mRNA_Ecto-sp13_S_contig8326.19686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8326.19686.1
Unique NamemRNA_Ecto-sp13_S_contig8326.19686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8326.19686.1 vs. uniprot
Match: D7FTJ0_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ0_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.800e-53
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 3 
Query:    6 MAWGAVLTQWYVAAATAYTILSLALGQELDEPYTDADEDRLKSFWDTRVEVDPCCDVILGEPLEITVWFRTDGNFTESVALYVDLPR 266
            MAWGAVLTQWYV AATAY IL LALGQELDEPYTDADEDRLKSFWDTRVEVDPCCDVILGEPLEITVWFRTDGNFTES ALYVDLPR
Sbjct:    1 MAWGAVLTQWYVTAATAYCILLLALGQELDEPYTDADEDRLKSFWDTRVEVDPCCDVILGEPLEITVWFRTDGNFTESAALYVDLPR 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8326.19686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTJ0_ECTSI4.800e-5395.40EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8326contigEcto-sp13_S_contig8326:4834..5751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size281
Hectar predicted targeting categorysignal peptide
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.9289382-CDS-Ecto-sp13_S_contig8326:4833..50271681464102.9289382-CDS-Ecto-sp13_S_contig8326:4833..5027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 4834..5027 -
1681464102.9394877-CDS-Ecto-sp13_S_contig8326:5664..57461681464102.9394877-CDS-Ecto-sp13_S_contig8326:5664..5746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 5665..5746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.950546-UTR-Ecto-sp13_S_contig8326:5746..57511681464102.950546-UTR-Ecto-sp13_S_contig8326:5746..5751Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8326 5747..5751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8326.19686.1prot_Ecto-sp13_S_contig8326.19686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8326 4834..5746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8326.19686.1

>prot_Ecto-sp13_S_contig8326.19686.1 ID=prot_Ecto-sp13_S_contig8326.19686.1|Name=mRNA_Ecto-sp13_S_contig8326.19686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MAWGAVLTQWYVAAATAYTILSLALGQELDEPYTDADEDRLKSFWDTRVE
VDPCCDVILGEPLEITVWFRTDGNFTESVALYVDLPRECIE*
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mRNA from alignment at Ecto-sp13_S_contig8326:4834..5751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8326.19686.1 ID=mRNA_Ecto-sp13_S_contig8326.19686.1|Name=mRNA_Ecto-sp13_S_contig8326.19686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:4834..5751- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAAATGGCCTGGGGCGCCGTGCTGACGCAGTGGTACGTCGCCGCTGCC
ACCGCCTACACTATACTGTCGCTGGCGCTTGGACAAGGTGAGCTGTTGTG
ATGTTCTTGAGACCGTAACGAAAGATCGCCTAAAGTTCAATATTACACAG
AAGATCGCAGCTGCTGTAGGGGGCAGAGAGAGAAAGGGAAAGGGAGTGAG
AGCGTGAAAGGGTTTTTGGTGCCATGGAAGATTGTTTTCTCGAATACATG
ATCCTTGGCGACATCGACGTCCGTCCTCCATGGTACATGGAAAGTAAGGT
GGGCTGCCCGGGCTGCAGCATTGACTGCTGTTCAACGAATCAGGCTTTAA
GACTAGGAGCTTGCAGACTAACCCTGTTGTCTACCATGTCGACGCCAGCT
TTATCTATCATGCTTTCAAGTCTGATCTTGATCGAAAAGACATCGTTTAC
CAACCATGCTCACACAGAAAAACCGTCTCGCGCGCACTATCACCGTAGTA
CGACACAGTAGCTTTCGCATACAGCAGTAGTGCTTGGGTAGGATTACACA
ACAATGAACCGAGTGGGCCAGTCGTCTATAGGAACCGGTACCCCTTCTTG
TCCATGGTATGCTGCCATTGTCCGACTTCGGTCTAGGCTATACAGCTCAC
TCAAAGCTCATCCACCTCTTGTTCACAAGCTGAACATACAAGGGTAACTG
CCGATCGATACGTATACTACACAGAACTAGACGAGCCCTACACCGACGCG
GATGAAGATCGACTCAAGTCATTTTGGGACACAAGGGTAGAGGTGGACCC
TTGCTGCGACGTCATCTTGGGGGAGCCGCTCGAAATCACCGTTTGGTTCA
GAACGGACGGCAATTTCACGGAATCAGTCGCTCTCTATGTCGACCTTCCC
CGTGAGTGCATCGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8326:4834..5751-

>mRNA_Ecto-sp13_S_contig8326.19686.1 ID=mRNA_Ecto-sp13_S_contig8326.19686.1|Name=mRNA_Ecto-sp13_S_contig8326.19686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:4834..5751- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTGGGGCGCCGTGCTGACGCAGTGGTACGTCGCCGCTGCCACCGC
CTACACTATACTGTCGCTGGCGCTTGGACAAGAACTAGACGAGCCCTACA
CCGACGCGGATGAAGATCGACTCAAGTCATTTTGGGACACAAGGGTAGAG
GTGGACCCTTGCTGCGACGTCATCTTGGGGGAGCCGCTCGAAATCACCGT
TTGGTTCAGAACGGACGGCAATTTCACGGAATCAGTCGCTCTCTATGTCG
ACCTTCCCCGTGAGTGCATCGAATGA
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