mRNA_Ecto-sp13_S_contig8292.19641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8292.19641.1
Unique NamemRNA_Ecto-sp13_S_contig8292.19641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 4.530e-162
Identity = 379/406 (93.35%), Postives = 383/406 (94.33%), Query Frame = 1
Query:    4 QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDER---PATAEPVAWEKDMVDKKAVSNMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVERALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXREALEAERQAAXXXXXXXXXXXXXXXDEERASRGLGPEE 1212
            QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEV+ESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEML RLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHD+RW+AHLESHKKASRVSRLKD R   P       W      KKAVSNMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKV+RALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXREALEAE    XXXXXXXXXXXXXXXDEERASRGLGPEE
Sbjct:  464 QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVMESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLVRLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDKRWKAHLESHKKASRVSRLKDRRLQPPNRRGRRTW----WTKKAVSNMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVQRALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXREALEAEXXXXXXXXXXXXXXXXXXXDEERASRGLGPEE 865          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A6H5KVX7_9PHAE (PCI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX7_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 1.700e-125
Identity = 250/337 (74.18%), Postives = 253/337 (75.07%), Query Frame = 1
Query:    4 QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----KLREKEKIQRIERELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVSNMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVER 1002
            QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKA CLRFGGEV+ESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEA      XXXXX                 XX        K            ELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELP+LRKKYEAQ                                       AWEKDMVDKKA+S MYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVER
Sbjct:  254 QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKAGCLRFGGEVMESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAERREQDXXXXXARRRGGVRQEEDLKRKAXXAARLARXXKXXXXXXXXXXXXELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPMLRKKYEAQ---------------------------------------AWEKDMVDKKAMSYMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVER 551          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A7S2BB15_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB15_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.040e-35
Identity = 126/301 (41.86%), Postives = 175/301 (58.14%), Query Frame = 1
Query:   28 LSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPA-----EQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVSNMYEDAEVFQSNIL 915
            LS  E+EK+IV AVK +QV+V VDH++ CLRFG  +LESD+MR QL+TLATQL K   +++P      E+T +  RA FFS V  +M REH  ALNRKNIIE+RK   XXXXX               XXXXXXXXXX       E+EK  +++ E+E      ML  +GK   NV+ L +  R+ ++ + K+S +K ++DE  +   +AKR+DYITRALR EE+P+++++Y+   +AD           +E+HK   R   LK +  A      WE D+  K  VS M      F+  I+
Sbjct:  127 LSDNEIEKMIVAAVKDKQVQVRVDHQSGCLRFGEAILESDNMRMQLTTLATQLHKVSEIIEPPNVLNPEKTAE--RAAFFSLVRDNMEREHHLALNRKNIIERRKXXXXXXXXEKLKHEERIRLEAEKXXXXXXXXXXKADAXXXEQEKFAKMKAEMERDNMVSMLKSIGKDVSNVDGLTEKDRDRILDEAKESAIKARDDEAQQALDKAKRIDYITRALRDEEIPMIQQQYQTIQSAD-----------VEAHK--LRCEELKKKHRAD-----WEADIAAKAKVSKMAGHRATFEDEIM 407          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.220e-32
Identity = 139/321 (43.30%), Postives = 191/321 (59.50%), Query Frame = 1
Query:   10 YLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNL----------------VKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVSNMYEDAEVFQSNILESR 924
            YL G+ + FQEVEKL+VRA K + ++V VD++ +CLRF   V+E++ MR+QL++LA QL   V L                VK A+      R  FF++V S +  EH+ AL RK +IEK     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                L +TK +L  LGKK +N+E +DK+ RE  I+  KD ++ EKE E+ R+K QAKR+DYI RA+R+EE PVL++K+ AQ  AD+ +H RR + +   H+                  + WE+ +  K A++ M      F++ +L+ R
Sbjct:  470 YLAGLEMDFQEVEKLVVRAAKSKDIQVAVDYQVQCLRFTPAVMETEGMRSQLTSLARQLNDVVTLIGGFDAKGITDAGAIIVKEADSAAA--RHSFFAKVSSHVETEHAAALRRKEVIEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAETKNVLKELGKKVENLETMDKAAREIAIKTAKDEILTEKEKEEKRMKDQAKRMDYIVRAMRMEEAPVLQQKFAAQQEADQADHARRVEEYRVKHR------------------LEWEESIKQKAALAKMQSYRSAFEAQVLQDR 770          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A7S0GDB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDB7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 6.660e-31
Identity = 125/334 (37.43%), Postives = 190/334 (56.89%), Query Frame = 1
Query:   19 GVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAEQTTQ-QQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNVE--KLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVS--NMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVERA 1005
            G+ ++F+EVE  IV A + +   VT+DH+A CLRFG E LES+SMR  L  L  +L    N++ P +   + ++R   F+ V  ++ +EH   L RKN IEKRKEE                 XXXXXXXXXXXXXXXXXX LR+K+K Q I++EL+L +  ++L  LG+ A+N+   +L +   E L ++  D V K+KE  + +LK  AKRLDYITRA+RIEELP+++ ++E +  AD+  +++  +  LE+ +                    W  D+  K+ +   +++    VF+  I+E R A H      A+  A    +++K+ERA
Sbjct:  166 GLGMAFEEVETGIVVATRAKLFSVTIDHQANCLRFGDEALESESMRDHLRILGRRLASVSNIIHPPDTNAKLERRVTLFNSVRQNLAKEHLAVLERKNEIEKRKEEVERLAQITLKKEIELKAXXXXXXXXXXXXXXXXXXXLRDKQKEQMIQQELDLMKKSKILEDLGRSAENMNAAELAEIDTEALAKQHADKVTKKKEAAERKLKEIAKRLDYITRAIRIEELPLIQTRFEERNRADRERYEKETEERLETMRGQ------------------WGSDVEKKQGLEKHDVFAHTSVFEDLIMEGRVAVHEEACAVADTLAEQVAEKEKIERA 481          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A8J9S3E1_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3E1_PHATR)

HSP 1 Score: 131 bits (330), Expect = 1.360e-29
Identity = 137/335 (40.90%), Postives = 201/335 (60.00%), Query Frame = 1
Query:   16 TGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAE-QTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNV--EKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVS--NMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVERA 1005
            +G+ LSF++VEK IV + K   V++  DH+A CLRFG   LESD+MR+QL  L+ QLQ   N++ P + Q+  Q R   +  V  ++  EH+  L RKN+IE RKEE       XXXXXXXXXXXXXXXXXXXXXXXXXXXX         +I++EL+ Q+ K  LA +GKK +++  E++ K   E L R+ +  + KE+E+ + + +  AK+LDY+ RA+RIEELP+++KKYE +   DK  ++   Q ++E  +KA                + WE D+ DK  +   N++     F+++++  RQAEH      AEE A    ++ K+ RA
Sbjct:  276 SGLDLSFEQVEKTIVTSSKTLAVRL--DHRAGCLRFGNVQLESDAMRSQLVNLSKQLQAVSNVLTPPDRQSVLQSRLSTYQSVRENLHAEHAAVLERKNLIETRKEETERVAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQQELDNQEKKRFLAAMGKKTEDISEEQIAKIDTEALQREHEAKINKEREEAERKTRETAKKLDYLVRAIRIEELPLIKKKYEEKTKLDKERYE---QENIEKAQKAK---------------LQWEADVKDKAVLESHNVFAYCSEFENSVMVGRQAEHDVICQRAEEEAEMEAEKAKISRA 590          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: B7G0T8_PHATC (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0T8_PHATC)

HSP 1 Score: 131 bits (330), Expect = 1.610e-29
Identity = 137/335 (40.90%), Postives = 201/335 (60.00%), Query Frame = 1
Query:   16 TGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAE-QTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNV--EKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVS--NMYEDAEVFQSNILESRQAEHAAEVIAAEERARAFQKQKKVERA 1005
            +G+ LSF++VEK IV + K   V++  DH+A CLRFG   LESD+MR+QL  L+ QLQ   N++ P + Q+  Q R   +  V  ++  EH+  L RKN+IE RKEE       XXXXXXXXXXXXXXXXXXXXXXXXXXXX         +I++EL+ Q+ K  LA +GKK +++  E++ K   E L R+ +  + KE+E+ + + +  AK+LDY+ RA+RIEELP+++KKYE +   DK  ++   Q ++E  +KA                + WE D+ DK  +   N++     F+++++  RQAEH      AEE A    ++ K+ RA
Sbjct:  511 SGLDLSFEQVEKTIVTSSKTLAVRL--DHRAGCLRFGNVQLESDAMRSQLVNLSKQLQAVSNVLTPPDRQSVLQSRLSTYQSVRENLHAEHAAVLERKNLIETRKEETERVAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQQELDNQEKKRFLAAMGKKTEDISEEQIAKIDTEALQREHEAKINKEREEAERKTRETAKKLDYLVRAIRIEELPLIKKKYEEKTKLDKERYE---QENIEKAQKAK---------------LQWEADVKDKAVLESHNVFAYCSEFENSVMVGRQAEHDVICQRAEEEAEMEAEKAKISRA 825          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A7S4K9L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9L6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.070e-22
Identity = 108/276 (39.13%), Postives = 161/276 (58.33%), Query Frame = 1
Query:    1 VQTYLTGVRLSFQEVEKLIVRAVKQRQ-------VKVTVDHKARCLRFG----GE----------------VLESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQ-QRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNV----EKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADK 732
            V++   G+ + F  VE+ IV   +          ++V +DH+A CLRFG    GE                 LESD+MR QL  L+T L K  ++V PA+ T  + ++A  F  V S +  EH   L RK +IE+RKEEA               XXXXXXXXXXXXXXXXXX ++RE+EK+Q+I++EL++Q+ K +L  +GK+ ++     E+L+    ++L R+      K+KE+ + ++K  +KRLDYI RA RIEELP++RK+YE +V  ++
Sbjct:  555 VKSLTEGLGVPFVRVERAIVGCARDDDLSRSSATIRVRIDHRANCLRFGEYSAGEEGDDGQDGSGSGSRVGALESDAMRKQLLLLSTGLAKVSSIVDPADDTQYKAEKAQLFMVVRSKLSSEHEAMLARKELIERRKEEAERLAQEKIKEAARIKXXXXXXXXXXXXXXXXXXQRVREREKLQKIQKELDIQEKKRLLKAMGKEKESEVMTEEQLELVDTQKLAREHAAKANKKKEEAERKVKELSKRLDYIVRATRIEELPLVRKRYEEKVKRER 830          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: B8C1C2_THAPS (Eukaryotic translation initiation factor 3, subunit 10 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1C2_THAPS)

HSP 1 Score: 108 bits (271), Expect = 6.360e-22
Identity = 121/325 (37.23%), Postives = 183/325 (56.31%), Query Frame = 1
Query:    1 VQTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAEQT-TQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIER--------ELELQQTKEMLARLGKKADN--VEKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVS--NMYEDAEVFQSNILESRQAEH 936
            V+   TG+ +SF+++EK IV + + R + V +DH+A C+RFG   LES+ MR QLSTLA +L  A N++ P +      +RA  ++ V S +  EH   L RK +IEKRKEEA       XXXXXXXXXXXXXXXXXXXXXXXXXXX      KIQ+I+         E++  + K  L  +G+  +N  V++L +     L ++  +   K+K          A++LDY+ RA+RIEELP ++ +YE ++  DK  ++         H+   +  R KD+         WE D+ +K A+   ++++    F+S I+ +R+  H
Sbjct:  475 VKNLTTGLGVSFEQIEKSIVLSTQSRVLSVRIDHRAGCIRFGNAALESNEMRGQLSTLAKRLTTACNIISPPDVAPVVSERAALYAHVRSTLESEHIATLERKIVIEKRKEEAERIVQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQKIQDGECDLDGGEMDAMEKKRYLTAMGRNVENMTVDQLKEVDTAALAKEHAEKANKKKXXXXXXXXXXARQLDYLVRAVRIEELPQIKSEYEKKIKEDKENYE---------HEVIEKAKRAKDQ---------WETDVKEKAALQECSVFDYTSEFESMIMSARKIVH 781          
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Match: A0A1Z5KQK7_FISSO (Eukaryotic translation initiation factor 3 subunit A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQK7_FISSO)

HSP 1 Score: 108 bits (271), Expect = 6.550e-22
Identity = 101/328 (30.79%), Postives = 177/328 (53.96%), Query Frame = 1
Query:    4 QTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDSMRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALNRKNIIEKRKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLREKEKIQRIERELELQQTKEMLARLGKKADNV--EKLDKSGREELIRKTKDSVVKEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRRWQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVS--NMYEDAEVFQSNILESRQAEHAAEVIAAEERARA 975
            Q   TG  ++F ++EK +V+  + + + V +DH+A CLRFG     + S  T L     Q+ K+++   P ++ ++ QR      +   +  +H+  L RK +IEKRKE+A                   XXXXXXXX       +LRE EK ++I++EL+ Q+ K  L  +GK  + +  E++ +   E L R+ ++ + K+KE+ + + K  AK+LDY+ RA+RIEELP++RKKYE     +K+ HDR    + + +++  ++++ +           WE+D+  KKA+   +++   + F+  ++  R+AEH+     AE  A A
Sbjct:  525 QRLTTG--MTFHQIEKSLVQFTQTKAITVRIDHRAGCLRFGATTDWNSSQLTVLGKSLEQVAKSIHPPAPTDRLSEYQR------IRESLDDDHTGLLKRKELIEKRKEQAERDVQEKLRLAAQRKAEEDXXXXXXXXKRIAREQRLRELEKXRKIQQELDNQEKKRFLTAMGKDTEAMTDEQISQIDTEALQREHQEKLNKKKEEAERKTKEVAKKLDYLVRAIRIEELPLIRKKYE-----EKVNHDR--DLYEKENEEKVKIAKKR-----------WEEDVEAKKALEAHSVFSYCQKFEDMVMTWREAEHSVLCAEAERNAEA 826          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8292.19641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL6_ECTSI4.530e-16293.35Eukaryotic translation initiation factor 3 subunit... [more]
A0A6H5KVX7_9PHAE1.700e-12574.18PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2BB15_9STRA1.040e-3541.86Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A836CG33_9STRA1.220e-3243.30Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S0GDB7_9STRA6.660e-3137.43Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A8J9S3E1_PHATR1.360e-2940.90Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
B7G0T8_PHATC1.610e-2940.90Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4K9L6_9STRA2.070e-2239.13Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B8C1C2_THAPS6.360e-2237.23Eukaryotic translation initiation factor 3, subuni... [more]
A0A1Z5KQK7_FISSO6.550e-2230.79Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8292contigEcto-sp13_S_contig8292:259..6955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score505.8
Seed ortholog evalue1.9e-140
Seed eggNOG ortholog2880.D7FZL6
Preferred nameTIF32
Model size1212
KEGG koko:K03254
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000131,GO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070887,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons11
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2072@1,KOG2072@2759
Ec32 ortholog descriptionEukaryotic translation initiation factor 3 subunit a (subunit 10)
Ec32 orthologEc-25_003560.1
Cds size1212
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8292.19641.1prot_Ecto-sp13_S_contig8292.19641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8292 259..6955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464098.8447864-CDS-Ecto-sp13_S_contig8292:258..3631681464098.8447864-CDS-Ecto-sp13_S_contig8292:258..363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 259..363 +
1681464098.857793-CDS-Ecto-sp13_S_contig8292:1255..14111681464098.857793-CDS-Ecto-sp13_S_contig8292:1255..1411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 1256..1411 +
1681464098.8674266-CDS-Ecto-sp13_S_contig8292:1746..18591681464098.8674266-CDS-Ecto-sp13_S_contig8292:1746..1859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 1747..1859 +
1681464098.8767924-CDS-Ecto-sp13_S_contig8292:2453..25471681464098.8767924-CDS-Ecto-sp13_S_contig8292:2453..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 2454..2547 +
1681464098.8884797-CDS-Ecto-sp13_S_contig8292:3031..31301681464098.8884797-CDS-Ecto-sp13_S_contig8292:3031..3130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 3032..3130 +
1681464098.8976488-CDS-Ecto-sp13_S_contig8292:3446..35961681464098.8976488-CDS-Ecto-sp13_S_contig8292:3446..3596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 3447..3596 +
1681464098.9061913-CDS-Ecto-sp13_S_contig8292:4070..41871681464098.9061913-CDS-Ecto-sp13_S_contig8292:4070..4187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 4071..4187 +
1681464098.9146075-CDS-Ecto-sp13_S_contig8292:4757..49161681464098.9146075-CDS-Ecto-sp13_S_contig8292:4757..4916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 4758..4916 +
1681464098.92245-CDS-Ecto-sp13_S_contig8292:5239..53431681464098.92245-CDS-Ecto-sp13_S_contig8292:5239..5343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 5240..5343 +
1681464098.9310975-CDS-Ecto-sp13_S_contig8292:6109..61911681464098.9310975-CDS-Ecto-sp13_S_contig8292:6109..6191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 6110..6191 +
1681464098.9402435-CDS-Ecto-sp13_S_contig8292:6922..69551681464098.9402435-CDS-Ecto-sp13_S_contig8292:6922..6955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8292 6923..6955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8292.19641.1

>prot_Ecto-sp13_S_contig8292.19641.1 ID=prot_Ecto-sp13_S_contig8292.19641.1|Name=mRNA_Ecto-sp13_S_contig8292.19641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
VQTYLTGVRLSFQEVEKLIVRAVKQRQVKVTVDHKARCLRFGGEVLESDS
MRTQLSTLATQLQKAVNLVKPAEQTTQQQRAGFFSQVVSDMPREHSDALN
RKNIIEKRKEEAERREQDKTREEARVRQEEDLKRKAEEAARLAREAKLRE
KEKIQRIERELELQQTKEMLARLGKKADNVEKLDKSGREELIRKTKDSVV
KEKEDEDARLKSQAKRLDYITRALRIEELPVLRKKYEAQVAADKLEHDRR
WQAHLESHKKASRVSRLKDERPATAEPVAWEKDMVDKKAVSNMYEDAEVF
QSNILESRQAEHAAEVIAAEERARAFQKQKKVERALSRMRKAEEEAERAR
EEEERQEREAEEASRREALEAERQAAQEKAEATRAAEKQARDEERASRGL
GPEE
back to top

mRNA from alignment at Ecto-sp13_S_contig8292:259..6955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8292.19641.1 ID=mRNA_Ecto-sp13_S_contig8292.19641.1|Name=mRNA_Ecto-sp13_S_contig8292.19641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8292:259..6955+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGACGTACTTGACAGGCGTCCGTCTTTCGTTCCAAGAGGTGGAGAA GCTCATCGTAAGGGCGGTAAAGCAGAGGCAGGTCAAGGTCACAGTGGACC ACAAGGTGCGATAAGACACCACAAGATAACTTTAATCCCTGTGCCCTTTC GTGTCGACAAGGTCAGATTGAGATTTTATCCTTTGTGCCCTTTCCCGTCA GAACAAGGTGAGATTAACTTGTATCCTTTCGCCCTTTCCCGTGTGCTGTT GTGAAGTTTGTCTTGAGACCAGCTGTTTGACGTGGTAAAAAAAAGTGCCG AAAAATGCGAGATGATGCGTGCGTTGTGGCTTTTCTGTTAATCTTTTTAG CCTCTTGTTTTATTCTCTGAAGCTCTGACAGGCTCCTGCGGTCGTGGTGT ATGCCGTATTCTCTCAACCCTCGTGATCATGTCGTCTAGATCAAGAATTG AGAACTAGGTTCCACCCACCTCAACACTTTCTCTCCCCTTAAGCCCACCT TTGTCCAGATCCAAACATTCACACGCCTTTGTTGAGACCAAATGTTCACA ACGACTGTCGGCAGGAAATGTGGTAAAGATTCCCGTTAACCACCCGCACC TGCTCTCTCTCCTCAACGCAAGACATAGAATCTAACCAACTTTTGTTCAG ACAAAACATTCACACGTCTTTGTTGAGACCAAACTTTCACAACGACTTTT GACGGGAAATATGTCAACCACCCTGACCTCTCTTCGGTGCACCTTTTGCT CTGACTTGAGATAAAGATAAAGATTCACAAGGATTGCCGTCAACCTCTTT CACTTTTCTCCCTCCCGTTCACCATCCTCGAGGCCAAACTTTCAACAGGA TTACCGTAGGTCTGTGTTTATGTCCACCCTAGGCCTATCCTCAACTGCAA CAATGCTGTTTCCTAACCGCGTCCCGTTCCGTCTCTGTTTCTGTCCATTG GTGCTCCATGATACGATCAATACCGTCATTGACCATGGCGAGAGCAGGCT CGTTGCTTAAGGTTCGGCGGAGAGGTGTTGGAGAGCGACTCCATGCGCAC CCAGCTCAGCACGTTGGCGACCCAGCTGCAGAAGGCTGTCAACCTTGTCA AGCCCGCGGAGCAGACGACCCAGCAGCAGAGGGCCGGCTTCTTCAGTCAA GTGGTGAGTCACAAGGTCTGGTCAGGGTTAAGGAGACAAAGGGAGTCTTT TGTTGGTGCGATTGGAGTGTAGCGAGAGTCAGGCTTACGGAGACAAAAGA AAGGTTGATGTCGGTGCGAGTTGATTTACGGAGATGAAGGAGTTTTGTTT GATTTGGTTCGAGTCGGGTCGAAGGGTTTTTCAGCCACGCCGTGTGTCTG ATCAGAGTCGGTTAGGAATTCGTGTCTCTCCGGAACACAGTTTTCCGCGA AATATCTCCCGTTCCGGCCCCGCACCTCGCACACGGTACTTCCCGGTTTC CACGGAATTCGTTGGTCAATATTGGTATGGAATGGTAGGTGAGCGACATG CCCCGGGAGCACAGTGACGCGTTGAACCGCAAGAACATCATCGAGAAGCG CAAGGAGGAGGCCGAGCGTCGCGAGCAGGACAAGACCAGGGAAGAGGCCA GGTGATTTCTTTTGCGTTTTCTCTTGTTATTTTTAGTACTTGTACGAGAC GTGGTGCTGTTTTTGTTTTTTTCTTGGTCTGGTTTCCAGTTCTTGATGGC ATCTTATCCATATGGACAAGACCATAAACGAGGCGAGGTGGCCAGTTTGG TATTTTTCTACCACAAGGTCTGGGTCGCCAAGCATCGATTGTATGCGCAT GGCATGGTGCGGGTGTTTTCCGTTCTTTGGTATTGTTGTATCACATCGAG AACAAATGCCCTTCTTCTAAGCTAACATCTATACCGATGGTGTTTGACAA TCGCTCAAGCCGCGTGTAAATCTTTTTGTTTGAAGTGGGAACGTGGTTGG TGGTAGACGACGGGGCGCGTAAGCTGGGCAAGGAGGATGATCGGTTTCGA GTATTCTTTGGCACGCATCAGTGCAATGGCTTGCGTCTATACAACCACCA ACATAACAAACATGCAGCAACAACAACCGTCAGCCACGGACCTCAACGAG CAACAATGTAACACTCATTATTATTTAGCAATAACAAGACCAACAACTTA GGACAAGAACGACGACTATTTGATGACATTTGATGACTATGACAGGGTCC GTCAAGAAGAGGACTTGAAGCGGAAGGCGGAGGAGGCTGCTCGCCTGGCC CGGGAGGCCAAGCTTCGCGAGAAGGAGAAGATCCAACGGGTACGAATCAC CCACACAGATCTCCATCTCTTTTCGGCTTAAGTTGTACATCCATGTAGAT GTGATATTGTGAGATTCGAGAAAATACATCATACGAGTCATCCCATCACA GGTTTGACGATAGTCTGCGCCCCCCCCCAACCCCCCTTTTCCTCGTCATG CCCCGAGTACTCCCTTTTCACACGCACAATTTGCCATTCCATACAATCCG GCGCCATCCTATACATACAGGCGCTGATGTTGCGATGGCGGTATCCCATC GTCGATGCCTTCCAACCCGTCTCACCCCTAGTTCTTTGGGTCGGTTGGGT GTGCTCGTGTGTTTTCTCAAGGCGGATTTAGCGTTTTGAGGTTAAAGATG AGGAGTGTCCTTCGTGGTTGCGTATCAGCAAGATTTTGCCAAAAAGTGAT TGGAGCCTAGCCTATCCTAGCCTACAGTCTCTGACACCCCTTTTTTTTTT CTGTTGAATGTCCGCAAAATCAGATCGAGCGCGAGCTGGAGCTGCAGCAA ACGAAGGAGATGCTCGCAAGGCTCGGCAAGAAGGCGGATAACGTCGAGAA GCTCGACAAGTCTGGCAGAGAGGTGCGTTTTGATATTGCGTATTCAGGTT CTTTTAGAGCACCGACGGGGAAATTTTGCCGGCCGGTATGGCGAGCTCTA TCGTTTATTCGAATCCACGACTTGTAAGAATGGTCATAAACGTATCGCTG AGAGGTATTGGCATCATTGTTTTCGTGACAGCGCTAGGCCGACCCCTTTT ACCCAACCCTAACCCTTTTGCCGTATCGCTATCCCAAAAGCTTTCTTGTG TCATGCGTTCTTGGTTCCTCATTTTTCGGGATGTATCGCTAACAACCCCA TCCCCACACATGTAATCCTAACGCTATCCCTTACGCAGGAGCTTATCCGG AAGACGAAGGACTCTGTGGTGAAGGAGAAGGAGGACGAGGACGCTCGCCT CAAGTCTCAGGCCAAGCGCCTCGACTACATCACGAGGGCCCTCCGTATCG AGGAGCTGCCGGTGCTCCGCAAGAAGTACGAGGCGCAGGTGCGGAGATGT CGGAGATGTCGCTTGCTTGTCGAGCGATAGAAACGCCCGGCTGACTTGCT CATCACGCGTGAGAGAGACATGCAGACGTGTTATCGTCTACCTGAGATGT TTGTCGATGTCGGAGATGTCATGAGAGAGAGAGATCCAGACGGGTTGTCT ACCTGAGATGTTTCTCTGTGGCGGAGATGTCGGAGATCTTGCGTATCCAA CCATTGAAAGGCCCGGCTTGCGTTGCTCGCTCGTGCGAGATGGACATCAT TGCCGGTGCGATGTCAGGGCTGTGATGTCTTCATGTACGTATGATCCCCT GGACTCGCCTCGTATCCCACAGCCGAACCATTGCCCCCCACCGAAGAAAA TATCTGATGTGGGTGTCAGAAGGTGACAGCCGACAAGATGAACCAATTAC CTCGACACCCTGAATCGTAACCGTTGCCCCAAACCCTCATGTGCTTGTGC ATGTGTCGTTAGGTCGCTGCCGACAAGCTGGAGCACGACAGGCGCTGGCA GGCACACTTGGAGAGCCACAAGAAGGCGAGTCGAGTCAGTCGTTTGAAGG ATGAGCGTCCTGCAACCGCCGAACCGGTTGTGACGTAACACTACGCCTCT TTGCATTTTGCTGCGTGAACGCTGCTTAGTTGCTGCTCCTGTCCCTGCTG AGACACTTGTGTTGCGAGTCAGTCGTTCGAAGGACGGCTATCTACAACCG CCGAAACGGTTGTGACTTGCCACAGTCTTGTAATTTGCGCTGTTTTTGCT GCTCGGGTGCTGCTCCGTTTCCCTGCTTTAGTTTTATGAAAAATCTAGGT GTCTCAGCTTAGGCTCGCTATCGATCAAAATGCCTCACACACCCTTGTGT CCTAGCATGCCGCTATTTGTGTCTCTGGCATGTTTGTTGTATGAATAAGA GCTGGTGGAGAAGTTGTCCTCGTCATCGTTCGTGTTTGTACCGCCTTGTG TTGGGGGTAGCTTTCGATCGCAGGAAACCGTTTCTGTTTCCTGAACAAAG CGCACATTTCTGCGGGATACGAAGCCCACTTCTAACAGCGTGTACTCTCG TGGCAACACTTACTCCCTCCCCCGTTGGTCAATGGTCTAACCGCGAAGGC ATGCAAAACATAAGAGTACGCCCCCACCCGCCCACCCCTGTCCGGCCAGG CGTGGGAGAAGGACATGGTGGACAAGAAGGCGGTGTCGAACATGTACGAA GACGCCGAAGTTTTCCAGTCCAACATCCTCGAATCGAGGCAGGCCGAGCA CGCTGCAGAGGTCATCGCGGCCGAAGAACGCGCTAGGGCCTTCCAGAAGC AGAAGAAGGTGATATTTGTTTTGTTGATGACCACACCATGCAGTTGGGTT GGTGATCGTACAGTGTTCGTTTTCTTGTGAAGCGAAAGAACGTGACGGTG ACGCATCACTCGGTTGGGGTGAAGGTGGAAGATTCGGGTCAGATGTGCGA TCAGCAACTTAGTCCTGCCTCCACGGTGTTGAGGTGGCTACACAGACATT GTCGGCCAAAGCCGACGTTGCCTGTCACCTTCATCTGCTACCTAATTTGT TCTCGTGTTCCTCCTGCTGTGGTGCTCATTTCGTCCTCTCCCTTGGCCTT TGCACTGCTTCCCCACACCCTACTGCTGCAGGTCGAGCGTGCTCTTTCTC GCATGCGCAAGGCCGAGGAGGAGGCAGAGCGTGCCAGGGAGGAGGAGGAG CGCCAAGAGCGCGAAGCGGAAGAAGCCTCTCGCAGGTGCAGTAGTACACT TACTGTATACTTCTCATGCGCTCGTGCCGCTATGCACGAGACAGCCGACG CCAGACGCGTACGTACTCACGTACGTATCACAATGCAGCAGTTCAACCGG TGCATCCAGAAAACTTTGGCGCGGGACAAAACGCTCAAGTTTTTTTTTTT CCGAAGTACTGCGTTTTTCGTCGATGTGGTTGAGGGTAGAGTCGGAGGGT GAATTTTGTCGACGCCTGTGTGCAGGAGAAGTGCACTGCACCACGCTACA GTAGTTGTCCCGGTGTAATGCCCGTGCGATCCGGCCGAATTCGCCGGCAA TTAGCGGGCAAACGGCATTTCACAGGGCGACCGGCGTTATACCAGGACCA CTGCTGTATGCCATGTCCTCGTGTCGCTGTTCTATTCCGCTTTTCCATGC GGCCGCTATGCACGAGACGCGAGACACGTACGTATTTATCACAGCACAAT GCTTTTCAACGGGTGCAACCAGAAAACTCACGGTATGCACGAGACATGAA ACGCAGGCATATCAAGTACTCCAGTTCACTCGGTGCCATCAAAGAAACAC TTGGCGCGGGACCATTCGCTTGATATGTTTTTAAGCGACCTTCTGCATTC ATTTATGCACACTTCTGATTGGATTGGACTTTGGGTGGAAGGAAGGATTA TACCGACGCTTTCGTCCAAGGAGAAGTTGGCGCTCGGCACCCGTTCTTGA CCTTGCGTTTTTGTCTTCGCATCGTGTGGTTGTCTCGCTTTGACGTGACA GGGAAGCTCTGGAGGCTGAACGTCAGGCCGCTCAAGAGAAGGCCGAGGCT ACTAGGGCGGCCGAGAAGCAAGCGCGCGATGAGGTGACACGAAAGTACTA AGATTGTTGCTACATGATTGTAAGCTTCGTCTAAAAATGAGGAGTGTATT TTCGCCGTTGTCTTAGTGGGCGCAACACACACGTGTGCAAGTTACTTGCT AATTTCTTTCTAGTTTCGTGGTGTCTGTTGTGTTCCTAACAACGGTTTAT TTGTTGTGTTTTTGGCATTTGCAGATAACGTGATGTAATACGGATTTTGT TGTGTTGGGACGGCATATGCGGATAACGAGTTTGCTGGTTTAGATAGCGG TTGGAGCTAGGTTTTGTGCAGTGAGAGGTTGTTTCTGTAGTCTTGCGTTT TCGTTTTGGAAGCACTGTTGTACACTTCGAAAGTACAAGTTATAGCAGAT GACGTTCTTCATACCACGCTCATGTACAGAGGCAAAATGGGGCGGGACAA CAAACCACGGCATCAAGCATGTATCGAGAACATGCCCGGGCTATGATACG CACTCACCCCTTACCCCTGTGCTGCGAGAACTGTCTTGACCACTGGCTGC ACCACAGGAAGATACCTCTGTGCGATCTCCCAATGCGATTCGGCCGTCGG GTTAATCTGTTGTCGTAGCTCATCAACCGGCCAGGGCTTTCTCCCTATCT GTGCTCGCCGCTAGCTTCATGGTAGGAAGCTGCGTCCTCTCGTGTCACCG ACATCTTCGGTGCCACAGCTAACCTAGCCAAAACCTCGCACCCGCCTTCT GATTGGTTGAGCAGGAGCGTGCCTCCCGCGGACTCGGCCCCGAGGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8292:259..6955+

>mRNA_Ecto-sp13_S_contig8292.19641.1 ID=mRNA_Ecto-sp13_S_contig8292.19641.1|Name=mRNA_Ecto-sp13_S_contig8292.19641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8292:259..6955+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGACGTACTTGACAGGCGTCCGTCTTTCGTTCCAAGAGGTGGAGAA
GCTCATCGTAAGGGCGGTAAAGCAGAGGCAGGTCAAGGTCACAGTGGACC
ACAAGGCTCGTTGCTTAAGGTTCGGCGGAGAGGTGTTGGAGAGCGACTCC
ATGCGCACCCAGCTCAGCACGTTGGCGACCCAGCTGCAGAAGGCTGTCAA
CCTTGTCAAGCCCGCGGAGCAGACGACCCAGCAGCAGAGGGCCGGCTTCT
TCAGTCAAGTGGTGAGCGACATGCCCCGGGAGCACAGTGACGCGTTGAAC
CGCAAGAACATCATCGAGAAGCGCAAGGAGGAGGCCGAGCGTCGCGAGCA
GGACAAGACCAGGGAAGAGGCCAGGGTCCGTCAAGAAGAGGACTTGAAGC
GGAAGGCGGAGGAGGCTGCTCGCCTGGCCCGGGAGGCCAAGCTTCGCGAG
AAGGAGAAGATCCAACGGATCGAGCGCGAGCTGGAGCTGCAGCAAACGAA
GGAGATGCTCGCAAGGCTCGGCAAGAAGGCGGATAACGTCGAGAAGCTCG
ACAAGTCTGGCAGAGAGGAGCTTATCCGGAAGACGAAGGACTCTGTGGTG
AAGGAGAAGGAGGACGAGGACGCTCGCCTCAAGTCTCAGGCCAAGCGCCT
CGACTACATCACGAGGGCCCTCCGTATCGAGGAGCTGCCGGTGCTCCGCA
AGAAGTACGAGGCGCAGGTCGCTGCCGACAAGCTGGAGCACGACAGGCGC
TGGCAGGCACACTTGGAGAGCCACAAGAAGGCGAGTCGAGTCAGTCGTTT
GAAGGATGAGCGTCCTGCAACCGCCGAACCGGTTGCGTGGGAGAAGGACA
TGGTGGACAAGAAGGCGGTGTCGAACATGTACGAAGACGCCGAAGTTTTC
CAGTCCAACATCCTCGAATCGAGGCAGGCCGAGCACGCTGCAGAGGTCAT
CGCGGCCGAAGAACGCGCTAGGGCCTTCCAGAAGCAGAAGAAGGTCGAGC
GTGCTCTTTCTCGCATGCGCAAGGCCGAGGAGGAGGCAGAGCGTGCCAGG
GAGGAGGAGGAGCGCCAAGAGCGCGAAGCGGAAGAAGCCTCTCGCAGGGA
AGCTCTGGAGGCTGAACGTCAGGCCGCTCAAGAGAAGGCCGAGGCTACTA
GGGCGGCCGAGAAGCAAGCGCGCGATGAGGAGCGTGCCTCCCGCGGACTC
GGCCCCGAGGAA
back to top