mRNA_Ecto-sp13_S_contig84092.19784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: D8LMU2_ECTSI (Ribosomal protein L11 methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU2_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 6.490e-17 Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
GGEEVVDYGTGSGVLA AA VLGAKHVTA+DIDVEILAHARQNFL+
Sbjct: 353 GGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLN 399
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI0009A785B6 (50S ribosomal protein L11 methyltransferase n=1 Tax=Provencibacterium massiliense TaxID=1841868 RepID=UPI0009A785B6) HSP 1 Score: 57.0 bits (136), Expect = 4.040e-8 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVGCYLTRAQ 162
GGEEV+D G GSG+L +AAA+LGAK VTAVDID + AR+NF L R Q
Sbjct: 180 GGEEVLDMGCGSGILGIAAALLGAKGVTAVDIDENSVRIARENFAQNRVLDRVQ 233
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A1G5HWC4_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Nitrosospira sp. Nl5 TaxID=200120 RepID=A0A1G5HWC4_9PROT) HSP 1 Score: 55.5 bits (132), Expect = 1.360e-7 Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG-CYLTRA 159
GGE+V+DYG GSG+LA+AA+ LGA HV +DID + +A +R+N ++ C T+A
Sbjct: 157 GGEDVLDYGCGSGILAIAASKLGASHVVGIDIDPQAVAASRKNAIINQCDETKA 210
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A1I5EKW3_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Nitrosospira briensis TaxID=35799 RepID=A0A1I5EKW3_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7 Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
GGE+V+DYG GSG+LA+AA LGA+HV +DID + +A +RQN ++
Sbjct: 164 GGEDVLDYGCGSGILAIAALKLGARHVVGIDIDPQAVAASRQNAVLN 210
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A286C1K3_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=unclassified Nitrosovibrio TaxID=2624428 RepID=A0A286C1K3_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7 Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG-CYLTRAQ 162
GGE+V+DYG GSG+LA+AA LGA+HV +DID + +A +RQN + C T A+
Sbjct: 164 GGEDVLDYGCGSGILAIAALKLGARHVVGIDIDPQAVAASRQNATLNQCNETMAE 218
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: A0A3A0EJ85_9BURK (Ribosomal protein L11 methyltransferase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3A0EJ85_9BURK) HSP 1 Score: 54.7 bits (130), Expect = 2.620e-7 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
GGE V+DYG GSG+LA+AAA LGA V A+DID + LA AR+N V
Sbjct: 173 GGERVIDYGCGSGILAIAAARLGAASVCAIDIDPQALASARRNAAVN 219
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI00189D52C2 (50S ribosomal protein L11 methyltransferase n=1 Tax=Desulfallas sp. Bu1-1 TaxID=2787620 RepID=UPI00189D52C2) HSP 1 Score: 54.7 bits (130), Expect = 2.620e-7 Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
GGEEV D GTGSG+LAVAAA+LGA+ VTAVDID + AR+N
Sbjct: 167 GGEEVYDVGTGSGILAVAAALLGARRVTAVDIDELAVRTAREN 209
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI001943CB4A (50S ribosomal protein L11 methyltransferase n=2 Tax=Lacticaseibacillus TaxID=2759736 RepID=UPI001943CB4A) HSP 1 Score: 54.7 bits (130), Expect = 2.670e-7 Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
GGEEV+D GTGSG+LA+AA +LGAKHV A DID + +A+A N
Sbjct: 175 GGEEVLDVGTGSGILAIAARMLGAKHVLATDIDDKAVANAEAN 217
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI0010A8D519 (50S ribosomal protein L11 methyltransferase n=1 Tax=Paenibacillus dokdonensis TaxID=2567944 RepID=UPI0010A8D519) HSP 1 Score: 54.3 bits (129), Expect = 3.700e-7 Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVG 141
GGEE++D GTGSG+LA+ A +LGAKHV A+D+D +A A++N ++
Sbjct: 175 GGEEIIDVGTGSGILAIGAVLLGAKHVLALDLDPVAVAIAKENVMLN 221
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Match: UPI001C3AE58A (50S ribosomal protein L11 methyltransferase n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001C3AE58A) HSP 1 Score: 54.3 bits (129), Expect = 3.710e-7 Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQN 129
GGEEV+D GTGSGVLA+AAA LGAKHV A+D+D ++ A +N
Sbjct: 174 GGEEVIDVGTGSGVLAIAAAKLGAKHVLALDLDPVAVSSATEN 216 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84092.19784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig84092.19784.1 >prot_Ecto-sp13_S_contig84092.19784.1 ID=prot_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp GGEEVVDYGTGSGVLAVAAAVLGAKHVTAVDIDVEILAHARQNFLVGCYLback to top mRNA from alignment at Ecto-sp13_S_contig84092:28..189- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig84092.19784.1 ID=mRNA_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84092:28..189- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84092:28..189- >mRNA_Ecto-sp13_S_contig84092.19784.1 ID=mRNA_Ecto-sp13_S_contig84092.19784.1|Name=mRNA_Ecto-sp13_S_contig84092.19784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84092:28..189- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |