prot_Ecto-sp13_S_contig83188.19674.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig83188.19674.1
Unique Nameprot_Ecto-sp13_S_contig83188.19674.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length70
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.090e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR 69
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR 179
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.920e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS 68
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS 365
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A812IFC2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 4.650e-5
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 0 
Query:    2 YNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSE 61
            YNS +T C + +Q +  + LL  M +  L PDVV++SA ISAC  G    W +A+Q++ E
Sbjct:   13 YNSILTACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISACEHG---QWTMALQLVDE 69
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A813EGS6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EGS6_POLGL)

HSP 1 Score: 46.2 bits (108), Expect = 8.730e-5
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 0 
Query:    2 YNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSD--WRVAMQILSE 61
            +N+A+  CAR +    AV  L +ML +GL+P+ +T++A++ +C    G +  WR+A ++L  
Sbjct:   31 FNAALGACARGRCWNLAVARLGQMLQDGLTPNAITYTALLGSCRESNGRERQWRLAGELLGS 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKL0_ECTSI3.090e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE2.920e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812IFC2_9DINO4.650e-541.67Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813EGS6_POLGL8.730e-533.87Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..45
e-value: 2.7E-11
score: 43.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..34
e-value: 1.6E-6
score: 25.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 33..69
score: 8.144
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..32
score: 9.712
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..68
e-value: 2.6E-15
score: 58.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83188contigEcto-sp13_S_contig83188:12..221 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83188.19674.1mRNA_Ecto-sp13_S_contig83188.19674.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig83188 12..221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig83188.19674.1 ID=prot_Ecto-sp13_S_contig83188.19674.1|Name=mRNA_Ecto-sp13_S_contig83188.19674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGS
DWRVAMQILSEARGSGGSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf