mRNA_Ecto-sp13_S_contig84092.19784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84092.19784.1
Unique NamemRNA_Ecto-sp13_S_contig84092.19784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: D8LMU2_ECTSI (Ribosomal protein L11 methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU2_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.490e-17
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
            GGEEVVDYGTGSGVLA AA VLGAKHVTA+DIDVEILAHARQNFL+ 
Sbjct:  353 GGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLN 399          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI0009A785B6 (50S ribosomal protein L11 methyltransferase n=1 Tax=Provencibacterium massiliense TaxID=1841868 RepID=UPI0009A785B6)

HSP 1 Score: 57.0 bits (136), Expect = 4.040e-8
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVGCYLTRAQ 162
            GGEEV+D G GSG+L +AAA+LGAK VTAVDID   +  AR+NF     L R Q
Sbjct:  180 GGEEVLDMGCGSGILGIAAALLGAKGVTAVDIDENSVRIARENFAQNRVLDRVQ 233          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A1G5HWC4_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Nitrosospira sp. Nl5 TaxID=200120 RepID=A0A1G5HWC4_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-7
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG-CYLTRA 159
            GGE+V+DYG GSG+LA+AA+ LGA HV  +DID + +A +R+N ++  C  T+A
Sbjct:  157 GGEDVLDYGCGSGILAIAASKLGASHVVGIDIDPQAVAASRKNAIINQCDETKA 210          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A1I5EKW3_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Nitrosospira briensis TaxID=35799 RepID=A0A1I5EKW3_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
            GGE+V+DYG GSG+LA+AA  LGA+HV  +DID + +A +RQN ++ 
Sbjct:  164 GGEDVLDYGCGSGILAIAALKLGARHVVGIDIDPQAVAASRQNAVLN 210          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A286C1K3_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=unclassified Nitrosovibrio TaxID=2624428 RepID=A0A286C1K3_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG-CYLTRAQ 162
            GGE+V+DYG GSG+LA+AA  LGA+HV  +DID + +A +RQN  +  C  T A+
Sbjct:  164 GGEDVLDYGCGSGILAIAALKLGARHVVGIDIDPQAVAASRQNATLNQCNETMAE 218          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A3A0EJ85_9BURK (Ribosomal protein L11 methyltransferase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3A0EJ85_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 2.620e-7
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
            GGE V+DYG GSG+LA+AAA LGA  V A+DID + LA AR+N  V 
Sbjct:  173 GGERVIDYGCGSGILAIAAARLGAASVCAIDIDPQALASARRNAAVN 219          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI00189D52C2 (50S ribosomal protein L11 methyltransferase n=1 Tax=Desulfallas sp. Bu1-1 TaxID=2787620 RepID=UPI00189D52C2)

HSP 1 Score: 54.7 bits (130), Expect = 2.620e-7
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
            GGEEV D GTGSG+LAVAAA+LGA+ VTAVDID   +  AR+N
Sbjct:  167 GGEEVYDVGTGSGILAVAAALLGARRVTAVDIDELAVRTAREN 209          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI001943CB4A (50S ribosomal protein L11 methyltransferase n=2 Tax=Lacticaseibacillus TaxID=2759736 RepID=UPI001943CB4A)

HSP 1 Score: 54.7 bits (130), Expect = 2.670e-7
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
            GGEEV+D GTGSG+LA+AA +LGAKHV A DID + +A+A  N
Sbjct:  175 GGEEVLDVGTGSGILAIAARMLGAKHVLATDIDDKAVANAEAN 217          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI0010A8D519 (50S ribosomal protein L11 methyltransferase n=1 Tax=Paenibacillus dokdonensis TaxID=2567944 RepID=UPI0010A8D519)

HSP 1 Score: 54.3 bits (129), Expect = 3.700e-7
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
            GGEE++D GTGSG+LA+ A +LGAKHV A+D+D   +A A++N ++ 
Sbjct:  175 GGEEIIDVGTGSGILAIGAVLLGAKHVLALDLDPVAVAIAKENVMLN 221          
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI001C3AE58A (50S ribosomal protein L11 methyltransferase n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001C3AE58A)

HSP 1 Score: 54.3 bits (129), Expect = 3.710e-7
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
            GGEEV+D GTGSGVLA+AAA LGAKHV A+D+D   ++ A +N
Sbjct:  174 GGEEVIDVGTGSGVLAIAAAKLGAKHVLALDLDPVAVSSATEN 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMU2_ECTSI6.490e-1789.36Ribosomal protein L11 methyltransferase n=1 Tax=Ec... [more]
UPI0009A785B64.040e-859.2650S ribosomal protein L11 methyltransferase n=1 Ta... [more]
A0A1G5HWC4_9PROT1.360e-751.85Ribosomal protein L11 methyltransferase n=2 Tax=Ni... [more]
A0A1I5EKW3_9PROT1.900e-755.32Ribosomal protein L11 methyltransferase n=2 Tax=Ni... [more]
A0A286C1K3_9PROT1.900e-752.73Ribosomal protein L11 methyltransferase n=2 Tax=un... [more]
A0A3A0EJ85_9BURK2.620e-761.70Ribosomal protein L11 methyltransferase n=2 Tax=Pr... [more]
UPI00189D52C22.620e-769.7750S ribosomal protein L11 methyltransferase n=1 Ta... [more]
UPI001943CB4A2.670e-765.1250S ribosomal protein L11 methyltransferase n=2 Ta... [more]
UPI0010A8D5193.700e-753.1950S ribosomal protein L11 methyltransferase n=1 Ta... [more]
UPI001C3AE58A3.710e-765.1250S ribosomal protein L11 methyltransferase n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84092contigEcto-sp13_S_contig84092:28..189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.8
Seed ortholog evalue5.4e-14
Seed eggNOG ortholog2880.D8LMU2
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2S89S@2759,COG2264@1
Cds size162
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464110.9749222-CDS-Ecto-sp13_S_contig84092:27..1891681464110.9749222-CDS-Ecto-sp13_S_contig84092:27..189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84092 28..189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84092.19784.1prot_Ecto-sp13_S_contig84092.19784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84092 28..189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84092.19784.1

>prot_Ecto-sp13_S_contig84092.19784.1 ID=prot_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVGCYL
TRAQ
back to top

mRNA from alignment at Ecto-sp13_S_contig84092:28..189-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84092.19784.1 ID=mRNA_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84092:28..189- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGGAAGAGGTGGTGGACTACGGGACAGGTTCAGGGGTGCTGGCGGT GGCGGCGGCGGTACTTGGGGCGAAGCACGTCACCGCGGTCGACATCGACG TCGAGATCCTCGCGCACGCGAGGCAGAACTTTCTTGTGGGGTGTTATTTG ACTCGTGCGCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84092:28..189-

>mRNA_Ecto-sp13_S_contig84092.19784.1 ID=mRNA_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84092:28..189- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGGAAGAGGTGGTGGACTACGGGACAGGTTCAGGGGTGCTGGCGGT
GGCGGCGGCGGTACTTGGGGCGAAGCACGTCACCGCGGTCGACATCGACG
TCGAGATCCTCGCGCACGCGAGGCAGAACTTTCTTGTGGGGTGTTATTTG
ACTCGTGCGCAA
back to top