mRNA_Ecto-sp13_S_contig8223.19578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8223.19578.1
Unique NamemRNA_Ecto-sp13_S_contig8223.19578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 679 bits (1753), Expect = 7.110e-243
Identity = 370/393 (94.15%), Postives = 374/393 (95.17%), Query Frame = 1
Query:    1 KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 1179
            +GDV LSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRP+RG GALRITDKG    YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVG+ YPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSG+AGGA     QRKPQPA      KREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGM EFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF
Sbjct:  146 QGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKG----YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAXXXXTQRKPQPAXXXXXXKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 534          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 1.210e-118
Identity = 189/241 (78.42%), Postives = 193/241 (80.08%), Query Frame = 1
Query:    1 KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEA--------------------------------------------YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLG 591
            +GDV LSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRP+RGGGALRITDKGQEEA                                            YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVG+ YPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSG+AGGA GGGAQRKPQPA GLG
Sbjct:  146 QGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGAQRKPQPAGGLG 386          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A6H5JS84_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS84_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 7.530e-90
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 1
Query:  685 MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 1179
            MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXX LAGRKKLMVVSPGI+ESLNAAIVENGWTSSF
Sbjct:    1 MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXX-LAGRKKLMVVSPGIMESLNAAIVENGWTSSF 164          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.250e-84
Identity = 166/376 (44.15%), Postives = 222/376 (59.04%), Query Frame = 1
Query:   13 ALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYC------------------------------------------KVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSS 1014
            AL  D+  P+ AKIE +M  +W+ VL+FLV SD  G    P+ V  FM+++GLM        L IT++G    YEFML++ HVQAWM V +LI     +    RD+LL+FLF LSYC                                          KV EDYPL ALT  Q  LA+DF++LGLL++RK  S RFY T IAVNL+FG++ + +        ++   Q A+     + +    + IIVETNFQV+AYT S LH AML+LFLELRA LPN ++G ITRES+R+AL TGIK  Q+L+FLKWHAHP V  R P++PENIADQ++LWERER R+++  G L+D+ +     F  +AE+A      LW++
Sbjct:  105 ALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRG----YEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTVSAALQPLEGHHNAQSVCAAPSLSCKPLPAAPSASVNRCSEKVCEDYPLLALTPAQAQLARDFIDLGLLYQRKPSSQRFYTTEIAVNLVFGAAAAEHP-------SRAVIQAAD--ASAQLDLAPRMTIIVETNFQVVAYTTSDLHVAMLTLFLELRARLPNMVIGVITRESVRQALVTGIKASQILNFLKWHAHPNVINRRPMIPENIADQIILWERERTRVKYDAGTLLDLPFEGVHDFDKVAEYAEELGACLWAA 465          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A662YIW7_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIW7_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.950e-76
Identity = 146/348 (41.95%), Postives = 208/348 (59.77%), Query Frame = 1
Query:    1 KGDVALSAD-RSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGAD------GGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 1020
            +G +AL+ D  +    A +ER   S+W  VL+F+VGS       PP  VV  +  + L++       AL ITD G    YEFMLK+ HVQ W+ +   I     T    ++++L FLFQ+SYC+ GE Y +  LT+TQR L  DF++ GLLF+++  S RFY TS+AVNLIFG S               G  A +K Q A+       +    + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  H HP +R+ TP++PENIADQ+ LWERER+R++  DG+L D  + +++ F  + E+A   + L WS P+
Sbjct:   87 RGRLALAKDPENTFAPADLERYARSRWDSVLHFMVGST--AVQEPPQSVVDILLRTRLLQSSGADSRALHITDTG----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLRQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRTNSDRFYTTSLAVNLIFGGSTGQKRSKISLTSSFAGVRAGQKSQIADPRHAPNADHGAELLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHVHPKMRQNTPIIPENIADQIYLWERERNRVQFLDGILFD-GFNTKEDFESVREYARDLKVLTWSDPI 427          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: F0W5B1_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Albugo TaxID=65356 RepID=F0W5B1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.620e-73
Identity = 136/324 (41.98%), Postives = 199/324 (61.42%), Query Frame = 1
Query:   49 KIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 1020
            ++ER   S W  VL+++VGS       PP  VV  +  + LM+      AL ITDKG    YEFMLK+ H+Q W+ +   I    RT    ++++L FLFQ+SYC+V   YP+  LT+TQ+ L  DF   GLL+++++ S RFY TS+A+NLIFG + + N           + Q A      +    + +  IVETNF+V AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +++  P+VPENIADQ+ LWE+ER+R++  +G+L D  + S++ F  + E+A  ++ L W+ P+
Sbjct:  145 ELERYARSHWDAVLHYMVGSTSV--PDPPQAVVDILLRTNLMQASVDQRALHITDKG----YEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQVNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDRFYTTSLAINLIFGGTTTSN---------YSETQVAR----PRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFD-GFNSKEEFEQVREYAQKQRFLTWTDPI 448          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.390e-73
Identity = 151/352 (42.90%), Postives = 202/352 (57.39%), Query Frame = 1
Query:    4 GDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGL----------------GGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLW 1008
            G   L A++  P V ++E     +W  VL+F+VGS     + PPA V+  +E + LM+P +    AL ITD G    YEFMLK+ H Q W+ V   +    R      DE+L FLFQ+SYC++ E Y +  LT+ Q+ L  D VELGLL++R AK+TRFY TS+AVNLIFG            G  +     ++GL                       D+S+ I+VETNF+V AYT+S LH AMLS+F+++ A LPN  VG +TRES+R ALS GI   Q+ DFL  HAHP +   +PV+PENIADQ+ LW+RER+R++   G LVDV+    DA    AE       LLW
Sbjct:  115 GRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGST--AVAAPPATVIGILEHTKLMQPSKSDSRALHITDTG----YEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGML---------GQTRANMTMSQGLDHITNYAADPSKSRLPSASPARADSSLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFEPGELVDVANEDFDAVVKHAEDMGV---LLW 447          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: H3GUR6_PHYRM (General transcription factor IIH subunit 4 n=3 Tax=Phytophthora TaxID=4783 RepID=H3GUR6_PHYRM)

HSP 1 Score: 245 bits (625), Expect = 5.220e-73
Identity = 140/332 (42.17%), Postives = 199/332 (59.94%), Query Frame = 1
Query:   46 AKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGAD------GGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 1020
            A +ER   ++W  VL+++VGS       PP  VV  +  + L++       AL ITD G    YEFMLK+ HVQ W+ +   I     T    ++++L FLFQ+SYC+ GE Y +  LT+TQR L  DF++ GLLF+++  S RFY TS+AVNLIFG S               G  A  K Q A+       +    + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +RR TPV+PENIADQ+ LWERER+R++  +G+L D  + S++ +  + ++A   + L W  P+
Sbjct:  142 ADLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLLQSSGADSRALHITDTG----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPTSDRFYTTSLAVNLIFGGSTGQKRSQVSLTSSFAGVRAGVKSQVADPRHAPTADHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNMAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNTPVIPENIADQIYLWERERNRVQFLEGILFD-GFNSKEDYESVRDYAEDLKVLTWMDPI 466          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A2D4C231_PYTIN (General transcription factor IIH subunit 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C231_PYTIN)

HSP 1 Score: 245 bits (625), Expect = 6.070e-73
Identity = 143/324 (44.14%), Postives = 189/324 (58.33%), Query Frame = 1
Query:   49 KIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 1020
            ++ER   S+W  VL+F+VGS     + PP  VV  +  + LMR      AL ITD G    YEFMLK+ HVQ W+ +   I    R     +D++L FL QLSYCK    YP+ ALT TQ+ L  DF   GLL++ +  ST FY TS+AVNL+FG   + +            P     L      +D  + +IVETN +V AYT S LH AMLS+F+++ A LPN  VG ITRES+R AL  GI  +Q+ DFL  HAHP +R R P++PENIADQ+ LWERER+R+   DG L D  + S+D F  +  FA +K  + WS  +
Sbjct:  158 ELERFSRSRWDAVLHFMVGST--AVAEPPQSVVDILLRTRLMRQSPETRALHITDTG----YEFMLKDVHVQLWIFLLEYIRTLDRAGALQQDDILRFLMQLSYCKTNAAYPVAALTPTQKLLLGDFTNFGLLYRHRLNSTHFYTTSLAVNLVFGGRQTRSXAHPXXXXXXXXPSKQLALEPSSEPEDR-LQVIVETNXKVYAYTTSTLHVAMLSVFVDIVARLPNLAVGFITRESLRSALIHGISAQQIYDFLVQHAHPRMRTRQPILPENIADQIYLWERERNRVRFVDGWLFD-GFTSKDEFEQVLAFARSKDCVTWSDAI 473          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A8K1CF22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF22_PYTOL)

HSP 1 Score: 243 bits (620), Expect = 2.800e-72
Identity = 138/333 (41.44%), Postives = 196/333 (58.86%), Query Frame = 1
Query:   40 TVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKP----QPAEGLGGGKREDD--TSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 1020
            T   +ER   S+W  VL+F+VGS       P  +VV  + ++ LM       AL ITD G    YEFMLK+ H+Q W+ +   I     T+   ++++L FLFQ+SYC+  + Y +  LT+TQ+ L  DF   GLL++++  S RFY TS+AVNL+FG S           G QR      +P   L G     D  T + ++VETNF++ AY+ S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +R+  PV+PENIADQ+ LWERER+R++  +G L D  + ++D F  +  +A     L WS P+
Sbjct:  151 TAMDLERYARSRWDSVLHFMVGST--AVQEPHRQVVDILVDTKLMHQNPETRALHITDTG----YEFMLKDIHMQMWIFMLEYIRTLDNTKTLRQEDILQFLFQISYCQTNQYYAVADLTETQQLLLADFTNFGLLYRQRLNSDRFYTTSLAVNLVFGGSR----------GQQRSSLAVMRPGRQLDGLSSSPDLGTELQVVVETNFKIYAYSTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPRMRKNNPVIPENIADQIYLWERERNRVQFMEGALFD-GFNTKDEFEQVLTYARDLNVLTWSDPI 466          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHY7_ECTSI7.110e-24394.15General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5KJZ4_9PHAE1.210e-11878.42General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5JS84_9PHAE7.530e-9098.79General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A836C856_9STRA1.250e-8444.15General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A662YIW7_9STRA3.950e-7641.95General transcription factor IIH subunit 4 n=2 Tax... [more]
F0W5B1_9STRA1.620e-7341.98General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A024TBA0_9STRA4.390e-7342.90General transcription factor IIH subunit 4 n=2 Tax... [more]
H3GUR6_PHYRM5.220e-7342.17General transcription factor IIH subunit 4 n=3 Tax... [more]
A0A2D4C231_PYTIN6.070e-7344.14General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A8K1CF22_PYTOL2.800e-7241.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8223contigEcto-sp13_S_contig8223:474..4842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score683.7
Seed ortholog evalue5e-194
Seed eggNOG ortholog2880.D7FHY7
Preferred nameGTF2H4
Model size1182
KEGG rclassRC00055,RC00523
KEGG koko:K01873,ko:K03144
KEGG ReactionR03665
KEGG Pathwayko00970,ko03022,ko03420,ko05203,map00970,map03022,map03420,map05203
KEGG ModuleM00290,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001671,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030234,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032774,GO:0032781,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043462,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051276,GO:0051336,GO:0051345,GO:0051716,GO:0055029,GO:0060255,GO:0060589,GO:0060590,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070816,GO:0070911,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Exons7
EggNOG free text desc.Helicase conserved C-terminal domain
EggNOG OGsCOG5144@1,KOG3471@2759
Ec32 ortholog descriptionTranscription factor TFIIH subunit p52/Tfb2
Ec32 orthologEc-12_006390.1
EC6.1.1.9
Cds size1182
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8223.19578.1prot_Ecto-sp13_S_contig8223.19578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8223 474..4842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.3274207-CDS-Ecto-sp13_S_contig8223:473..5551681464093.3274207-CDS-Ecto-sp13_S_contig8223:473..555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 474..555 +
1681464093.3430712-CDS-Ecto-sp13_S_contig8223:840..9881681464093.3430712-CDS-Ecto-sp13_S_contig8223:840..988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 841..988 +
1681464093.352565-CDS-Ecto-sp13_S_contig8223:1348..14841681464093.352565-CDS-Ecto-sp13_S_contig8223:1348..1484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 1349..1484 +
1681464093.3659258-CDS-Ecto-sp13_S_contig8223:1984..22091681464093.3659258-CDS-Ecto-sp13_S_contig8223:1984..2209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 1985..2209 +
1681464093.3765533-CDS-Ecto-sp13_S_contig8223:3132..31891681464093.3765533-CDS-Ecto-sp13_S_contig8223:3132..3189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 3133..3189 +
1681464093.3857167-CDS-Ecto-sp13_S_contig8223:3676..39041681464093.3857167-CDS-Ecto-sp13_S_contig8223:3676..3904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 3677..3904 +
1681464093.3984156-CDS-Ecto-sp13_S_contig8223:4536..48421681464093.3984156-CDS-Ecto-sp13_S_contig8223:4536..4842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8223 4537..4842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8223.19578.1

>prot_Ecto-sp13_S_contig8223.19578.1 ID=prot_Ecto-sp13_S_contig8223.19578.1|Name=mRNA_Ecto-sp13_S_contig8223.19578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVK
FMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGY
GRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLF
KRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGK
REDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITR
ESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERER
DRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDEEGGGG
GGGSGSGSSGGGLAGRKKLMVVSPGIVESLNAAIVENGWTSSF*
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mRNA from alignment at Ecto-sp13_S_contig8223:474..4842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8223.19578.1 ID=mRNA_Ecto-sp13_S_contig8223.19578.1|Name=mRNA_Ecto-sp13_S_contig8223.19578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8223:474..4842+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGGACGTCGCTCTTTCGGCGGATAGGAGCCCGCCGACAGTAGCTAA GATCGAGCGGCAGATGCACTCGCAGTGGCAAGGTCAGTCGCGGCCAGAAC AATGACCAACAGAGTCATGAGTTCGGTATGTGATTGGGTGTTACCGCCAT TTTTGTTCACAAACACCCGCTGTATCATCATATGGTGCCTATTTATCGGT CTCCAAGTATTCCGGAGCCTTTTCTTCACAAACGAGCGAAAAGTCTCCTG CCTGAGTAAGAAGAGGTAGAACCGACGCAACGAAATTTACAACTGTGATT GCTTTCGTACGTCCTGTTTTCGTGCCTACTTTTTCCTACTTTTTTCCCCG CACGGGGGGGCCTTCAGATGTACTCTACTTCCTTGTAGGGTCTGACGAGG AGGGGAGGAGCACACCGCCTGCCAGGGTCGTCAAGTTCATGGAAGAAAGC GGCCTGATGAGACCCATCAGGGGGGGGGGTGCTCTCCGCATCACCGACAA AGGGCAAGAAGAGGCGTGGAATTATTAGCGTGGGGTGCGGGGGGGTAGCT TCAAGTGTTTGCGGGAGGCTGCGAGGGTTGGGGGGGGATTGATCTAGGAG TCATCGGCGCTGGAGGGTGCTGTGTACCCTCGTCGAACTGGTTACCTCAA CGTGTCGATGCTAAGGCACTGGCCTGTCTGTTCCAGGTATCCCTGTTTGA GGGCTTGAGAATCTAAGGCACTATTTGGAGGGGGTGGGACAGGATTTTCT GCCTTGTCATTTCACCTTACGTGGGACTGGTCTCATCACTCTTGCCACGA CTACCAGCCAAAAACAACAACAGCAACATCATCACCATCCATGCCCCGTG TTTTTTCCCTGACACCCAACGAAAGGTACGAGTTCATGCTCAAGGAGGCA CACGTGCAGGCCTGGATGGTGGTTCACGCTCTGATCAACGGCTACGGCAG GACTCAGCCCGGCTGCCGCGACGAGCTGCTCGCCTTCCTCTTCCAGCTAA GCTACTGCAAGGTAGGGTAACAAGTACCATCGCATGTCAGAAAAGCTGTA TGCGGTGGTGGTGCGGTAGCGGTAACTAACTTGATGCTTCCCCCGGTTTT CCGGCGAGACGACCGCGATGCGTCTCTACCCATGTCAGCACGGTGTTGGT TTTGCGGAAAGGTGCACCATGGTACACGATGTATGCTGTGTCATTTCGCC TTCACGTTGAGCACAGAACATATTTTCTTTTTTTTTCCCTCGTCTGCTCT TCCGCCTCAGCTTGGCATAAAAGGTATAGCACGGTTTGGTCCAGAAAACC CATTATTTTGCATGTCACAATTGTACAGCGGCTGGTACACCCGGCGTATC CATCGACATCGTTGTCCGGAGGGCTGCGCTGCCGTATCAACCATACCTTG CCGTTCTTCACCGAACCCCTACTGTACCTGTAAAACCCCGTAGCTTCTGT CACTTGTAGTACCCTACGCTGCCGACGACACCTCTGTTGTGTGTTTCCCG CGCGCTGGTAGGTGGGAGAAGACTACCCGCTGGGAGCGCTCACCCAGACG CAGCGCGATCTGGCCCAGGACTTCGTGGAGCTCGGGCTCCTCTTCAAGCG GAAGGCCAAGTCCACCCGGTTCTACCCCACCTCCATCGCCGTCAATCTCA TCTTCGGCTCCTCTCCCTCCGGGAACGCGGGGGGGGCGGATGGTGGTGGC GCACAGCGGAAGCCGCAGCCTGCGGAAGGGCTCGGGGTGAGGTGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGTTACTCGGTTGCGTGCTTGCCTT GCCCGTTGACTGTTGGGGCGCACTCATTTATGGCTTGCTTGTCCTGTCTG GTGGTCGTATTTTGTCGGTGCCTCTCGAGAGTCAGCTATGACAACACTAT TCCCACACCTTGTAGAGACATGTCCAATGCTCGCGAGGGTTAGTTTCCCA CGTTTATTCTGTGTGTTTGCGTTCCTTGTTCTTGCTGCGCCATGTATGTT CTCCGTCTTCAGCCACCTTCTGGTGTCTCGTGCGGTAGTGTCGATTGGTT GCGGGCCGGAGGGGGGGAACAGAGAAAAGGGGCAAAGGGAGTGTAGTTGC GGTTCCACTCGTTTCATCCTGGGGCGTGGCCATCGGCTTCGTCGTTGGTG CAATTCCCACCCAAACCCCACCCCCATGGTATTCTACGCAGGCGAAACTG TAAGTTTGATTGTCGCCTTCGTCTGTCTGATTTTTCGAGTGTCCTTGACA AGTAAAAGACAATTTTGACAATCGTGGTTGGCAATGTCTGATCGCATTGT AAGATTAATTGCCAGCGTTGTCCGAATCTGCAAGAGGTACGCAAGGTGAC TTGGGCATCATTTTCGCGTTATCTGCATAAAAAGAAGTGTCGTTTCGCCG CCGCCGTGCCCTTGGCGCTTGTTGTTTGTGCGTGACTTTCGCTCTCTCTG TTCCCCGTCCGTCTCTTTTCCGCTGAACGCTCCATGTTTGGTACACCTCT GGCATGGACGGTTTCACGCTCCTGCCACTGATGCCTGTGACTGTGCACCG CTGGCGCGGTGGCGTTTCCATGTCGGTGGCGGCCGTGGATGGCGATGGTG CTTGGCGCTTGGAAAAACCGCAACATTTGTTTTGTATACACTCGGCGGCG ATTGTTTAGGGCGGAAAGAGGGAGGATGACACGAGCATCCACATCATCGT CGAAACCAATTTTCAGGTGAGAGAGCGTCGGCCAGGTCTGTCCCCTCCCT CCCTCCCCCGCCTTGTTCGAAAGGAGCGTTCGGCCTTTCTTCTGTGGACG TGACGCGCTCCCTGGGTTTTGCTTTTTCTCGGCATGGGTGTTTCTTAGGA CGTGTCGGGGAGAAACGCGCTAAGCCAGGCACGACAACAATGAGGACGGA GAATCTCTTGATTGAGACAAAACTGCTGTAGTCCCCTCTCTAATTTTATT TGTTCTTGGCAACGAGTAACGTGCAAACTCGCAGCTCCTCTCCGTCCATT ATCGCCCCCTATTCGAAAAAACGTGTTGGGCAGTTCTTGCTGGCTTGTTA TTCTCTCTTTTTAGTGCGGGGACCAAGCAATGCCCAAACGATCAACCTCT CCCCCATACCCCCCTCCGCTCTTTCGAGGACACGTGGCCAATGGCTAAAC AACTAAGGGATGCAAAACATGGGTACCCCCCCATACCTCCTTTACCCTGG AAGGTGATCGCCTACACGCGGTCGAAGCTCCACTTCGCCATGCTCAGCCT CTTCCTCGAGCTGCGCGCCCTGCTGCCAAACGCCATTGTGGGAGCCATCA CGAGAGAGAGCATGCGGAAGGCCCTGTCGACCGGCATTAAGGGCCGCCAG GTGCTCGACTTCCTCAAGTGGCACGCCCACCCGGTCGTGAGGAGACGGAC GCCCGTCGTGCCGGAGAACATCGCCGACCAGGTGCTCGCGCGCGTGCGTA TGTGTGTGTGTGTGTGCCTCATTGAAGTACAACCGTCCCCGCTTTTGAAA GGCACCAAACTTTCAAGACAAGCTCCGCTTTAAGAGCACTGACTTTTTCC AGGTGTAAGGTGCCCCGCATAATACCTTACGAGTGTGTGTAAACTTTCAG GAGATTTCCCCGCTTGAAGGACAATTTTGTTTTAGGAAAAACGCGAGTGT CGTTGAAGCAGAGGCAACTGGTGTAGCATCAACCGCGCTAACCTCCTAAC CAAAGGCTTCAGTGTCATGGCACGAGGAAACAGTAAGAACAGACTTTTAT GATCCGTGGGCGTTCTTCATATCGGGTGACTGAGGAGGAGATTTGGGCGA GAGCGTCCAGCCTCAGCCTAACCCGAGTTCTCTGTCCATCTCCGTCTGTT GATTGGTGGGCGGGTGGTTGGTTGCTTCGTCGTTACAGGTAGGATAAATT GTCTCGGAACCTGGTGGAGTCTTCATTCACGAACCAAAAGCAACCACGAT ATCCCACAACCAAGAGGCAAAAGAAAGGCGATCCCAGAACGTTGCCGTTC AGCGCGATGGTCACCTGAATCGCCTCCTCATGCGCACAAAAAAAACTTGA AAAAAATACTCAGGTTCTGTTGTGGGAACGGGAGCGAGATCGCATGGAAC ACCGCGACGGCGTTCTCGTGGACGTTTCATACGCAAGCCGCGACGCTTTC CGAGGTATGGCAGAGTTCGCCAACGCGAAGCAGGGCCTGCTGTGGAGCAG CCCGCTAGGGGGGGAGGACGAAGAGGGAGGCGGCGGTGGCGGCGGCAGTG GTAGCGGCAGCAGCGGTGGCGGGTTGGCCGGCCGGAAAAAACTCATGGTG GTGTCCCCGGGCATCGTGGAGAGTTTGAACGCAGCCATCGTCGAGAACGG ATGGACGAGCTCGTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8223:474..4842+

>mRNA_Ecto-sp13_S_contig8223.19578.1 ID=mRNA_Ecto-sp13_S_contig8223.19578.1|Name=mRNA_Ecto-sp13_S_contig8223.19578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8223:474..4842+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGGACGTCGCTCTTTCGGCGGATAGGAGCCCGCCGACAGTAGCTAA
GATCGAGCGGCAGATGCACTCGCAGTGGCAAGATGTACTCTACTTCCTTG
TAGGGTCTGACGAGGAGGGGAGGAGCACACCGCCTGCCAGGGTCGTCAAG
TTCATGGAAGAAAGCGGCCTGATGAGACCCATCAGGGGGGGGGGTGCTCT
CCGCATCACCGACAAAGGGCAAGAAGAGGCGTACGAGTTCATGCTCAAGG
AGGCACACGTGCAGGCCTGGATGGTGGTTCACGCTCTGATCAACGGCTAC
GGCAGGACTCAGCCCGGCTGCCGCGACGAGCTGCTCGCCTTCCTCTTCCA
GCTAAGCTACTGCAAGGTGGGAGAAGACTACCCGCTGGGAGCGCTCACCC
AGACGCAGCGCGATCTGGCCCAGGACTTCGTGGAGCTCGGGCTCCTCTTC
AAGCGGAAGGCCAAGTCCACCCGGTTCTACCCCACCTCCATCGCCGTCAA
TCTCATCTTCGGCTCCTCTCCCTCCGGGAACGCGGGGGGGGCGGATGGTG
GTGGCGCACAGCGGAAGCCGCAGCCTGCGGAAGGGCTCGGGGGCGGAAAG
AGGGAGGATGACACGAGCATCCACATCATCGTCGAAACCAATTTTCAGGT
GATCGCCTACACGCGGTCGAAGCTCCACTTCGCCATGCTCAGCCTCTTCC
TCGAGCTGCGCGCCCTGCTGCCAAACGCCATTGTGGGAGCCATCACGAGA
GAGAGCATGCGGAAGGCCCTGTCGACCGGCATTAAGGGCCGCCAGGTGCT
CGACTTCCTCAAGTGGCACGCCCACCCGGTCGTGAGGAGACGGACGCCCG
TCGTGCCGGAGAACATCGCCGACCAGGTTCTGTTGTGGGAACGGGAGCGA
GATCGCATGGAACACCGCGACGGCGTTCTCGTGGACGTTTCATACGCAAG
CCGCGACGCTTTCCGAGGTATGGCAGAGTTCGCCAACGCGAAGCAGGGCC
TGCTGTGGAGCAGCCCGCTAGGGGGGGAGGACGAAGAGGGAGGCGGCGGT
GGCGGCGGCAGTGGTAGCGGCAGCAGCGGTGGCGGGTTGGCCGGCCGGAA
AAAACTCATGGTGGTGTCCCCGGGCATCGTGGAGAGTTTGAACGCAGCCA
TCGTCGAGAACGGATGGACGAGCTCGTTTTGA
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