mRNA_Ecto-sp13_S_contig8270.19617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8270.19617.1
Unique NamemRNA_Ecto-sp13_S_contig8270.19617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.100e-99
Identity = 146/157 (92.99%), Postives = 149/157 (94.90%), Query Frame = 3 
Query:  189 PAGPIRRAAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            P G    AAPGDIKKWREAEIKHGRVAMLASLGVIV EQYHPFF+GPDYIGPA+DHFQEISAQF EFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   40 PLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 3.530e-97
Identity = 147/157 (93.63%), Postives = 149/157 (94.90%), Query Frame = 3 
Query:  189 PAGPIRRAAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            P G    AAPGDIKKWREAEIKHGRVAMLASLGVIV EQYHPFF+GPDYIGPA+DHFQEISAQF EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:  236 PLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 4.330e-93
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 3 
Query:  210 AAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            A P DIKKWREAEIKHGRVAMLASLGV+V EQYHP F+GPDYIGPA+DHFQEISAQ+ EFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   71 ADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 3.840e-90
Identity = 134/149 (89.93%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:  210 AAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 656
            AAPGDIKKWREAEIKHGRVAMLASLG++V E+YHP F+G D+IGPA+ HFQEISAQF EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:   71 AAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 2.940e-84
Identity = 124/150 (82.67%), Postives = 136/150 (90.67%), Query Frame = 3 
Query:  210 AAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            A PG+IK WREAEIKHGRVAMLA++GVIV EQYHP F+GPDYIGPA+DHFQEISAQF EFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:   72 AEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.020e-79
Identity = 119/156 (76.28%), Postives = 133/156 (85.26%), Query Frame = 3 
Query:  189 PAGPIRRAAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 656
            P G    A  GDIK WREAEIKHGRVAMLASLGV+V E+YHPFF+GPDYIGPA+DHFQEISA+F EFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++YSPGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVNP +IL
Sbjct:   19 PLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.820e-77
Identity = 113/150 (75.33%), Postives = 131/150 (87.33%), Query Frame = 3 
Query:  210 AAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            A PG+IK WREAEIKHGRVAMLA++GV+V EQYHPFF+GPDYIGPA+DHFQEI+A+F +FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVN  DILG
Sbjct:   69 ADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.590e-72
Identity = 122/157 (77.71%), Postives = 122/157 (77.71%), Query Frame = 3 
Query:  189 PAGPIRRAAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            P G    AAPGDIKKWREAEIKHGRVAMLASLGVIV E                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   64 PLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.190e-71
Identity = 124/177 (70.06%), Postives = 128/177 (72.32%), Query Frame = 3 
Query:  150 PARSSI-------L*QKDLRPAGPIRRAAPGDIKKWREAEIKHGRVAMLASLGVIVVEQYHPFFIGPDYIGPALDHFQEISAQFLEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            P+RSSI       L  K L P G    AAPGDIKKWRE EIKHGRVAMLASLGVIV E                            FW FSLLGMAFIEYNTI+TAFDTPSA+TGEGGLKEDY PGDLGFDPLNLKPDD AALDVMKTKELNNGRLAMIGIAGM+AQELVNPADILG
Sbjct:    7 PSRSSITAVPTLSLLSKILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAE----------------------------FWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 5.110e-67
Identity = 109/131 (83.21%), Postives = 111/131 (84.73%), Query Frame = 3 
Query:  321 IGPDYIGPALDHFQEISAQFLE------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYSPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 659
            +GPDYIGPA+DHFQEISAQF E                  FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:    1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7S5_ECTSI1.100e-9992.99Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE3.530e-9793.63LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q6_ECTSI4.330e-9390.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI3.840e-9089.93Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.940e-8482.67Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI1.020e-7976.28Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.820e-7775.33Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.590e-7277.71LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JAU1_9PHAE2.190e-7170.06LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JVY1_9PHAE5.110e-6783.21LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8270contigEcto-sp13_S_contig8270:2857..6647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score111.3
Seed ortholog evalue2.6e-22
Seed eggNOG ortholog2880.D7G7S2
Model size659
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_000590.1
Cds size300
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.621848-UTR-Ecto-sp13_S_contig8270:2856..31291681464096.621848-UTR-Ecto-sp13_S_contig8270:2856..3129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8270 2857..3129 -
1681464096.6368484-UTR-Ecto-sp13_S_contig8270:3687..37711681464096.6368484-UTR-Ecto-sp13_S_contig8270:3687..3771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8270 3688..3771 -
1681464096.6489944-UTR-Ecto-sp13_S_contig8270:3969..39711681464096.6489944-UTR-Ecto-sp13_S_contig8270:3969..3971Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8270 3970..3971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.6601648-CDS-Ecto-sp13_S_contig8270:3971..40911681464096.6601648-CDS-Ecto-sp13_S_contig8270:3971..4091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8270 3972..4091 -
1681464096.6710727-CDS-Ecto-sp13_S_contig8270:6467..66471681464096.6710727-CDS-Ecto-sp13_S_contig8270:6467..6647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8270 6468..6647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8270.19617.1prot_Ecto-sp13_S_contig8270.19617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8270 3972..6647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8270.19617.1

>prot_Ecto-sp13_S_contig8270.19617.1 ID=prot_Ecto-sp13_S_contig8270.19617.1|Name=mRNA_Ecto-sp13_S_contig8270.19617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVAT
LPGAPSSDRKIFDPLGLSDAPPPATSRSGERPRSSTGVWPCLRPLVSLS*
back to top

mRNA from alignment at Ecto-sp13_S_contig8270:2857..6647-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8270.19617.1 ID=mRNA_Ecto-sp13_S_contig8270.19617.1|Name=mRNA_Ecto-sp13_S_contig8270.19617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3791bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8270:2857..6647- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCCTCCCAGATGTTCCTTGGCACTGCCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGGTGGCCGTGCGATCTGTTGCCACTACTG
CTTCCTCCTCGAGCCTCAAGATGAGCGCTGGTTCGGACTACGTCGCGACC
CTGCCCGGAGCTCCATCCTCTGACAGAAAGGTGAGGACGTGTATGTACTT
GATGGCGTGAGCCAACACCCAAGGTAGTGTTTTGTATGCATAAGTAGTCC
AGGCTACCACAGTACCCTCGGGACCACCGTCTCTCCGCAACGTGTATCCA
TGTACAGTAGTACTGTATGCATACCCGTATCCGAAGGCTCGCTCGCTCTT
TTGTAGAATACTGAATACCGAATATGCATAGCAATAGACTACTTTGTGGG
CGTACGTATATAGACTACAGGATGGGCCAGCCAACAAGAGAATGAAATAG
TTGAAAGCGCATTACATCACGATTTATTCGAGTTGGAATCTGAAATTTTA
GCGTGTGGTTGGTATTACTAGCACCAGGTCCTAGATAGGGGAGGGGGGGG
GAGGGGGGGGGGGGAGTAATGAGTCGCGGGTGACGACTCAATACCTTGCA
GTAGGCTATTTACAATGCTGTGCAAGGTGCGAGACCGATACTCTGCGTTC
CAGGCAGCAACGTAGTAACCCAGCACGCGCATTTTGTACAGTACTTATTA
TTGCGGAGTACCGTAAGAGTCGGAGAGATGCCCCCCCCGTGTTCGTGTTT
ATTTGTCGCGTATTTCACCACCACCAGGGGGGCCTGTGTCGAAAAGGGTA
GATTTGAAACATCTCGTCGAGGACTTTCCTGAGGGGTATCGGTTGGTGTT
CACACCCTCCAACTTGTGGAGAAATAGGCTATACAAAAACGCTAATACGG
GGGTGCCATCTCTCCGACTCTTACGGTAATATCAAAACGGATCTCCTTCG
ACCTTTTACCCCTCTCCTGCTGGAAGTTGGTTGGCAAAAACATGTTCGCC
TCGCAAGAAACAGCAGTACCTCCGAGCTGTGGTTCCTCCAACGATCGGCA
CCTACAGCACAGCACTGACACAGACACAAATGAACATAGGTATTGCATAG
CTTACATAAATACACATGTAGTGCTGCTGCTTTGCTGTAATGGCGATGAC
TCCCATCTCTCTTACTTCTATTCGGCAGTGCATGCATGCTGGAAAAATGC
CATGGAATGGCGCTGGGCACCGGAAAGACCTTCTGTTTTTTTACAGTAGT
TTTGTTTCCGAGTGACCCCTCCTGACACACGAAAGTGACAGGGATAACAA
ACGTATCCGCCTCGAGCTGTGTCCATGCTCCGTGTTGTGTGGAGATGAAC
ACCGACAGGGAGGCTGTAGGACGCTCAGAAACGCGAGGGTTTGGCACAGC
CTGCAACAAAAAAAAATGCCGAGTCTCTCTGCTGGGATCATGAGAGTTTG
TCCGTAGCTTTTTGCCCCAGGCGCAAAGGTTTCGTGTTCCGATTACATCC
GTCTCCCCACACGCCAAAGCAACAGCCGTGGCGATAACATCCGCCACGAG
CTGTGTGCATGGCTCCCTTCCCTCGTCATTGCGGTCTTGTCCCCCCAGCT
GTGTTGAATGTTTGTTTAGCCTACTGATTGCTTCCTCTGTGTCCCCCGGG
TTGGAAACCGAGCGTCTAACTGCGTGTGGATGTGTGTACAGATCTCCACT
TTTGCGTTCCTTTTCCTCTCGTCGAACTCCCGGGGACGTTTCGATGATTT
TGGTAGCAAATAAGTGTCAAGCAATCTGTTGTCAGAGCGCGATGAAACCG
GTGTGATGAAGAGTGCCCTAATAAGATTCCTCCGCACAACCCAGCGCATC
GTAAATCGCTGCTCTATAGACCTCGTTGTCGTCATTGCGATAACCCCACA
TGTCCTTAACTTTCTTGTGTTTTGTATCGGATTCTTTTCGAGGCCATCAC
TCGTGGTGGAAGATGATGTGAGCGTTGCAAGTACCATCAATTTTCTCGCA
AAGCTCCAAGGTAAGCGCACACCAAATTTCAGCTTATTCTGTGAAACTTT
TTAATGCTGATTTAAGTGCCGAGAGTATCCCTCACTACGCCGCCAAGTGA
TCGTTTCATACTTGTACCTATATCAGATTCGAAAAATTCTGGCACCTGCG
CTTTCCCGATTGTCTCAAAAGAGTAGCCACCAAATTTCAAGCCTGAATTC
GTGGAAACGCCAGCATGAGACGCGAATGAACGAAAGTGAACTTCTTGGCT
GGCCCAGCTTGTACACAGGAACCAACATGGACACGTTGGTATAATAGACT
GCATGAGACATGACATCGTCACATGAAGGGCGAATCTCATAAGTCTTCTT
CTGTGTTTTACATACATAGCCGTGGATGCATTATCCTGGGCCGCTATCGA
CTCCACTACGAACGGAGAGACTGTGAATCGACAGATCAATTCGATTGCGA
TGCCGTTACCGCTGGATCTATTCATGTGTGAGGTCTTACCCTCTGGCTCA
ATTGTCTCACCCGTTGCGGCCTTCGATCACCGCTGTCTCACACTCTCGTG
CGTCAGATCTTCGACCCGCTGGGCCTATCCGACGCGCCGCCCCCGGCGAC
ATCAAGAAGTGGCGAGAGGCCGAGATCAAGCACGGGCGTGTGGCCATGCT
TGCGTCCCTTGGTGTCATTGTCGTAGAGGTGAGGAAAAGCATACATGACG
GCACACGATGGACAGATGCCTTCAGAAAGGGTGGCATGTTGGTTTTGTTC
TCTCAGCGATACTATTATCCTGCGGTAGACACAAGACCTACTCGAATCCT
TCGTGTTTATCATGCATTTCGTCCCACCGCATCACGTTGTGATCGCTCTC
GTCCCTATCGTCTTTGCCCACTCTAGCAATACCACCCCTTTTTTATCGGC
CCGGACTATATTGGCCCCGCACTGGACCACTTCCAGGAGATCAGCGCCCA
ATTCCTTGAGGTGAGACTGGCGCATTTTGTTGCTTACATGATGTGTGAGG
CACTTGAAAAGTCCGGTGTGATAATATAATACAGCAAAGTGGCGTTATTT
CGGCGACTCAGGTTAGACACGCGATTCTCTTGTAGATCGACCATTGCTGG
AGAAGTTTTACACACATGATTCCAGCAACAAATTTCCTGTCCCTCCCTCC
AATACCAAACCCGAGTCCTAAATTTCGGGACAGCGTGACCTCGCGAGAGC
AAGACACTATCTGCACACTTGAAACGAGATATAGCTTATGGAGATGTTCC
CAGTGATGTGGTGCCGACGTGCTGGTACCAGTTGGTTGATCCAGTCAGTT
GTACGTTGCGCGAAGGCCTCTGCACCTTGTTCGACCTAGCATAAAGTACT
CCCGTGCACGTCCTCGAGTATTGTTCCTCCTGGCTAAACGTGGATGCGGT
GGTGTCAACGTTGCCACCCTTCTCTCGGCACCATGTGGTCGACGAATGCT
GTTTGTTCACACAACCACTCCCTCTCGGTATTTCTCTGCCCCTCATTCCC
GTGTCTTCCAAACCTCAGTTCTGGGCGTTCTCCCTCCTGGGCATGGCCTT
CATCGAGTACAACACCATCATGACGGCTTTCGACACCCCCAGCGCTGTCA
CCGGCGAGGGCGGCCTGAAGGAGGACTACTCTCCGGGAGACCTCGGCTTC
GACCCCCTCAACCTCAAGCCCGACGACGAGGCGGCTCTGGACGTGATGAA
GACCAAGGAGCTGAACAACGGCCGTTTGGCCATGATCGGCATCGCCGGCA
TGCTGGCGCAGGAGCTGGTCAATCCGGCCGACATCCTCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8270:2857..6647-

>mRNA_Ecto-sp13_S_contig8270.19617.1 ID=mRNA_Ecto-sp13_S_contig8270.19617.1|Name=mRNA_Ecto-sp13_S_contig8270.19617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8270:2857..6647- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGCCTCCCAGATGTTCCTTGGCACTGCCGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCGGTGGCCGTGCGATCTGTTGCCACTACTG
CTTCCTCCTCGAGCCTCAAGATGAGCGCTGGTTCGGACTACGTCGCGACC
CTGCCCGGAGCTCCATCCTCTGACAGAAAGATCTTCGACCCGCTGGGCCT
ATCCGACGCGCCGCCCCCGGCGACATCAAGAAGTGGCGAGAGGCCGAGAT
CAAGCACGGGCGTGTGGCCATGCTTGCGTCCCTTGGTGTCATTGTCGTAG
back to top