mRNA_Ecto-sp13_S_contig1235.1961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1235.1961.1
Unique NamemRNA_Ecto-sp13_S_contig1235.1961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI)

HSP 1 Score: 1013 bits (2620), Expect = 0.000e+0
Identity = 514/551 (93.28%), Postives = 523/551 (94.92%), Query Frame = 1
Query:   40 QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGQPRDTGAGEGNADLENGAKKEEATGSGGTHESASLPEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPTMGPEVVGRIESGAKRRLVGSSPRGMT-STRNARARVAHVLDDEVMVEMDSHSLLGYRLVSGETNPRGCREGCSFKKSCEPGGRSMDCCRIWREHNGRCHGGGAIVGREYAKVGGTCVATPPFSLGGCPGTGECESLYAKDRSSVGRAMDALGRDLPH 1689
            QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHG PRDTGAGEGN DLENGAKKEEA GSGGTHESASL EHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARA+SDQ+A+PGDGVPPEALPSLVTMKRSQLKGAAEQLR+RAKRLRETT+VQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQP+NTQ LKAFEVQLVSVQTGMCEHSLRASFPARSDRCRR D A GDC KPPPASNGGAELK ERRS+V MDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTP M PEVVGRIESGAKRRLVG SPRGMT ST NARARVAHVLDDEVMVEMDSHSLLGYRLVS   NP GCREGC FKKSCEPG RSMD CRIWREHNGRCH GGAIVGREY +VG TCVATPPFSLGGCPG+GE ESLYAKDRSSVGRAMDALG DLPH
Sbjct:   54 QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGHPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAAGDCRKPPPASNGGAELKLERRSDVRMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGAKRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLVSA--NPGGCREGCQFKKSCEPGSRSMDFCRIWREHNGRCHDGGAIVGREYVEVGWTCVATPPFSLGGCPGSGERESLYAKDRSSVGRAMDALGGDLPH 602          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A0P1A5X6_PLAHL (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5X6_PLAHL)

HSP 1 Score: 94.4 bits (233), Expect = 1.670e-16
Identity = 81/278 (29.14%), Postives = 132/278 (47.48%), Query Frame = 1
Query:  316 PEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTG-MCEHSLRASFPARSDRCR-RMDTAEGDCGKPPPASNGGAELK--SERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
            P +  +  V     A+ EL+QL++ +DL R  EF+          ++ R + + TA     +  E L  +V  KR+Q+K +   L    K + +T + + VF  G+ H+ + W+I APNHG +  P + GEPL+VDCS+GSAG   VP + +           +L+  E G +  +       +  ++ L + +TG + +++L   FP   +  R  MD ++          N   +LK   ER   +L          +Q SVF EE+F TL  EAL
Sbjct:  104 PRNYYRPMVIELQAAVAELHQLINSIDLIRRREFL----------EEMRCIRENTA-----LQKEELEHVVESKRAQVKESGTILLDGVKTIAKTVKKESVFFLGITHMLRKWKICAPNHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQSQSIADMA----YAELSRTERGFVRVKTPENFLARTIQLTLKAKETGKLGKYTL--PFPTLINVTRTEMDASD----------NTPEDLKVLEERNLSIL--------KAVQFSVFCEELFYTLMKEAL 342          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A484EDK9_BRELC (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDK9_BRELC)

HSP 1 Score: 92.8 bits (229), Expect = 5.250e-16
Identity = 97/365 (26.58%), Postives = 152/365 (41.64%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEA------QPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPTMGPEVVGRIESGAKRRLVGSSPRGMTSTRNARARVAHVLDDEVMVEMDSHSLLGYRLVSGETNPR 1416
            V+    A  EL+QL++ +DL R  EF+          ++ R + + TA        E L  +V  KR+ +K +   L    + L +T E + +F QGV  + ++W+I AP HG +  P + GEPL+VDCS+GSAG   VP         +H  +  L   E  R E        P N  + +  +++L++  TG        S P        MD  +    KP       A+LK      VL +  E  +  +Q S+F EE+F TL  EAL D         D                     +   +       V    +  +S+      V HVLDDE+ + ++    L  +L+  E+ P+
Sbjct:  114 VSELQAATAELHQLINSIDLIRRHEFL----------EEMRCIRENTAPKR-----EELEYVVEAKRAHVKESGSILLNGVQALAKTVEKESIFFQGVTEMLRNWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSLFVP---------QHRSIADLAYAELSRTEKGLILVKTPENFLA-RTIQLKLIAKDTGKEGKYTLPSPPLLHKTKTEMDKLDD---KP-------ADLK------VLSNRNESILKAVQFSIFCEELFYTLMKEALHDASKWTDTAYD---------------------ISNYD-------VKKHNKDDSSSSGTHISVLHVLDDEIHLRVNERYHLTIKLIDMESIPK 409          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: D0MYT7_PHYIT (Mediator of RNA polymerase II transcription subunit 17 n=18 Tax=Phytophthora TaxID=4783 RepID=D0MYT7_PHYIT)

HSP 1 Score: 91.7 bits (226), Expect = 1.160e-15
Identity = 80/269 (29.74%), Postives = 121/269 (44.98%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRL---QHSVFWEEVFETLKAEAL 1137
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K++Q+K +   L    + L +T E + VF QG+  + + W+I AP HG +  P + GEPL+VDCS+GSAG   VP T +         +  L   E  R E      ++ + F  + + ++    +     +F   S     M  AE D              K E   E L    E+++S L   Q SVF EE+F TL  EAL
Sbjct:  116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKQAQVKESGAILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFVPQTRS---------IADLAYAELSRTEKGLVRVKTPEDFLARAIQIKLEAKDTGKEGAFTLPSPHLVPMTKAEMD--------------KLEDTPEDLKTLEERNVSILKAVQFSVFCEELFCTLMKEAL 346          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A3M6V7J4_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7J4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.620e-15
Identity = 77/266 (28.95%), Postives = 118/266 (44.36%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K +Q+K +   L    + L +T E + VF QG++ + + W+I AP HG +  P + GEPL+VDCS+GSAG   VP   +         +  L   E  R E      ++ + F  + + ++    +     S+   S     M  AE D     P      ++  ER   VL          +Q SVF EE+F TL  EAL
Sbjct:  119 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSAQVKESGTILLNGVEALAKTVEKESVFFQGIIQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQNRS---------IADLAYAELSRTEKGLVRAKTPEDFLTRTIQLKLEANDIGKEGSYTLPSPTLIHMTKAELDGLHDTPED---LKVLEERNMSVL--------KAVQFSVFCEELFYTLMKEAL 349          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A3F2S100_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S100_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-15
Identity = 76/266 (28.57%), Postives = 117/266 (43.98%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K +Q+K     L    + L +T E + VF QG+  + + W+I AP HG +  P + GEPL+VDCS+GSAG    P T +         + +L   E  R E      ++ + F  + + ++          ++   S     M  AE D  +  P      ++  ER   VL          +Q SVF EE+F TL  EAL
Sbjct:  121 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKECGTILMDGVEELAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IAELAFAELNRTEKGLVRVKTPEDFLTRTIQLKLEATGSGTEGNYTLPSPTVITMTKAEMDKLENTPEDQ---KILEERNVSVL--------KAVQFSVFCEELFYTLMKEAL 351          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A6A3Z337_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z337_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.150e-14
Identity = 74/266 (27.82%), Postives = 117/266 (43.98%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K +Q+K +   L    + L +T E + VF QG+  + + W+I AP HG +  P + GEPL+VDCS+GSAG    P T +         +  L   E  R E      ++ + F  + + ++    +     ++         M  A+ D  +  P      ++  ER   VL          +Q SVF EE+F TL  EAL
Sbjct:  118 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKSAQVKESGTILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IADLAYAELSRTEKGLVRVKTPEDFLTRTIQLRLEATDTGKEGNYTLPPPHLIHMTKADMDALEDTPED---VKILEERNVSVLR--------AVQFSVFCEELFYTLMKEAL 348          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: H3GXL2_PHYRM (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXL2_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 3.190e-13
Identity = 77/266 (28.95%), Postives = 113/266 (42.48%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K  Q+K ++  L    + L +T E + VF QG+ H+ + W+I AP HG +  P + GEPL+VDCS+GSAG    P T +         +  L   E  R E      ++ + F               L  +  A  D+    DT E              ++  ER   VL          +Q SVF EE+F TL  EAL
Sbjct:  117 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSEQVKESSTILLDGVEALAKTVEKESVFFQGITHMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFAPQTRS---------IADLAYAELSRTEKGLVRAKTPEDF---------------LARTIQAEMDKLE--DTPE------------DLKILEERNISVL--------KAVQFSVFCEELFYTLMKEAL 321          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A2P4Y3J1_9STRA (Mediator of RNA polymerase II transcription subunit 17 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3J1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-12
Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFT 765
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K +Q+K +   L    + L +T E + VF  G+  + + W+I AP HG +  P + GEPL+VDCS+GSAG   VP T
Sbjct:  116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKESGTILLDGVEALAKTVETESVFFHGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSTFVPQT 242          
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A2P4Y4F6_9STRA (Mediator of RNA polymerase II transcription subunit 17 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4F6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-12
Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFT 765
            V     A+ EL+QL++ +DL R  +F+          ++ R + + TA        E L  LV  K +Q+K +   L    + L +T E + VF  G+  + + W+I AP HG +  P + GEPL+VDCS+GSAG   VP T
Sbjct:  116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKESGTILLDGVEALAKTVETESVFFHGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSTFVPQT 242          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FYM3_ECTSI0.000e+093.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0P1A5X6_PLAHL1.670e-1629.14Mediator of RNA polymerase II transcription subuni... [more]
A0A484EDK9_BRELC5.250e-1626.58Mediator of RNA polymerase II transcription subuni... [more]
D0MYT7_PHYIT1.160e-1529.74Mediator of RNA polymerase II transcription subuni... [more]
A0A3M6V7J4_9STRA1.620e-1528.95Mediator of RNA polymerase II transcription subuni... [more]
A0A3F2S100_9STRA2.840e-1528.57Mediator of RNA polymerase II transcription subuni... [more]
A0A6A3Z337_9STRA1.150e-1427.82Mediator of RNA polymerase II transcription subuni... [more]
H3GXL2_PHYRM3.190e-1328.95Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4Y3J1_9STRA1.200e-1234.51Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4Y4F6_9STRA2.690e-1234.51Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1235contigEcto-sp13_S_contig1235:14216..17178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score105.5
Seed ortholog evalue8.1e-20
Seed eggNOG ortholog65071.PYU1_T013564
Model size1692
Exons6
EggNOG free text desc.function. Source PGD
EggNOG OGs1MA8S@121069,28NDY@1,2QUZE@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_002760.1
Cds size1692
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1235.1961.1prot_Ecto-sp13_S_contig1235.1961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1235 14216..17178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.3842254-CDS-Ecto-sp13_S_contig1235:14215..143311681462657.3842254-CDS-Ecto-sp13_S_contig1235:14215..14331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 14216..14331 +
1681462657.3987525-CDS-Ecto-sp13_S_contig1235:14469..148331681462657.3987525-CDS-Ecto-sp13_S_contig1235:14469..14833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 14470..14833 +
1681462657.4071736-CDS-Ecto-sp13_S_contig1235:15123..153241681462657.4071736-CDS-Ecto-sp13_S_contig1235:15123..15324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 15124..15324 +
1681462657.4149706-CDS-Ecto-sp13_S_contig1235:15734..164581681462657.4149706-CDS-Ecto-sp13_S_contig1235:15734..16458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 15735..16458 +
1681462657.4244633-CDS-Ecto-sp13_S_contig1235:16619..168081681462657.4244633-CDS-Ecto-sp13_S_contig1235:16619..16808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 16620..16808 +
1681462657.4362414-CDS-Ecto-sp13_S_contig1235:17080..171781681462657.4362414-CDS-Ecto-sp13_S_contig1235:17080..17178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1235 17081..17178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1235.1961.1

>prot_Ecto-sp13_S_contig1235.1961.1 ID=prot_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp
XSAEKDENGVESPQKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLA
VQQTLADHAKEVEDQGDSHGQPRDTGAGEGNADLENGAKKEEATGSGGTH
ESASLPEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDE
DQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRET
TEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGK
SVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQT
GMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVL
MDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVG
PRTGTPTMGPEVVGRIESGAKRRLVGSSPRGMTSTRNARARVAHVLDDEV
MVEMDSHSLLGYRLVSGETNPRGCREGCSFKKSCEPGGRSMDCCRIWREH
NGRCHGGGAIVGREYAKVGGTCVATPPFSLGGCPGTGECESLYAKDRSSV
GRAMDALGRDLPH*
back to top

mRNA from alignment at Ecto-sp13_S_contig1235:14216..17178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1235.1961.1 ID=mRNA_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1235:14216..17178+ (Ectocarpus species13 EcNAP12_S_4_19m)
NNAAGTGCTGAGAAGGACGAGAATGGCGTAGAGTCGCCTCAGAAAATCGC CTTGGTACCGTTCGTAGCGGACCCAGTACACCAATACGACGGCGACGGCA ATGCTTCTTGCGCCAGGTGTGACTAGTTCGTTTTGCATGGTTTGATTCTG GTTGCGTGGTACTGCGGAAATTGTTGTTTGGTTCGGTGATGGCTGCAGCA CGCACACGTCCGTCGAAGTTCATCATCCTACCGCCCTCTTTGGCGCCTCT CCAGGGAACGCTCTGTCCAGGACGACTTTCAGCTTGCAGTCCAGCAGACC CTCGCCGACCATGCCAAAGAAGTTGAAGACCAAGGCGATAGCCACGGTCA GCCGCGAGATACGGGTGCAGGGGAGGGCAATGCCGATCTTGAAAACGGGG CCAAGAAGGAGGAAGCAACCGGCAGCGGAGGCACTCACGAATCTGCATCT TTACCTGAACACCCGTTGCAGAGCGCCGTCACTTCGTTTGACATGGCGTT GGGAGAGCTCAACCAGCTAGTCCATCTTGTCGATCTGGCCCGGGCGGGCG AATTCATGGCACTGGAGAGGGTGACACCAAGTGACGAGGACCAAGCCAGG GCATTGTCTGACCAAACGGTGAGAGGTTATACCCGCGCGAGAGTCGGCTA CATTCGACAGATTTCTCAGCAGTTGGTACCAATTTTTGGTCGACATTTTG TTCTCAAATTCCTCAAGAGAGAGTTCCGTGCGGCAAGCATCTCAACAGGC GGTCTAGGTCTAGACTGGGAACTTGTAATAACAGCAGTGTTGTATGCTAC ATGACACGGGGATATCTTAGGAACGTTGTCGTTCCCCGAATAAATTCACA TCCATTTTTCGATCATGTGCGTAGATCGAGATTCCGTTGGCGTGTCCTCT CCTTACAGGCGAAACCTGGAGACGGTGTACCGCCGGAAGCTCTCCCATCG TTGGTGACCATGAAGAGGAGCCAGTTGAAAGGGGCGGCCGAGCAGCTTCG CAAACGAGCCAAGCGACTGCGAGAAACGACTGAAGTGCAACTGGTGTTTC AGCAAGGCGTGGTGCATCTGAGGAAGAGTTGGAGAATAGTGGCCCCGAAC CATGGCAAGGTGTGCGTGTGTGGGTTTCTTCATGAGCAGGGACCGCTACA GCGGTCCTACTAATGGAAATTCGTCAGTCTCCTGCACGTAGGCAAACATA CACGTTGTCTACTCACGTCATCGAGTTCCCCAGACAGCAGTGTGCCTGGA TGTTTTTATTTGTTGGCACTGACCGCGCTAGCCAACCGACCAATGATAGA CGTCGGTAGCTGGACGAAAAACGCCAAGGTGACTGCTTTTTATTGTGGCA CGAACGGCCACTACTGAAAACTTGTGTGAATTTTTCACGGCCAACGTCGG TCTGTGCAACACAACATGTGCGCGTAGCAGCCTGGCATTCGGTTTGACGG AGGGGATCGTCTCGAGCCCTTGTCAACCTCGTGCGCCTTTGCGCCTGTGC GTCGTATCTGTGGTCGTAGGTCAACGTGCCGCTTCAAGTGGGCGAACCGC TGTCAGTCGACTGCAGTTTCGGGAGTGCCGGTGGCAAGTCTGTGCCGTTC ACCGCGGCTGCGGGTACCCGACACAGGCATCCGTGGCTGTTCCAACTGAC GTGCGGTGAGGGCGGGCGGCTGGAGGCGCAACCCACGAATACGCAGAGTC TCAAGGCGTTTGAAGTTCAGCTCGTATCGGTTCAAACCGGCATGTGCGAA CATTCCCTTAGAGCTAGCTTTCCTGCACGAAGCGATCGATGCAGAAGGAT GGACACGGCAGAAGGAGACTGTGGAAAACCACCACCCGCAAGCAATGGAG GAGCGGAGCTTAAGTCGGAGAGACGGAGCGAGGTTCTGATGGACGACCTT GAGCAACACATATCTCGCCTACAGCATAGCGTCTTTTGGGAGGAGGTGTT CGAAACTCTCAAGGCAGAGGCTTTGGTTGACGGGAAGGATGGATGGCTGG TTCATCAAGATGCGAGATGCGGCTCGGATGTTGTCGGACCTCGTACTGGG ACGCCGACGATGGGGCCTGAAGTGGTCGGAAGGATCGAATCAGGAGCAAA ACGGAGATTAGTAGGCTCGAGCCCACGAGGGATGACTTCCACTCGGAACG CTAGGGCTCGGGTGGCGCACGTGTTGGACGACGAAGTAATGGTGGAAATG GACAGCCACTCTCTCTTGGGGTATAGATTGGTCTCGGGCGAGAGTCCAGC AAGTGGCTGGAGTGGGAGGCCTGGAAGTGACTTGCCTGCGAAAGGCGGAA CTTGCCCGGAGGATGACAAATCTAAGGGACCAACGATGACGCAGTCGGCG TCGCTCTGTCAACTGGCCTTGTTGTACTGCGGGAGTCTTATCCGGGAACA ACAGCGAACCCAAGAGGTTGCAGGGAGGGTTGTTCGTTCAAAAAGTCCTG TGAGCCGGGAGGTAGGAGCATGGATTGCTGCCGAATCTGGAGGGAGCACA ACGGGAGGTGCCACGGCGGGGGGGCGATTGTCGGCCGCGAGTACGCGAAA GTCGGTGGGACTTGTGTTGCTACACCACCTTTTTCGCTCGGAGGTAAGTC AACTATATGCGTGTTTGTGGCGCACGGTTTGAAACACGCGCTCAGGAGAT ACCAACACAGGAGCAGATAAAAACACGCACGAAGATTCCTTTTTTGGTGC GGGTTTGCGTGCATAGATTGAACGTCTTGACGTTTTGCCCTTTCGCGTTT TACAACTGCAGGAAGTTTCTCATCGTGTTTCAACATCCTTGTCAAACTGA AATATCCAGCTTACACTGCGCTCTGGTTGTTACGTTGGCCGAAATTGGAC ACCCGTGTGCACCAGGTTGTCCAGGGACTGGCGAATGTGAGTCGCTCTAT GCAAAAGATCGGTCTTCCGTTGGCCGTGCGATGGACGCACTTGGAAGAGA CCTACCGCACTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1235:14216..17178+

>mRNA_Ecto-sp13_S_contig1235.1961.1 ID=mRNA_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1235:14216..17178+ (Ectocarpus species13 EcNAP12_S_4_19m)
NNAAGTGCTGAGAAGGACGAGAATGGCGTAGAGTCGCCTCAGAAAATCGC
CTTGGTACCGTTCGTAGCGGACCCAGTACACCAATACGACGGCGACGGCA
ATGCTTCTTGCGCCAGGGAACGCTCTGTCCAGGACGACTTTCAGCTTGCA
GTCCAGCAGACCCTCGCCGACCATGCCAAAGAAGTTGAAGACCAAGGCGA
TAGCCACGGTCAGCCGCGAGATACGGGTGCAGGGGAGGGCAATGCCGATC
TTGAAAACGGGGCCAAGAAGGAGGAAGCAACCGGCAGCGGAGGCACTCAC
GAATCTGCATCTTTACCTGAACACCCGTTGCAGAGCGCCGTCACTTCGTT
TGACATGGCGTTGGGAGAGCTCAACCAGCTAGTCCATCTTGTCGATCTGG
CCCGGGCGGGCGAATTCATGGCACTGGAGAGGGTGACACCAAGTGACGAG
GACCAAGCCAGGGCATTGTCTGACCAAACGGCGAAACCTGGAGACGGTGT
ACCGCCGGAAGCTCTCCCATCGTTGGTGACCATGAAGAGGAGCCAGTTGA
AAGGGGCGGCCGAGCAGCTTCGCAAACGAGCCAAGCGACTGCGAGAAACG
ACTGAAGTGCAACTGGTGTTTCAGCAAGGCGTGGTGCATCTGAGGAAGAG
TTGGAGAATAGTGGCCCCGAACCATGGCAAGGTCAACGTGCCGCTTCAAG
TGGGCGAACCGCTGTCAGTCGACTGCAGTTTCGGGAGTGCCGGTGGCAAG
TCTGTGCCGTTCACCGCGGCTGCGGGTACCCGACACAGGCATCCGTGGCT
GTTCCAACTGACGTGCGGTGAGGGCGGGCGGCTGGAGGCGCAACCCACGA
ATACGCAGAGTCTCAAGGCGTTTGAAGTTCAGCTCGTATCGGTTCAAACC
GGCATGTGCGAACATTCCCTTAGAGCTAGCTTTCCTGCACGAAGCGATCG
ATGCAGAAGGATGGACACGGCAGAAGGAGACTGTGGAAAACCACCACCCG
CAAGCAATGGAGGAGCGGAGCTTAAGTCGGAGAGACGGAGCGAGGTTCTG
ATGGACGACCTTGAGCAACACATATCTCGCCTACAGCATAGCGTCTTTTG
GGAGGAGGTGTTCGAAACTCTCAAGGCAGAGGCTTTGGTTGACGGGAAGG
ATGGATGGCTGGTTCATCAAGATGCGAGATGCGGCTCGGATGTTGTCGGA
CCTCGTACTGGGACGCCGACGATGGGGCCTGAAGTGGTCGGAAGGATCGA
ATCAGGAGCAAAACGGAGATTAGTAGGCTCGAGCCCACGAGGGATGACTT
CCACTCGGAACGCTAGGGCTCGGGTGGCGCACGTGTTGGACGACGAAGTA
ATGGTGGAAATGGACAGCCACTCTCTCTTGGGGTATAGATTGGTCTCGGG
CGAGACGAACCCAAGAGGTTGCAGGGAGGGTTGTTCGTTCAAAAAGTCCT
GTGAGCCGGGAGGTAGGAGCATGGATTGCTGCCGAATCTGGAGGGAGCAC
AACGGGAGGTGCCACGGCGGGGGGGCGATTGTCGGCCGCGAGTACGCGAA
AGTCGGTGGGACTTGTGTTGCTACACCACCTTTTTCGCTCGGAGGTTGTC
CAGGGACTGGCGAATGTGAGTCGCTCTATGCAAAAGATCGGTCTTCCGTT
GGCCGTGCGATGGACGCACTTGGAAGAGACCTACCGCACTAG
back to top