mRNA_Ecto-sp13_S_contig83409.19704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83409.19704.1
Unique NamemRNA_Ecto-sp13_S_contig83409.19704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A3B0YBJ9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YBJ9_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 4.390e-14
Identity = 32/45 (71.11%), Postives = 33/45 (73.33%), Query Frame = 2
Query:    2 PYWSCSRWGLPCHLCHQRRGALLPHPFILTCQTRLVRRFAFCGTF 136
            P WSCS WGLPCH C QRRGALLPH F LT    L RR+ FCGTF
Sbjct:   43 PIWSCSGWGLPCHRCCQRRGALLPHHFTLTGAYAL-RRYIFCGTF 86          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A382B3P2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382B3P2_9ZZZZ)

HSP 1 Score: 66.6 bits (161), Expect = 5.980e-13
Identity = 34/48 (70.83%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 SLLVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSG--QAVCFLWHFP 138
            S LVLL VGFTLP + P TRCALTAPFHPY  DT     AV FLWHFP
Sbjct:   23 SYLVLLRVGFTLPFVLPPTRCALTAPFHPYRPDTRKCQSAVYFLWHFP 70          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A509MBY8_9ACTN (Uncharacterized protein n=3 Tax=Propionibacterium freudenreichii TaxID=1744 RepID=A0A509MBY8_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 7.800e-8
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 SLLVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSGQAVCFLWHFP 138
            S LVLL VGF LP+ SP  R +LT PFHPY      +AVCFLWH P
Sbjct:   63 SFLVLLRVGFALPTQSPAPRWSLTPPFHPY---PIARAVCFLWHCP 105          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A177G803_9PROT (Esterase/lipase n=2 Tax=Acetobacter malorum TaxID=178901 RepID=A0A177G803_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 27/46 (58.70%), Postives = 29/46 (63.04%), Query Frame = 2
Query:    2 PYWSCSRWGLPCHLCHQRRGALLPHPFILTCQTRLVRRFAFCGTFP 139
            P  SCSRWGLPC LC+QR GALLPH F LT        F+F   FP
Sbjct:   24 PIRSCSRWGLPCLLCYQRSGALLPHRFTLT--------FSFVPWFP 61          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A4BFS3_9GAMM (Uncharacterized protein n=1 Tax=Reinekea blandensis MED297 TaxID=314283 RepID=A4BFS3_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.200e-7
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    7 LVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSGQAVCFLWHFP 138
            +VLL VGFT+P+L P +RCALTAPFHPY       AV  L H+P
Sbjct:    1 MVLLQVGFTMPTLLPVSRCALTAPFHPY--QARSLAVYSLLHWP 42          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A1E3GPF8_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga muralis TaxID=291169 RepID=A0A1E3GPF8_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.270e-7
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 1
Query:    7 LVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSG 108
            LVLL VGFT+P L PE RCALTAPFHPYL   SG
Sbjct:   53 LVLLLVGFTMPLLLPEARCALTAPFHPYLKIHSG 86          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: F8BVL8_AFIC5 (Uncharacterized protein n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=F8BVL8_AFIC5)

HSP 1 Score: 52.4 bits (124), Expect = 1.670e-7
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   10 VLLPVGFTLPSLSPETRCALTAPFHPYLSDTSGQAVCFLWHF 135
            VLLPVGF +P   PETRCALTAPFHPY +  +G      W F
Sbjct:   20 VLLPVGFAMPPPLPETRCALTAPFHPYRATLAGA-----WRF 56          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: A0A1B2AFP3_9SPHN (Uncharacterized protein n=1 Tax=Tsuneonella dongtanensis TaxID=692370 RepID=A0A1B2AFP3_9SPHN)

HSP 1 Score: 53.9 bits (128), Expect = 2.030e-7
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 3
Query:    9 GLAPGGVYPAISVTRDAVRSYRTLSSLPVRHVWSGGLLSVALSL 140
            GLAPGGV  A  VTR  VRSYRTLS+LP+     GGLLSVALSL
Sbjct:   72 GLAPGGVCRASPVTRTPVRSYRTLSALPLER---GGLLSVALSL 112          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: Q1YSE1_9GAMM (Uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 TaxID=314287 RepID=Q1YSE1_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 1.260e-6
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    7 LVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSGQ 111
            LVLL VGFTLP L P  RCALTAPFHPYL   +  
Sbjct:   48 LVLLRVGFTLPLLLPAARCALTAPFHPYLCSRTNH 82          
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Match: D3NWD1_AZOS1 (Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) TaxID=137722 RepID=D3NWD1_AZOS1)

HSP 1 Score: 50.4 bits (119), Expect = 2.410e-6
Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 2
Query:    2 PYWSCSRWGLPCHLCHQRRGALLPHPFILTC 94
            P  SCSRWGLPC    + RGALLPHPF LTC
Sbjct:  114 PIRSCSRWGLPCRPRCRVRGALLPHPFTLTC 144          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83409.19704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A3B0YBJ9_9ZZZZ4.390e-1471.11Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A382B3P2_9ZZZZ5.980e-1370.83Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A509MBY8_9ACTN7.800e-860.87Uncharacterized protein n=3 Tax=Propionibacterium ... [more]
A0A177G803_9PROT1.070e-758.70Esterase/lipase n=2 Tax=Acetobacter malorum TaxID=... [more]
A4BFS3_9GAMM1.200e-759.09Uncharacterized protein n=1 Tax=Reinekea blandensi... [more]
A0A1E3GPF8_9GAMM1.270e-776.47Uncharacterized protein n=1 Tax=Methylophaga mural... [more]
F8BVL8_AFIC51.670e-759.52Uncharacterized protein n=1 Tax=Afipia carboxidovo... [more]
A0A1B2AFP3_9SPHN2.030e-770.45Uncharacterized protein n=1 Tax=Tsuneonella dongta... [more]
Q1YSE1_9GAMM1.260e-668.57Uncharacterized protein n=1 Tax=gamma proteobacter... [more]
D3NWD1_AZOS12.410e-670.97Uncharacterized protein n=1 Tax=Azospirillum sp. (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83409contigEcto-sp13_S_contig83409:2..142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size141
Hectar predicted targeting categorysignal peptide
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.5111647-CDS-Ecto-sp13_S_contig83409:1..1421681464104.5111647-CDS-Ecto-sp13_S_contig83409:1..142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83409 2..142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83409.19704.1prot_Ecto-sp13_S_contig83409.19704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83409 2..142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83409.19704.1

>prot_Ecto-sp13_S_contig83409.19704.1 ID=prot_Ecto-sp13_S_contig83409.19704.1|Name=mRNA_Ecto-sp13_S_contig83409.19704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
SLLVLLPVGFTLPSLSPETRCALTAPFHPYLSDTSGQAVCFLWHFP*
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mRNA from alignment at Ecto-sp13_S_contig83409:2..142-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83409.19704.1 ID=mRNA_Ecto-sp13_S_contig83409.19704.1|Name=mRNA_Ecto-sp13_S_contig83409.19704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83409:2..142- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCTATTGGTCTTGCTCCCGGTGGGGTTTACCCTGCCATCTCTGTCACC AGAGACGCGGTGCGCTCTTACCGCACCCTTTCATCCTTACCTGTCAGACA CGTCTGGTCAGGCGGTTTGCTTTCTGTGGCACTTTCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83409:2..142-

>mRNA_Ecto-sp13_S_contig83409.19704.1 ID=mRNA_Ecto-sp13_S_contig83409.19704.1|Name=mRNA_Ecto-sp13_S_contig83409.19704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83409:2..142- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCTATTGGTCTTGCTCCCGGTGGGGTTTACCCTGCCATCTCTGTCACC
AGAGACGCGGTGCGCTCTTACCGCACCCTTTCATCCTTACCTGTCAGACA
CGTCTGGTCAGGCGGTTTGCTTTCTGTGGCACTTTCCCTGA
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