Score: 103 bits (258), Expect = 2.100e-24
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLP 381
            +VELA LKY+ + LV G G+   R GGGIGT G  GEK ++  RR ++ R + +  QLKDVE+RR   R SR R    ++ALVGYTN GKS+LMN+L      +  V A N++F TLDPT RS +LP
Sbjct:  145 QVELAQLKYRVSRLV-GLGTQLSRLGGGIGTRG-PGEKKLEVDRRHIKKRISFLESQLKDVEKRRNSLRESRTRNAIPTIALVGYTNAGKSTLMNRLC-----ESDVLAENKLFATLDPTTRSFSLP 264          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A7X8JZ49_9CLOT (GTPase HflX n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8JZ49_9CLOT)

HSP 1 Score: 106 bits (264), Expect = 3.940e-24
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
            +VELA LKY+ + L+ G G+   R GGGIGT G  GEK ++  RR +R R   +  +L +VE+RRGF+R SRD+     +ALVGYTN GKS+LMN L      K  V A +++F TLDPT RSL LP+
Sbjct:  284 QVELAQLKYRISRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRINHLEEELSEVEKRRGFKRKSRDKNSLPVIALVGYTNAGKSTLMNALC-----KADVFAEDKLFATLDPTARSLMLPN 404          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: UPI0001E2D92D (GTPase HflX n=1 Tax=Acetivibrio cellulolyticus TaxID=35830 RepID=UPI0001E2D92D)

HSP 1 Score: 106 bits (264), Expect = 4.220e-24
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
            +VELA LKY+ + L+ G G+   R GGGIGT G  GEK ++  RR +R R + +  +L +VE+RRGF R SRDR     VALVGYTN GKS+LMN L      K  V A +++F TLDPT R+L LP+
Sbjct:  326 QVELAQLKYRVSRLI-GLGNQLSRLGGGIGTRG-PGEKKLEVDRRHIRRRISYLESELSEVEKRRGFMRKSRDRDSLPVVALVGYTNAGKSTLMNTLC-----KSDVLAEDKLFATLDPTARNLKLPN 446          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A2S6R5J5_9PROT (GTPase HflX (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6R5J5_9PROT)

HSP 1 Score: 103 bits (258), Expect = 6.510e-24
Identity = 64/131 (48.85%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPSRVR 393
            +VELA L Y+ + LV+ S +  +RQ GG+G +GG GE  I+  RR +R R A + R LK+V R RG  R++R R     VALVGYTN GKS+L N+L         V  +++VF TLDPT+R LTLPSR R
Sbjct:   85 QVELAALNYQRSRLVR-SWTHLERQRGGVGFLGGPGETQIEADRRQIRERIARLKRDLKNVVRTRGLHRAARQRVPYPVVALVGYTNAGKSTLFNRLT-----GADVDVKDQVFATLDPTMRGLTLPSRRR 209          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A373AC07_9FIRM (GTPase HflX n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A373AC07_9FIRM)

HSP 1 Score: 103 bits (256), Expect = 2.370e-23
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPS 384
            +VELA LKY+ A LV G GS   R GGGIGT G  GEK ++  RRL+++R A+++R+L +V+R R   RS R R+  A +A+VGYTN GKS+L+N L         V   +++F TLDPT R L LPS
Sbjct:  127 QVELAQLKYRQARLV-GLGSSLSRLGGGIGTRG-PGEKKLEMDRRLIKSRIAQLNRELDEVKRHREVTRSRRSRKSTAVIAIVGYTNAGKSTLLNTLT-----GAQVLEEDKLFATLDPTTRILELPS 247          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A2S6R5U1_9PROT (GTPase HflX n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R5U1_9PROT)

HSP 1 Score: 103 bits (256), Expect = 2.570e-23
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLPSR 387
            +VELA L Y+ + LV+ S +  +RQ GG G +GG GE  I+  RR LR+R A + R+L DV R R   R++R R     VALVGYTN GKS+L N+L         V AR++VF TLDPT+R+L LPSR
Sbjct:  127 QVELAALSYQRSRLVR-SWTHLERQRGGFGFLGGPGETQIEADRRQLRDRIARLKRELNDVARTRSLHRAARQRVPYPVVALVGYTNAGKSTLFNRLTGAE-----VDARDQVFATLDPTMRTLKLPSR 249          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A6G7ZJQ7_9SPHN (GTPase HflX n=1 Tax=Sphingomonas sp. HDW15A TaxID=2714942 RepID=A0A6G7ZJQ7_9SPHN)

HSP 1 Score: 102 bits (255), Expect = 3.450e-23
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTLP 381
            +VELA L Y+A  LV+ S +  +RQ GG G +GG GE  I+  RRL+RNR A++ R+L+DV R RG  R  R R     +ALVGYTN GKS+L N++      +  V A + +F TLDPT+R + LP
Sbjct:  134 QVELAHLDYQAGRLVR-SWTHLERQRGGFGFLGGPGETQIEADRRLIRNRMAKIRRELEDVRRTRGLHRERRQRAPWPVIALVGYTNAGKSTLFNRMT-----RANVMAEDLLFATLDPTMREIRLP 254          
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Match: A0A1Y3QA70_9FIRM (GTPase HflX n=1 Tax=Firmicutes bacterium ZCTH02-B6 TaxID=1861639 RepID=A0A1Y3QA70_9FIRM)

HSP 1 Score: 101 bits (252), Expect = 4.640e-23
Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 KVELAMLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVHRQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKGMVQARNRVFDTLDPTVRSLTL 378
            +VELA L Y+   L  G+G+   R GGGIGT G  GE  ++T RR +R R A + RQL+DV R R  QR+ R R     +ALVGYTN GKS+LMN L     R G++ A NR+F TLDPTVR LTL
Sbjct:  118 QVELAQLTYQLTRLA-GAGAALSRLGGGIGTRG-PGETKLETDRRRIRRRIAMIRRQLEDVRRTRAVQRAGRRRTGLPVIALVGYTNAGKSTLMNALT----RAGVL-AENRLFATLDPTVRRLTL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84192.19794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZG8_9PHAE5.110e-6878.88Hflx-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A1V5MDB5_9FIRM3.360e-2550.78GTPase HflX n=1 Tax=Firmicutes bacterium ADurb.Bin... [more]
W4VCL7_9FIRM2.100e-2450.39GTPase HflX n=1 Tax=Acetivibrio thermocellus JCM 2... [more]
A0A7X8JZ49_9CLOT3.940e-2450.00GTPase HflX n=1 Tax=Clostridiaceae bacterium TaxID... [more]
UPI0001E2D92D4.220e-2450.78GTPase HflX n=1 Tax=Acetivibrio cellulolyticus Tax... [more]
A0A2S6R5J5_9PROT6.510e-2448.85GTPase HflX (Fragment) n=1 Tax=Alphaproteobacteria... [more]
A0A373AC07_9FIRM2.370e-2349.22GTPase HflX n=3 Tax=Eubacteriales TaxID=186802 Rep... [more]
A0A2S6R5U1_9PROT2.570e-2349.61GTPase HflX n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A6G7ZJQ7_9SPHN3.450e-2347.24GTPase HflX n=1 Tax=Sphingomonas sp. HDW15A TaxID=... [more]
A0A1Y3QA70_9FIRM4.640e-2352.38GTPase HflX n=1 Tax=Firmicutes bacterium ZCTH02-B6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84192contigEcto-sp13_S_contig84192:46..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score218.8
Seed ortholog evalue1.5e-54
Seed eggNOG ortholog2880.D7FHX0
Model size396
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ribosome binding
EggNOG OGsCOG2262@1,KOG0410@2759
Ec32 ortholog descriptionMHflX, mitochondrial HflX GTPase
Ec32 orthologEc-12_006200.3
Cds size381
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.703028-CDS-Ecto-sp13_S_contig84192:45..1341681464111.703028-CDS-Ecto-sp13_S_contig84192:45..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84192 46..134 -
1681464111.7156706-CDS-Ecto-sp13_S_contig84192:230..5221681464111.7156706-CDS-Ecto-sp13_S_contig84192:230..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84192 231..522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.7243338-UTR-Ecto-sp13_S_contig84192:522..5371681464111.7243338-UTR-Ecto-sp13_S_contig84192:522..537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig84192 523..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84192.19794.1prot_Ecto-sp13_S_contig84192.19794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84192 46..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84192.19794.1

>prot_Ecto-sp13_S_contig84192.19794.1 ID=prot_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MLKYKAAHLVKGSGSGFDRQGGGIGTMGGSGEKAIDTQRRLLRNRTAEVH
RQLKDVERRRGFQRSSRDRRLEASVALVGYTNVGKSSLMNQLALGRHRKG
MVQARNRVFDTLDPTVRSLTLPSRVR*
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mRNA from alignment at Ecto-sp13_S_contig84192:46..537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84192.19794.1 ID=mRNA_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84192:46..537- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGAGCTTGCAATGCTCAAGTACAAAGCGGCCCATCTTGTGAAGGG CTCGGGCAGCGGCTTCGATCGCCAGGGCGGTGGCATCGGGACCATGGGCG GCAGCGGCGAGAAGGCGATCGACACGCAACGCCGGCTGCTGCGGAATCGC ACGGCCGAGGTCCATCGCCAGCTCAAGGACGTCGAGCGCCGGCGAGGTTT CCAACGTAGCTCTCGGGATCGAAGGCTTGAAGCTAGCGTGGCTCTCGTGG GCTACACCAACGTGGGCAAGTCTTCGCTCATGAACCAGCTGGCGCTAGGG CGGCATAGTACTCGCGGCGTCGGAGGCGGAGGGGCTAATCGAGAAGGAAA AGGCGGCGAAAAAGCAAGGCGCTTCGAAGGGGCCAGCGGCGGAGGGGGGA AAGGGAAGGGCATGGTGCAGGCTCGGAACCGAGTGTTCGACACACTGGAT CCGACCGTCCGATCGTTAACGTTACCGTCACGCGTAAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84192:46..537-

>mRNA_Ecto-sp13_S_contig84192.19794.1 ID=mRNA_Ecto-sp13_S_contig84192.19794.1|Name=mRNA_Ecto-sp13_S_contig84192.19794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84192:46..537- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGTACAAAGCGGCCCATCTTGTGAAGGGCTCGGGCAGCGGCTT
CGATCGCCAGGGCGGTGGCATCGGGACCATGGGCGGCAGCGGCGAGAAGG
CGATCGACACGCAACGCCGGCTGCTGCGGAATCGCACGGCCGAGGTCCAT
CGCCAGCTCAAGGACGTCGAGCGCCGGCGAGGTTTCCAACGTAGCTCTCG
GGATCGAAGGCTTGAAGCTAGCGTGGCTCTCGTGGGCTACACCAACGTGG
GCAAGTCTTCGCTCATGAACCAGCTGGCGCTAGGGCGGCATAGGAAGGGC
ATGGTGCAGGCTCGGAACCGAGTGTTCGACACACTGGATCCGACCGTCCG
ATCGTTAACGTTACCGTCACGCGTAAGGTAA
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