mRNA_Ecto-sp13_S_contig83188.19674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83188.19674.1
Unique NamemRNA_Ecto-sp13_S_contig83188.19674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.090e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR 207
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGSR 179
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.920e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS 204
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSEARGSGGS 365
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A812IFC2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 4.650e-5
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    4 YNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSDWRVAMQILSE 183
            YNS +T C + +Q +  + LL  M +  L PDVV++SA ISAC  G    W +A+Q++ E
Sbjct:   13 YNSILTACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISACEHG---QWTMALQLVDE 69
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BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Match: A0A813EGS6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EGS6_POLGL)

HSP 1 Score: 46.2 bits (108), Expect = 8.730e-5
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    4 YNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGSD--WRVAMQILSE 183
            +N+A+  CAR +    AV  L +ML +GL+P+ +T++A++ +C    G +  WR+A ++L  
Sbjct:   31 FNAALGACARGRCWNLAVARLGQMLQDGLTPNAITYTALLGSCRESNGRERQWRLAGELLGS 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83188.19674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKL0_ECTSI3.090e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE2.920e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812IFC2_9DINO4.650e-541.67Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813EGS6_POLGL8.730e-533.87Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83188contigEcto-sp13_S_contig83188:12..221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7FKL0
Model size210
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.9855447-CDS-Ecto-sp13_S_contig83188:11..2211681464101.9855447-CDS-Ecto-sp13_S_contig83188:11..221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83188 12..221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83188.19674.1prot_Ecto-sp13_S_contig83188.19674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83188 12..221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83188.19674.1

>prot_Ecto-sp13_S_contig83188.19674.1 ID=prot_Ecto-sp13_S_contig83188.19674.1|Name=mRNA_Ecto-sp13_S_contig83188.19674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGGGS
DWRVAMQILSEARGSGGSR*
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mRNA from alignment at Ecto-sp13_S_contig83188:12..221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83188.19674.1 ID=mRNA_Ecto-sp13_S_contig83188.19674.1|Name=mRNA_Ecto-sp13_S_contig83188.19674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83188:12..221+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCGTCACCTTCTCGGCTGTGATCTCGGCGTGCTGCGGTGGCGGCGGCAGC
GACTGGAGGGTTGCGATGCAGATCCTTTCGGAGGCGCGGGGCAGCGGCGG
CAGCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83188:12..221+

>mRNA_Ecto-sp13_S_contig83188.19674.1 ID=mRNA_Ecto-sp13_S_contig83188.19674.1|Name=mRNA_Ecto-sp13_S_contig83188.19674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83188:12..221+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCGTCACCTTCTCGGCTGTGATCTCGGCGTGCTGCGGTGGCGGCGGCAGC
GACTGGAGGGTTGCGATGCAGATCCTTTCGGAGGCGCGGGGCAGCGGCGG
CAGCAGGTAA
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