mRNA_Ecto-sp13_S_contig8298.19647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8298.19647.1
Unique NamemRNA_Ecto-sp13_S_contig8298.19647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: D7G6D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D5_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 2.120e-76
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 1
Query:    1 SVALWMDLEEIFSLPFGVGEKMKDAADSIPRARQGDDLEYFLPPIARPKVKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMKTQ 360
            SVALWMDLEEIFSLPFGVGEKMKDAAD+IPRARQGD+ EYFLPPIARPKV  PARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGIS LLESRKQDPYRDGAKRWLYESVMKTQ
Sbjct:    2 SVALWMDLEEIFSLPFGVGEKMKDAADAIPRARQGDNQEYFLPPIARPKV--PARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISLLLESRKQDPYRDGAKRWLYESVMKTQ 119          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: B8BRN2_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRN2_THAPS)

HSP 1 Score: 99.8 bits (247), Expect = 7.480e-22
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 SVALWMDLEEIFSLPFGVGEKMKDAADSIPRARQG--DDLEYFLPPIARPKVKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYR-DGAKRWLYESVMKTQAPTFPLD 381
            SV + +D +E+  LPFG+G+ +K+   +   AR    D  E F+PP+A PK   PARHYF+FG A DTS +D +++  CQ  YE  ++ +R  I  LL +R++DP+  DG KR  Y+ +     PTFP++
Sbjct:  712 SVDIVLDAKELLDLPFGIGDNLKNFNANATSARYDTQDGEELFVPPLAVPK-PFPARHYFLFGRAFDTSSIDPQNKDACQTMYEEIENELRSDIDALLAARERDPFALDGGKRAWYQRLFGKDPPTFPVE 840          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 92.8 bits (229), Expect = 1.970e-19
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 SVALWMDLEEIFSLPFGVGEKMKDAADSIPRARQGD-----DLEYFLPPIARPKVKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMK-TQAPTFPLD 381
            S+ +  D +++ ++P  +G+ +K  A  +P+AR+G      + E F+ P+A PK+  P R YFVF   I TS  D KDR  C   Y  TK+ V EGI++LL+ RKQDPY +   R LYE+  +  QAPTFPL+
Sbjct:  589 SLNIIADSQQLEAMPV-LGDMVKRRAGGLPQARKGVAAASFEEESFVAPLATPKLP-PGRLYFVFQQPIQTSPEDLKDRQRCDDMYRATKASVEEGIAWLLQKRKQDPYGEFLPRQLYEAAYRGRQAPTFPLN 719          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A7S4J8V7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8V7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.370e-17
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   37 SLPFGVGEKMKDA-ADSIP-RARQGDDLEYFLPPIARPKVKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMKTQAPTFPL 378
            S+PFG+G  + D   D +P  AR     E    P+  PK  VPARH ++F   +    VD +DRG C+  Y   K  +R GI  LL + ++DPYRD A+R +YE V + QAPTFPL
Sbjct:  347 SVPFGLGNAVADLMGDDVPFDARWDRGGETISLPLVVPK-PVPARHGYLFHAPMRLDGVDHRDRGACREVYRRVKEEIRGGIRDLLRAAERDPYRDSARRLVYERVWRKQAPTFPL 461          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A7S0VIS5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VIS5_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 1
Query:   73 AADSIPRARQGDDLEYFLPPIARPKVKVP-ARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMKTQAPTF 372
            AA     +   D L +   PI  PK     +R YF+FG  I T  ++ KD   C   Y   +  V   +S+LL++R+ DPY++ + R LYE+     APTF
Sbjct:  689 AAGRSSESSSSDRLAFKDLPIVVPKPPWEVSRTYFMFGSPIRTQGINVKDAEECAGVYTKVQGEVNGILSYLLDNRENDPYKELSARLLYETQNARSAPTF 789          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: M2XSE0_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSE0_GALSU)

HSP 1 Score: 55.5 bits (132), Expect = 2.350e-6
Identity = 44/132 (33.33%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   16 MDLEEIFSLPFGVGEKMKDAADSIPRARQGD------------DLEYFLPPIARPKVKVPARHYFVFGPAIDTSLVDE--KDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMKTQAPT 369
            +D EE+  LP  VG  M ++  S+    +GD            DL  F+ P++ P+   P R YF F   ID+ L     K+R   +  Y   +  V  GI +LL+ RK+DP+    KR ++ESV    APT
Sbjct:  780 LDGEELIQLPL-VGRLM-ESLFSLSDMPKGDVVREWKGPLNKQDLVNFIQPLSIPRS--PHRIYFYFSSPIDSRLYTSAMKNRSQVEEMYGNIRDQVENGIRYLLDKRKEDPFEVWWKRIVFESVTGVAAPT 907          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A813DGN6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DGN6_POLGL)

HSP 1 Score: 55.1 bits (131), Expect = 3.190e-6
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  163 RHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESV 348
            R YF FG  +D   +D KD+  C   Y+  +  V   IS+LLE+R +DPYRD  +R ++E V
Sbjct:  635 RFYFSFGTPVDLKGLDPKDKDGCDKVYKSLQGDVEAEISWLLEARVRDPYRDFVRRQMWERV 696          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: UPI0018ADFF0D (acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADFF0D)

HSP 1 Score: 51.6 bits (122), Expect = 5.030e-5
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:  151 KVPARHYFVFGPAIDTS--LVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESV--MKTQAPTFPL 378
            K P R YF+FG  I+T     + +DR      Y   KS V+  IS+LLE R++DPYR+   R LY++     +  PTF L
Sbjct:  592 KFPGRVYFLFGKPIETRGREAELRDRKKAYQLYMHAKSEVKNCISYLLEKREKDPYRNLLPRLLYKATHGFTSVVPTFEL 671          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A2Z7C2A1_9LAMI (Acyltransferase-like protein chloroplastic-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C2A1_9LAMI)

HSP 1 Score: 51.6 bits (122), Expect = 5.050e-5
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  151 KVPARHYFVFGPAIDTSLVDE--KDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYESVMKT--QAPTF 372
            KVP R Y++FG  I T    +  KD+   +  Y   KS V   IS+LLE RK+DPYR    R +Y ++  +  QAP F
Sbjct:  616 KVPGRLYYLFGKPIHTKGKKDMLKDKERSRELYLHIKSIVEANISYLLEKRKEDPYRGIFDRTMYRALDASVDQAPAF 693          
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Match: A0A6I9TBP6_SESIN (acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TBP6_SESIN)

HSP 1 Score: 50.8 bits (120), Expect = 9.400e-5
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  151 KVPARHYFVFGPAIDTSLVDE--KDRGTCQAAYELTKSCVREGISFLLESRKQDPYRDGAKRWLYES--VMKTQAPTF 372
            K+P R Y++FG  I T   +E  KDR   +  Y   KS V   +S+LL+ RK+DPYR    R +Y +      Q P+F
Sbjct:  637 KIPGRLYYLFGKPIQTKGREEMLKDREEARKVYLQIKSGVETNMSYLLQKRKEDPYRGILDRTVYRAFHAPMDQVPSF 714          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8298.19647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G6D5_ECTSI2.120e-7695.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8BRN2_THAPS7.480e-2240.77AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
A0A2P6TRL1_CHLSO1.970e-1942.11Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]
A0A7S4J8V7_9STRA2.370e-1743.10Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0VIS5_9CRYP1.700e-634.65Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
M2XSE0_GALSU2.350e-633.33Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A813DGN6_POLGL3.190e-641.94Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
UPI0018ADFF0D5.030e-540.00acyltransferase-like protein At1g54570, chloroplas... [more]
A0A2Z7C2A1_9LAMI5.050e-541.03Acyltransferase-like protein chloroplastic-like n=... [more]
A0A6I9TBP6_SESIN9.400e-538.46acyltransferase-like protein At1g54570, chloroplas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8298contigEcto-sp13_S_contig8298:406..1477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.8
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog35128.Thaps20950
Model size381
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
Exons3
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,2XC8C@2836,COG0204@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001460.1
Cds size366
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.4299467-UTR-Ecto-sp13_S_contig8298:405..4201681464099.4299467-UTR-Ecto-sp13_S_contig8298:405..420Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8298 406..420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.4448617-CDS-Ecto-sp13_S_contig8298:420..5581681464099.4448617-CDS-Ecto-sp13_S_contig8298:420..558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8298 421..558 +
1681464099.455564-CDS-Ecto-sp13_S_contig8298:1078..12851681464099.455564-CDS-Ecto-sp13_S_contig8298:1078..1285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8298 1079..1285 +
1681464099.4668415-CDS-Ecto-sp13_S_contig8298:1456..14771681464099.4668415-CDS-Ecto-sp13_S_contig8298:1456..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8298 1457..1477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8298.19647.1prot_Ecto-sp13_S_contig8298.19647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8298 421..1477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8298.19647.1

>prot_Ecto-sp13_S_contig8298.19647.1 ID=prot_Ecto-sp13_S_contig8298.19647.1|Name=mRNA_Ecto-sp13_S_contig8298.19647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MDLEEIFSLPFGVGEKMKDAADSIPRARQGDDLEYFLPPIARPKVKVPAR
HYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISFLLESRKQDPYR
DGAKRWLYESVMKTQAPTFPLD
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mRNA from alignment at Ecto-sp13_S_contig8298:406..1477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8298.19647.1 ID=mRNA_Ecto-sp13_S_contig8298.19647.1|Name=mRNA_Ecto-sp13_S_contig8298.19647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8298:406..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGTGGCCCTTTGGATGGATCTGGAGGAAATATTCTCGCTGCCGTTCGG CGTGGGGGAAAAGATGAAAGATGCAGCTGATTCGATTCCCCGTGCGCGCC AAGGGGATGACCTGGAGTATTTCTTGCCACCAATAGCTCGCCCAAAGGTA AAGGTTCTGCTACTCGACCGACGACGTGAAGGGCATTGGCAGCGAAACTT CATCAACATTATCATGGGGTAATTTGCACTATTTCGCACACTGGCGGAGA TGATAACTTCATGCTCGGGAGGTGTACATTGTAGACTAGATGAATGCGCG TTATTTGCATGGCCATGCGGTCATGCGGCGGTTCAGATCAACTATTGCCT GTTTAATCCATATGTATACACGATGCAAGTTTTGCGAGGAGAAAGGCATC TCATTAAATGATATCCACCTGACCTGTGAGTGCCACGGAGTCCACCCCTT TCTCCGAGTTTTTCGAAGAAAACAAACACCACGCAATCGCAAGAACGAGA TTGCTTATCCTCGGAGGAACGAAACAATCGCTCCCCTGATGAAGACTGAT GGTGACGAGTTGTGAGAGAGGTGGCTCGAGAGCAGTCGTGATCATTTTTG GAAATGCAAAAATACGATAAGCGATGAAGGAGCCCCCCCGCCCCCGCCCT CGACTTGGCCTGTACGCGAAAAGGTTCCCGCACGACACTACTTTGTCTTC GGGCCAGCGATCGACACTTCTCTCGTGGACGAAAAGGATCGCGGAACATG TCAAGCGGCCTATGAGCTGACGAAGTCGTGTGTGCGCGAAGGGATAAGTT TTCTGCTTGAATCTCGAAAACAAGACCCGTACAGAGATGGCGCCAAGAGA TGGTTGTACGAGAGTGTCATGAAGACGCAGGTAATGCACATGATCGACTG TTGCTGCTTAGTCCTGTGCACAACACTTCCATGTATGAACTCAAATCGTG CTGCCAGGGGTTACTCTCTCGAAATGCGTCAGAATACAGTGAATGTCCTC CCACATCATCTCCGTTCACCGCTCCCCTTGTTTTCGTTCTTCGTCATGCA GGCACCTACTTTTCCCCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8298:406..1477+

>mRNA_Ecto-sp13_S_contig8298.19647.1 ID=mRNA_Ecto-sp13_S_contig8298.19647.1|Name=mRNA_Ecto-sp13_S_contig8298.19647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8298:406..1477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCTGGAGGAAATATTCTCGCTGCCGTTCGGCGTGGGGGAAAAGAT
GAAAGATGCAGCTGATTCGATTCCCCGTGCGCGCCAAGGGGATGACCTGG
AGTATTTCTTGCCACCAATAGCTCGCCCAAAGGTAAAGGTTCCCGCACGA
CACTACTTTGTCTTCGGGCCAGCGATCGACACTTCTCTCGTGGACGAAAA
GGATCGCGGAACATGTCAAGCGGCCTATGAGCTGACGAAGTCGTGTGTGC
GCGAAGGGATAAGTTTTCTGCTTGAATCTCGAAAACAAGACCCGTACAGA
GATGGCGCCAAGAGATGGTTGTACGAGAGTGTCATGAAGACGCAGGCACC
TACTTTTCCCCTCGAC
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