mRNA_Ecto-sp13_S_contig8281.19626.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8281.19626.1
Unique Name	mRNA_Ecto-sp13_S_contig8281.19626.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.680e-26
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKARNQLEY 341
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA   LEY
Sbjct:  445 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLEY 523

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.910e-26
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKARNQLEYDPPPDRQHAIRATAFP 389
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA       PP    H    T FP
Sbjct:  372 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPP----HPPHRTFFP 462

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.290e-25
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKARNQLEYDP 347
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAI DRSC N APSSR RV NDLTAKA    EY P
Sbjct:  243 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIRDRSCGNNAPSSRARVVNDLTAKACKTEEYVP 323

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.200e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAK 320
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAK
Sbjct:  188 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAK 259

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.690e-25
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKA 323
            AW+ +E+ +AVLGHR+ V KAG       I R+DRLGKTFLSHLWQ RK+RLA GDRSC N APSSRGRV N LTAKA
Sbjct:   95 AWNREERTVAVLGHRRWVEKAGRG-----IVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKA 167

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.230e-25
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKARNQLEY 341
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA    EY
Sbjct:  622 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTPEY 700

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5KSI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.180e-25
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKA 323
            AW+ +E+ +AVLGHR+ V KAG D     IGR DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  720 AWNREERTVAVLGHRRWVEKAGRD-----IGRTDRLGKTFLSHLWQYRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 792

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5JKC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.120e-24
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKA 323
            AWD++E  +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APS RGR  N LTAKA
Sbjct:  238 AWDTKESTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSYRGRAVNGLTAKA 310

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BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.240e-24
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKA 323
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  423 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 495

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.120e-24
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 3

Query:   90 AWDSQEKALAVLGHRKGVAKAGSDKGRSEIGRMDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKA 323
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKTFLSHLWQ RK+RLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  708 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 780

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8281.19626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JD24_9PHAE	3.680e-26	69.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LRL5_9PHAE	6.910e-26	61.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L729_9PHAE	1.290e-25	66.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCQ0_9PHAE	2.200e-25	70.13	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJX4_9PHAE	2.690e-25	67.95	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE77_9PHAE	3.230e-25	67.86	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KSI5_9PHAE	6.180e-25	71.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKC1_9PHAE	1.120e-24	69.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVX2_9PHAE	1.240e-24	70.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4L1_9PHAE	2.120e-24	70.51	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8281	contig	Ecto-sp13_S_contig8281:6192..6709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	519
Hectar predicted targeting category	other localisation
Exons	1
Cds size	333

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464097.1799924-UTR-Ecto-sp13_S_contig8281:6191..6376	1681464097.1799924-UTR-Ecto-sp13_S_contig8281:6191..6376	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8281 6192..6376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464097.1898358-CDS-Ecto-sp13_S_contig8281:6376..6709	1681464097.1898358-CDS-Ecto-sp13_S_contig8281:6376..6709	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8281 6377..6709 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8281.19626.1	prot_Ecto-sp13_S_contig8281.19626.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8281 6377..6709 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8281:6192..6709+
coding sequence from alignment at Ecto-sp13_S_contig8281:6192..6709+

protein sequence of mRNA_Ecto-sp13_S_contig8281.19626.1

>prot_Ecto-sp13_S_contig8281.19626.1 ID=prot_Ecto-sp13_S_contig8281.19626.1|Name=mRNA_Ecto-sp13_S_contig8281.19626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MDRLGKTFLSHLWQGRKDRLAIGDRSCRNRAPSSRGRVANDLTAKARNQL
EYDPPPDRQHAIRATAFPDGARKRMSSCYNLSAYNSLCHVGIHRTSVGIH
CISRQSGVVRH

mRNA from alignment at Ecto-sp13_S_contig8281:6192..6709+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8281.19626.1 ID=mRNA_Ecto-sp13_S_contig8281.19626.1|Name=mRNA_Ecto-sp13_S_contig8281.19626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8281:6192..6709+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCGGAACATCGGTGGTACAAGAAGGAGAGTGAAGTGTACATGACTGA
GCTGGGAAAAGTAGGAGAAAGGTGCACGGAGATGTTTGGGCATGGGATAG
CCAGGAGAAGGCGTTGGCAGTACTGGGGCATAGGAAGGGCGTTGCAAAGG
CGGGAAGTGATAAAGGTAGAAGTGAAATCGGTAGGATGGATAGATTAGGG
AAGACATTCTTGAGCCACCTTTGGCAAGGTAGGAAGGATCGATTGGCCAT
CGGTGACCGGTCTTGTCGTAACAGGGCTCCGTCCTCTCGAGGACGCGTTG
CCAATGACCTAACCGCTAAGGCACGGAACCAATTAGAGTACGACCCCCCC
CCCGACAGACAGCACGCCATACGTGCGACAGCATTCCCTGATGGGGCGCG
GAAGCGAATGTCCTCGTGTTACAATTTGTCGGCGTACAACTCACTCTGCC
ACGTCGGCATCCACAGGACCAGTGTAGGTATCCATTGCATCTCTCGCCAG
TCGGGAGTAGTTCGCCAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8281:6192..6709+

>mRNA_Ecto-sp13_S_contig8281.19626.1 ID=mRNA_Ecto-sp13_S_contig8281.19626.1|Name=mRNA_Ecto-sp13_S_contig8281.19626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8281:6192..6709+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATAGATTAGGGAAGACATTCTTGAGCCACCTTTGGCAAGGTAGGAA
GGATCGATTGGCCATCGGTGACCGGTCTTGTCGTAACAGGGCTCCGTCCT
CTCGAGGACGCGTTGCCAATGACCTAACCGCTAAGGCACGGAACCAATTA
GAGTACGACCCCCCCCCCGACAGACAGCACGCCATACGTGCGACAGCATT
CCCTGATGGGGCGCGGAAGCGAATGTCCTCGTGTTACAATTTGTCGGCGT
ACAACTCACTCTGCCACGTCGGCATCCACAGGACCAGTGTAGGTATCCAT
TGCATCTCTCGCCAGTCGGGAGTAGTTCGCCAC