mRNA_Ecto-sp13_S_contig1235.1961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI) HSP 1 Score: 1013 bits (2620), Expect = 0.000e+0 Identity = 514/551 (93.28%), Postives = 523/551 (94.92%), Query Frame = 1
Query: 40 QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGQPRDTGAGEGNADLENGAKKEEATGSGGTHESASLPEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPTMGPEVVGRIESGAKRRLVGSSPRGMT-STRNARARVAHVLDDEVMVEMDSHSLLGYRLVSGETNPRGCREGCSFKKSCEPGGRSMDCCRIWREHNGRCHGGGAIVGREYAKVGGTCVATPPFSLGGCPGTGECESLYAKDRSSVGRAMDALGRDLPH 1689
QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHG PRDTGAGEGN DLENGAKKEEA GSGGTHESASL EHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARA+SDQ+A+PGDGVPPEALPSLVTMKRSQLKGAAEQLR+RAKRLRETT+VQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQP+NTQ LKAFEVQLVSVQTGMCEHSLRASFPARSDRCRR D A GDC KPPPASNGGAELK ERRS+V MDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTP M PEVVGRIESGAKRRLVG SPRGMT ST NARARVAHVLDDEVMVEMDSHSLLGYRLVS NP GCREGC FKKSCEPG RSMD CRIWREHNGRCH GGAIVGREY +VG TCVATPPFSLGGCPG+GE ESLYAKDRSSVGRAMDALG DLPH
Sbjct: 54 QKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGHPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRTDAAAGDCRKPPPASNGGAELKLERRSDVRMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGAKRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLVSA--NPGGCREGCQFKKSCEPGSRSMDFCRIWREHNGRCHDGGAIVGREYVEVGWTCVATPPFSLGGCPGSGERESLYAKDRSSVGRAMDALGGDLPH 602
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A0P1A5X6_PLAHL (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5X6_PLAHL) HSP 1 Score: 94.4 bits (233), Expect = 1.670e-16 Identity = 81/278 (29.14%), Postives = 132/278 (47.48%), Query Frame = 1
Query: 316 PEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTG-MCEHSLRASFPARSDRCR-RMDTAEGDCGKPPPASNGGAELK--SERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
P + + V A+ EL+QL++ +DL R EF+ ++ R + + TA + E L +V KR+Q+K + L K + +T + + VF G+ H+ + W+I APNHG + P + GEPL+VDCS+GSAG VP + + +L+ E G + + + ++ L + +TG + +++L FP + R MD ++ N +LK ER +L +Q SVF EE+F TL EAL
Sbjct: 104 PRNYYRPMVIELQAAVAELHQLINSIDLIRRREFL----------EEMRCIRENTA-----LQKEELEHVVESKRAQVKESGTILLDGVKTIAKTVKKESVFFLGITHMLRKWKICAPNHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQSQSIADMA----YAELSRTERGFVRVKTPENFLARTIQLTLKAKETGKLGKYTL--PFPTLINVTRTEMDASD----------NTPEDLKVLEERNLSIL--------KAVQFSVFCEELFYTLMKEAL 342
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A484EDK9_BRELC (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDK9_BRELC) HSP 1 Score: 92.8 bits (229), Expect = 5.250e-16 Identity = 97/365 (26.58%), Postives = 152/365 (41.64%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEA------QPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPTMGPEVVGRIESGAKRRLVGSSPRGMTSTRNARARVAHVLDDEVMVEMDSHSLLGYRLVSGETNPR 1416
V+ A EL+QL++ +DL R EF+ ++ R + + TA E L +V KR+ +K + L + L +T E + +F QGV + ++W+I AP HG + P + GEPL+VDCS+GSAG VP +H + L E R E P N + + +++L++ TG S P MD + KP A+LK VL + E + +Q S+F EE+F TL EAL D D + + V + +S+ V HVLDDE+ + ++ L +L+ E+ P+
Sbjct: 114 VSELQAATAELHQLINSIDLIRRHEFL----------EEMRCIRENTAPKR-----EELEYVVEAKRAHVKESGSILLNGVQALAKTVEKESIFFQGVTEMLRNWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSLFVP---------QHRSIADLAYAELSRTEKGLILVKTPENFLA-RTIQLKLIAKDTGKEGKYTLPSPPLLHKTKTEMDKLDD---KP-------ADLK------VLSNRNESILKAVQFSIFCEELFYTLMKEALHDASKWTDTAYD---------------------ISNYD-------VKKHNKDDSSSSGTHISVLHVLDDEIHLRVNERYHLTIKLIDMESIPK 409
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: D0MYT7_PHYIT (Mediator of RNA polymerase II transcription subunit 17 n=18 Tax=Phytophthora TaxID=4783 RepID=D0MYT7_PHYIT) HSP 1 Score: 91.7 bits (226), Expect = 1.160e-15 Identity = 80/269 (29.74%), Postives = 121/269 (44.98%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRL---QHSVFWEEVFETLKAEAL 1137
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K++Q+K + L + L +T E + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG VP T + + L E R E ++ + F + + ++ + +F S M AE D K E E L E+++S L Q SVF EE+F TL EAL
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKQAQVKESGAILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFVPQTRS---------IADLAYAELSRTEKGLVRVKTPEDFLARAIQIKLEAKDTGKEGAFTLPSPHLVPMTKAEMD--------------KLEDTPEDLKTLEERNVSILKAVQFSVFCEELFCTLMKEAL 346
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A3M6V7J4_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7J4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.620e-15 Identity = 77/266 (28.95%), Postives = 118/266 (44.36%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K +Q+K + L + L +T E + VF QG++ + + W+I AP HG + P + GEPL+VDCS+GSAG VP + + L E R E ++ + F + + ++ + S+ S M AE D P ++ ER VL +Q SVF EE+F TL EAL
Sbjct: 119 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSAQVKESGTILLNGVEALAKTVEKESVFFQGIIQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSSFVPQNRS---------IADLAYAELSRTEKGLVRAKTPEDFLTRTIQLKLEANDIGKEGSYTLPSPTLIHMTKAELDGLHDTPED---LKVLEERNMSVL--------KAVQFSVFCEELFYTLMKEAL 349
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A3F2S100_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S100_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.840e-15 Identity = 76/266 (28.57%), Postives = 117/266 (43.98%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K +Q+K L + L +T E + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG P T + + +L E R E ++ + F + + ++ ++ S M AE D + P ++ ER VL +Q SVF EE+F TL EAL
Sbjct: 121 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKECGTILMDGVEELAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IAELAFAELNRTEKGLVRVKTPEDFLTRTIQLKLEATGSGTEGNYTLPSPTVITMTKAEMDKLENTPEDQ---KILEERNVSVL--------KAVQFSVFCEELFYTLMKEAL 351
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A6A3Z337_9STRA (Mediator of RNA polymerase II transcription subunit 17 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z337_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.150e-14 Identity = 74/266 (27.82%), Postives = 117/266 (43.98%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K +Q+K + L + L +T E + VF QG+ + + W+I AP HG + P + GEPL+VDCS+GSAG P T + + L E R E ++ + F + + ++ + ++ M A+ D + P ++ ER VL +Q SVF EE+F TL EAL
Sbjct: 118 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVEAKSAQVKESGTILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSIFAPQTRS---------IADLAYAELSRTEKGLVRVKTPEDFLTRTIQLRLEATDTGKEGNYTLPPPHLIHMTKADMDALEDTPED---VKILEERNVSVLR--------AVQFSVFCEELFYTLMKEAL 348
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: H3GXL2_PHYRM (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXL2_PHYRM) HSP 1 Score: 84.0 bits (206), Expect = 3.190e-13 Identity = 77/266 (28.95%), Postives = 113/266 (42.48%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPTNTQSLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRRMDTAEGDCGKPPPASNGGAELKSERRSEVLMDDLEQHISRLQHSVFWEEVFETLKAEAL 1137
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K Q+K ++ L + L +T E + VF QG+ H+ + W+I AP HG + P + GEPL+VDCS+GSAG P T + + L E R E ++ + F L + A D+ DT E ++ ER VL +Q SVF EE+F TL EAL
Sbjct: 117 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEHLVESKSEQVKESSTILLDGVEALAKTVEKESVFFQGITHMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFAPQTRS---------IADLAYAELSRTEKGLVRAKTPEDF---------------LARTIQAEMDKLE--DTPE------------DLKILEERNISVL--------KAVQFSVFCEELFYTLMKEAL 321
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A2P4Y3J1_9STRA (Mediator of RNA polymerase II transcription subunit 17 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3J1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.200e-12 Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFT 765
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K +Q+K + L + L +T E + VF G+ + + W+I AP HG + P + GEPL+VDCS+GSAG VP T
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKESGTILLDGVEALAKTVETESVFFHGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSTFVPQT 242
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Match: A0A2P4Y4F6_9STRA (Mediator of RNA polymerase II transcription subunit 17 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4F6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.690e-12 Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 1
Query: 340 VTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARALSDQTAKPGDGVPPEALPSLVTMKRSQLKGAAEQLRKRAKRLRETTEVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFT 765
V A+ EL+QL++ +DL R +F+ ++ R + + TA E L LV K +Q+K + L + L +T E + VF G+ + + W+I AP HG + P + GEPL+VDCS+GSAG VP T
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFL----------EEMRCIRENTAPKR-----EELEQLVEAKSAQVKESGTILLDGVEALAKTVETESVFFHGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSTFVPQT 242 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1235.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1235.1961.1 >prot_Ecto-sp13_S_contig1235.1961.1 ID=prot_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp XSAEKDENGVESPQKIALVPFVADPVHQYDGDGNASCARERSVQDDFQLAback to top mRNA from alignment at Ecto-sp13_S_contig1235:14216..17178+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1235.1961.1 ID=mRNA_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1235:14216..17178+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1235:14216..17178+ >mRNA_Ecto-sp13_S_contig1235.1961.1 ID=mRNA_Ecto-sp13_S_contig1235.1961.1|Name=mRNA_Ecto-sp13_S_contig1235.1961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1235:14216..17178+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |