mRNA_Ecto-sp13_S_contig8382.19748.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8382.19748.1
Unique NamemRNA_Ecto-sp13_S_contig8382.19748.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: D8LHY7_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.640e-24
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    1 SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            SEET DLSWLLYETALTASGFQ     VEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE
Sbjct:  693 SEETKDLSWLLYETALTASGFQ-----VEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 749          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: G3G5W9_9PHAE (Heat shock protein 90 family (Fragment) n=24 Tax=Fucaceae TaxID=3010 RepID=G3G5W9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.100e-22
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            SEET D+SWLLY+TALTASGFQ     VEDTE+FA+RVQR MAKTLNLSS++LL+E EIPDE
Sbjct:   24 SEETKDMSWLLYDTALTASGFQ-----VEDTESFASRVQRIMAKTLNLSSLELLDEAEIPDE 80          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A812QET3_SYMMI (HSP90B1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QET3_SYMMI)

HSP 1 Score: 60.8 bits (146), Expect = 2.650e-9
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 EETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEME 174
            E TADL+WLLY+TAL +SGF        +TE FA R+ R MAK +N+ SMDL EE+E
Sbjct:  381 EYTADLAWLLYDTALLSSGFTQT-----ETELFAERMYRTMAKNMNIESMDLAEEIE 432          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A3M6VNG1_9STRA (HATPase_c domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNG1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-7
Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            +EET DL+WLLY+TAL  SGF      + DT+ F++R+ R M  ++ ++S++L  E+E+P++
Sbjct:  744 NEETKDLAWLLYDTALINSGFD-----LSDTDHFSSRIHRIMRNSMGITSLELEPEIEVPED 800          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A0P1AEL2_PLAHL (Heat shock protein 90 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEL2_PLAHL)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 EETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            EET DL+WLLY+TAL  SGF      + DT  F+ RV R M  ++ ++S+DL  E+EIP++
Sbjct:  741 EETEDLAWLLYDTALVNSGFD-----MADTSHFSARVHRIMKSSMGIASLDLEPEIEIPED 796          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: F0Y644_AURAN (HATPase_c domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y644_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.140e-7
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    4 EETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            E T+DLSWLL + AL  SGF+A      D  AF+ R  R +   L++ SMDLL E+E+PDE
Sbjct:  692 EYTSDLSWLLLDNALMQSGFEA-----SDVAAFSERALRILKSGLSVESMDLLPEIEVPDE 747          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A835YKX1_9STRA (Hsp90 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.930e-7
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            S E  DL+WLLY+TA+ ASGF      +ED  +F++R+ R + +TL + S+DLL E E PDE
Sbjct:  708 SAEAEDLAWLLYDTAMAASGFT-----MEDAGSFSSRMYRVLGQTLKVESLDLLPEAE-PDE 763          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A6G0WLA2_9STRA (HATPase_c domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLA2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.930e-7
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            S ET DLSWLLY+ ALT SGF      ++D + FA+RV R M  T+ L S++L  E+ +P E
Sbjct:  713 STETQDLSWLLYDAALTNSGFA-----MDDVDHFASRVYRLMKHTMGLDSLELEPELALPAE 769          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: A0A484E8C8_BRELC (HATPase_c domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8C8_BRELC)

HSP 1 Score: 55.1 bits (131), Expect = 2.940e-7
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    4 EETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            EET DL+WLLY+TAL  SGF      + DT  F+ RV R M   + + S +L  E+E+P+E
Sbjct:  754 EETKDLAWLLYDTALVNSGFD-----MSDTSQFSARVHRVMRSVMGIDSFELEPEIEVPEE 809          
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Match: W4FIT1_9STRA (HATPase_c domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIT1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.010e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 ETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 186
            ET DLSWLLY+ ALT SGF      ++D + FA+RV R M  T+ L S+DL  E+ +P E
Sbjct:  724 ETHDLSWLLYDAALTNSGFA-----MDDVDHFASRVYRLMKTTMGLDSLDLDPEINLPAE 778          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8382.19748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LHY7_ECTSI4.640e-2490.32Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
G3G5W9_9PHAE6.100e-2275.81Heat shock protein 90 family (Fragment) n=24 Tax=F... [more]
A0A812QET3_SYMMI2.650e-956.14HSP90B1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A3M6VNG1_9STRA1.150e-741.94HATPase_c domain-containing protein n=2 Tax=Perono... [more]
A0A0P1AEL2_PLAHL1.150e-747.54Heat shock protein 90 n=1 Tax=Plasmopara halstedii... [more]
F0Y644_AURAN2.140e-749.18HATPase_c domain-containing protein n=1 Tax=Aureoc... [more]
A0A835YKX1_9STRA2.930e-748.39Hsp90 protein-domain-containing protein n=1 Tax=Tr... [more]
A0A6G0WLA2_9STRA2.930e-748.39HATPase_c domain-containing protein n=1 Tax=Aphano... [more]
A0A484E8C8_BRELC2.940e-745.90HATPase_c domain-containing protein n=1 Tax=Bremia... [more]
W4FIT1_9STRA4.010e-750.00HATPase_c domain-containing protein n=6 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8382contigEcto-sp13_S_contig8382:1..728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.3616068-CDS-Ecto-sp13_S_contig8382:0..811681464108.3616068-CDS-Ecto-sp13_S_contig8382:0..81Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8382 1..81 +
1681464108.3715441-CDS-Ecto-sp13_S_contig8382:623..7281681464108.3715441-CDS-Ecto-sp13_S_contig8382:623..728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8382 624..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8382.19748.1prot_Ecto-sp13_S_contig8382.19748.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8382 1..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8382.19748.1

>prot_Ecto-sp13_S_contig8382.19748.1 ID=prot_Ecto-sp13_S_contig8382.19748.1|Name=mRNA_Ecto-sp13_S_contig8382.19748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
SEETADLSWLLYETALTASGFQARRLPVEDTEAFANRVQRAMAKTLNLSS
MDLLEEMEIPDE
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mRNA from alignment at Ecto-sp13_S_contig8382:1..728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8382.19748.1 ID=mRNA_Ecto-sp13_S_contig8382.19748.1|Name=mRNA_Ecto-sp13_S_contig8382.19748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8382:1..728+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAGGAGACGGCGGACTTGTCCTGGCTTCTTTACGAGACTGCTCTCAC TGCTTCGGGTTTCCAGGCAAGGCGGCTTCCCGTGTGTGTGTGTGTGTGTG TGTGTGTGTTTTTCTTTTTTTTCTTGTGCCATCTTTTCGGCTCCAGTATA TTTACTCACCTTTTGGTGTGTATTTGACGCATCAAAACGGAACACACAGG AAGAAGGCGGATGACAGCGCCGTTTCCTTGTTGTCCCACGTCCCCGGGGT ACTTGCGTTTCGCGTGAAGGGTTCAGCGTTGAGTTCCGTCCATCTGCATT TTGTACAAACACGAATTGATCGCTGCCCACCCTCAGACTTGCAACTTGGG CACCCCGGAGATGGAATCTGAACCCACACCCTGCCAAGAGTCAAAGTAGG TTGACGAGATTGTCCACTTCATGCAGACTACCAGTGCGATCGGTCCGTAG CACTCATCAAGTGACGCATTGTCAACATGGGTCTCGTGTAGGTCGGACTT CGGCCTTTCTGCGTGTTACATAGACGTGTATCTTCATCAACAGCTCGCGA TACTGGTGCTGTTCTAAGTCTTGATGATGGCACGGCAGCTGATGAGAGGC TCGTGTGGATGTTGTCCTTCCAGGTGGAAGATACCGAGGCATTCGCCAAC CGGGTACAGCGCGCCATGGCCAAGACCCTCAACCTCAGCAGCATGGACCT ACTCGAGGAGATGGAGATCCCAGATGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8382:1..728+

>mRNA_Ecto-sp13_S_contig8382.19748.1 ID=mRNA_Ecto-sp13_S_contig8382.19748.1|Name=mRNA_Ecto-sp13_S_contig8382.19748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8382:1..728+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAGGAGACGGCGGACTTGTCCTGGCTTCTTTACGAGACTGCTCTCAC
TGCTTCGGGTTTCCAGGCAAGGCGGCTTCCCGTGGAAGATACCGAGGCAT
TCGCCAACCGGGTACAGCGCGCCATGGCCAAGACCCTCAACCTCAGCAGC
ATGGACCTACTCGAGGAGATGGAGATCCCAGATGAG
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