mRNA_Ecto-sp13_S_contig8336.19699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: D7FMA9_ECTSI (Dehydrogenase/reductase SDR family member 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA9_ECTSI) HSP 1 Score: 548 bits (1413), Expect = 1.280e-190 Identity = 278/300 (92.67%), Postives = 283/300 (94.33%), Query Frame = 1
Query: 1 QCDAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIPGKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAA-PASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGTVSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLEESERVV 897
+C AACEDIRRRVPGAALD+L+LDLSSVESIRGFVETFHKTGLPLHVLVNNAG KPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAA PASA GHGDREQS ENVPGTGPS RIVNVGSRLEKRG+LWAAAVSDGG D AVPPGTRWF PPP KKHDAFGLY SSKLCNMLFTFELDRRLE ARSGGRRLVTANIVTPGIVNTKLGDGTVSPWVAWAG PLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDK EVPCSDASRDEDLARQLW+ATEQAVGLEESERVV
Sbjct: 83 KCAAACEDIRRRVPGAALDALSLDLSSVESIRGFVETFHKTGLPLHVLVNNAG----KPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAAPASAIGHGDREQSPENVPGTGPSSRIVNVGSRLEKRGNLWAAAVSDGGGDTAVPPGTRWFQPPPRKKHDAFGLYGSSKLCNMLFTFELDRRLEAARSGGRRLVTANIVTPGIVNTKLGDGTVSPWVAWAGAPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKNEVPCSDASRDEDLARQLWEATEQAVGLEESERVV 378
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A3M6UUN6_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UUN6_POCDA) HSP 1 Score: 144 bits (364), Expect = 3.570e-35 Identity = 108/296 (36.49%), Postives = 149/296 (50.34%), Query Frame = 1
Query: 1 QCDAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGI-IPGKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGTVSPWVA-WAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLEE 882
+ + A + IR +P A ++ + LDL+S+ SIR FV F K GLPLH+LVNNAGI IP T G E VNHLG F LT+LLL DL K+ G DR R+V + S G + + +++++ P + Y+ SKL N+LFT+EL +RLE S VTAN V PG+VNT L PW+ L L +T +GAE ++ A SPE+E G GK+F + + SD S ED+ R+LW A+ + G+ E
Sbjct: 71 EAEKAIKKIREELPQAEVEYMELDLASLASIRKFVMNFKKKGLPLHILVNNAGIMIPPYSKTEDGFELQFGVNHLGHFALTNLLLDDLIKS----------GSPDR------------CSRVVTLSSEAHIPGKINFEDLQ-----------SKYYYSP-------YSGYSQSKLANILFTYELQKRLEERESP----VTANAVHPGVVNTDLFQHI--PWIMRMPQNVLAYFLFKTPQQGAENSIYVALSPELESKG-GKYFVNCQSTQSSDESYSEDVQRRLWKASCELTGIPE 319
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A7Z9LQK3_9BACT (SDR family oxidoreductase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9LQK3_9BACT) HSP 1 Score: 140 bits (354), Expect = 3.370e-34 Identity = 110/304 (36.18%), Postives = 149/304 (49.01%), Query Frame = 1
Query: 13 ACEDIRRRVPGAA----------LDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIPGK-PGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSL-WAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGT---VSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLE 879
AC D+ R P A +D L LDL+S ESIR F +TF KT L VLVNNA ++P K T G E VNHLG FLLTHLLL L++ + PS R+V V S + G + + SD +K+ G Y +SKL N+LFTFEL RRLE VTAN + PG+VNT++ V P V +AG M ++KGA T + AT+PE+E + GK+F E CS ++D+++A +LW+ +EQ G++
Sbjct: 33 ACRDVERSQPVQAKIKKDSGSEKVDLLKLDLASQESIRSFADTFLKTYDRLDVLVNNAAVVPSKRQETAEGYEAQFGVNHLGHFLLTHLLLDRLKECA-------------------------PS-RVVTVASIVHTSGIINFDDLQSD-------------------EKYSIMGAYNNSKLANVLFTFELARRLEGTG------VTANCLHPGVVNTRIMRDLPIIVRPIVKFAG-----LFMLNSEKGAATSLHLATAPELESVT-GKYFDKCAESKCSSKAKDQEVASKLWELSEQFTGIQ 279
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A7Y7C9R3_9DELT (SDR family oxidoreductase n=6 Tax=Myxococcaceae TaxID=31 RepID=A0A7Y7C9R3_9DELT) HSP 1 Score: 140 bits (353), Expect = 5.530e-34 Identity = 96/293 (32.76%), Postives = 149/293 (50.85%), Query Frame = 1
Query: 10 AACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAG-IIPGKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGTVS--PWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLE 879
AA + + + V GA++D++ DLSS++++R +TF L VLVNNAG II + T+ G+E ++ NHL PFLLTHLL+ L+ A+ PA R+VN+ S + + G L + + +++D F +YA+SKL N+LFT L +RLE R VT N V PG+V + G T W+ G P +A+ GA+T ++ A+SPE++ + G F +K P + A+RD+ LA QLW + + G++
Sbjct: 48 AAVDAVNQVVAGASVDTILADLSSLQAVRALADTFRSRHSRLDVLVNNAGLIIDQRQVTVDGLEATLATNHLAPFLLTHLLMDTLK----ASGPA----------------------RVVNLSSDVHRIGKLDFSDLQS------------------ERRYDGFRVYANSKLANVLFTHSLSKRLEGTR------VTTNAVHPGVVRSGFGHNTKGYFRWIVKLGAPF----FLSAEGGAKTSIYLASSPEVDGVSGKYFIRCRKRKPSA-AARDDALAEQLWRESARLTGVQ 285
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: UPI001F220AF2 (SDR family oxidoreductase n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F220AF2) HSP 1 Score: 139 bits (349), Expect = 1.990e-33 Identity = 101/293 (34.47%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 10 AACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAG-IIPGKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGTVS--PWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLE 879
AA + +R PGA +DSL DLSS++++R +TF L VL+NNAG II + T+ G E ++ NHL PFLLT+LLL DL K S AA R++NV S + G L + +++D F +YA+SKL N+LFT L +RLE R VT N V PG+V+T G + W+ G P M +A GA+T ++ A+SPE+E + G F +K P + A+RD+ LA +LW + + G++
Sbjct: 48 AAVDAVRAHAPGAQVDSLLADLSSMKAVRELAQTFRSRYPRLDVLLNNAGLIIDRRQVTVDGFEATLATNHLAPFLLTNLLL-DLLKDSGAA-------------------------RVINVSSDVHHIGKLQFDDLQS------------------ERRYDGFRVYATSKLANLLFTRALAKRLEGTR------VTTNAVHPGVVSTGFGHNSQGFFKWLVKLGAPF----MLSAASGAKTSIYLASSPEVEGVTGQYFIRRRKRRPSA-AARDDALAERLWQESARLTGVK 285
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A402AQ45_9CHLR (Short-chain dehydrogenase n=1 Tax=Dictyobacter kobayashii TaxID=2014872 RepID=A0A402AQ45_9CHLR) HSP 1 Score: 138 bits (348), Expect = 2.750e-33 Identity = 102/299 (34.11%), Postives = 149/299 (49.83%), Query Frame = 1
Query: 7 DAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIPGKPG-TIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKL-GDGTVSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLEESERVV 897
+AA +++ + +D LT D+SS+ S+R + H+ LHVL+NNAG + K ++ G+E++ N++GPFLLT+LLL DL KASA A RI+NV S K GS+ + K++ AF +Y +SKL LFT+EL RRLE VT N + PG+V T GDG + G L +M T +KGA+T ++ ATSPE++ + GK+F K P S AS DE ++LW TEQ + + ++ V
Sbjct: 46 EAAQAEVKAQSGNDKVDLLTADMSSLASVRQLSQEVHEKYPQLHVLLNNAGGMNNKREVSVDGIERTFATNYVGPFLLTNLLL-DLLKASAPA-------------------------RIINVSSTAHKMGSIDFDDLQS------------------EKRYRAFPVYGTSKLALTLFTYELARRLEGTG------VTVNNLHPGVVGTSFFGDGLL--------GRLSKLVMLTPEKGAQTSIYLATSPEVDNVT-GKYFDKSKATPSSKASYDEQAGKRLWQVTEQLIEQKSNQGVT 285
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A2A5DP57_9BACT (Short-chain dehydrogenase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5DP57_9BACT) HSP 1 Score: 136 bits (342), Expect = 1.780e-32 Identity = 104/290 (35.86%), Postives = 144/290 (49.66%), Query Frame = 1
Query: 19 EDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIP-GKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGT---VSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGL 876
+ I+ +D L LDL+S+ SIR F F +T L VL+NNA IIP + T G E VNHLGPFLLTHLLL +++++ PS RIVNV S + +G++ + KK+ Y SKL N+LFT+EL RRLE SG VT N + PG+VNT + + P V AG M + ++GA T ++ +TSP+++ I GKFF + KE S S+DEDLA++LWD +E G+
Sbjct: 49 DQIKENTGSNKIDLLQLDLASLASIRDFANNFLETYPRLDVLINNAAIIPLSRQETQDGFESQFGVNHLGPFLLTHLLLDRIKESA-------------------------PS-RIVNVTSIMHHQGAIDFDNLQS------------------EKKYGTLDAYRQSKLGNVLFTYELARRLEG--SG----VTVNCLHPGVVNTGIARSVPFFLQPLVKLAG----KFFMLSPEQGAATSLYVSTSPDLDGIT-GKFFNESKETRSSKLSQDEDLAQRLWDVSENLTGI 283
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A661UTA2_9CHLR (Short-chain dehydrogenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661UTA2_9CHLR) HSP 1 Score: 134 bits (338), Expect = 7.720e-32 Identity = 106/293 (36.18%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 7 DAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAG-IIPGKPGTIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLG--DGTVSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGL 876
+AA DI++R ++ + D +S+ESIRGF E F L VLVNNAG I + T+ G E + VNHLG FL+T+LLL DL KASA A S V+ G+ L +G + ++ G + G+Y SKL N+LFT+EL RRLE SG VTAN + PG+V + G +G + V A L ++ +GA T + A SP++E + GK+F D KE P S AS DE+ AR+LW +E+ GL
Sbjct: 45 EAALADIKKRSGSDDIELMLADFASLESIRGFAEKFKANHDRLDVLVNNAGGINTSRSETLDGFETTFGVNHLGYFLVTNLLL-DLIKASAPARVVS-----------------------VSSGAHLRAKGMNFDDLNAEQG-------------------YSGMGVYGKSKLANVLFTYELARRLEG--SG----VTANCLHPGVVRSGFGQNNGGLIAIVFKAAYTLMTPFTKSNAQGAATSIHLAASPDVEGVT-GKYFADSKETPSSAASHDEEAARRLWKLSEKMTGL 287
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A6P1NVF1_9BACT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Nibribacter ruber TaxID=2698458 RepID=A0A6P1NVF1_9BACT) HSP 1 Score: 135 bits (339), Expect = 1.210e-31 Identity = 100/295 (33.90%), Postives = 141/295 (47.80%), Query Frame = 1
Query: 13 ACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIPGKPGTIR-GMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGDGTVSPWVAWAGGPLKAAL------MRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGL 876
A + I +VP A L DLSS+E +R + + VLVNNAGIIPG T + G+E + V+NHL PFLLT+LL+ +L A P RI+N+ S + G + A + + K + A YA SKL N+LFT+EL RR+E +T N V PG+V T G G+ G ++A L MRTA KGAET V+ ATSP + + GK+F DKK++ + + + AR+LW+ +E+ G
Sbjct: 91 AMDQIMAKVPHAQLQLHLADLSSLEEVRRLAQDLQAAYPVIDVLVNNAGIIPGLRSTSKEGLETAWVINHLAPFLLTNLLMDNLLAA--------------------------PQGRIINLTSEAHRLGQIDFAQLGN------------------PKHYSAITAYADSKLANILFTYELARRVEFTN------LTVNCVHPGVVATNFGKGS--------SGFVRALLFMGRLFMRTAAKGAETPVFLATSPSMATLS-GKYFKDKKQIKSAVGTYNAHTARRLWEVSEEQTGF 326
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Match: A0A6S7K1K4_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K1K4_PARCT) HSP 1 Score: 134 bits (338), Expect = 1.810e-31 Identity = 99/295 (33.56%), Postives = 149/295 (50.51%), Query Frame = 1
Query: 7 DAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNNAGIIPGKPG--TIRGMEQSMVVNHLGPFLLTHLLLPDLRKASAAAAPASAFGHGDREQSRENVPGTGPSPRIVNVGSRLEKRGSLWAAAVSDGGRDPAVPPGTRWFHPPPGKKHDAFGLYASSKLCNMLFTFELDRRLETARSGGRRLVTANIVTPGIVNTKLGD-GTVSPWVAWAGGPLKAALMRTADKGAETVVWAATSPEIEEIGGGKFFGDKKEVPCSDASRDEDLARQLWDATEQAVGLEE 882
D A +IR +V A + LDLSS+ S+R FV+ F +T LH+L+NNAGI G P + G E VNHLG FLLT+LL+ L A +AP+ R++ V S L KRG++ +S K + YA SKL N+LF EL++RL + VT N + PGIV T+L T +P + + PL +++T +GA+T + AT P ++E+ G +FGD K+ C+ ++D+ A++LW+ +E+ GL +
Sbjct: 88 DKAASEIRSQVENAQVAVYFLDLSSLNSVRKFVQDFVRTENGLHILINNAGIY-GCPHWKSEDGYEMQFAVNHLGHFLLTNLLMDTL----AQSAPS----------------------RVLVVTSSLHKRGTIEFDDLSG------------------DKDYKPRKAYAQSKLANLLFAHELNKRLPSG-------VTVNSLHPGIVWTELARYSTFNPILRYLAYPLLLLILKTPWQGAQTTTYCATEPSLQEVS-GLYFGDCKQEECAQHAKDDGTAKKLWEVSEKMTGLHQ 329 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8336.19699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8336.19699.1 >prot_Ecto-sp13_S_contig8336.19699.1 ID=prot_Ecto-sp13_S_contig8336.19699.1|Name=mRNA_Ecto-sp13_S_contig8336.19699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp QCDAACEDIRRRVPGAALDSLTLDLSSVESIRGFVETFHKTGLPLHVLVNback to top mRNA from alignment at Ecto-sp13_S_contig8336:4442..6907- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8336.19699.1 ID=mRNA_Ecto-sp13_S_contig8336.19699.1|Name=mRNA_Ecto-sp13_S_contig8336.19699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8336:4442..6907- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8336:4442..6907- >mRNA_Ecto-sp13_S_contig8336.19699.1 ID=mRNA_Ecto-sp13_S_contig8336.19699.1|Name=mRNA_Ecto-sp13_S_contig8336.19699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8336:4442..6907- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |