prot_Ecto-sp13_S_contig8223.19578.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8223.19578.1
Unique Nameprot_Ecto-sp13_S_contig8223.19578.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length394
Homology
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 679 bits (1753), Expect = 7.110e-243
Identity = 370/393 (94.15%), Postives = 374/393 (95.17%), Query Frame = 0
Query:    1 KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 393
            +GDV LSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRP+RG GALRITDKG    YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVG+ YPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSG+AGGA     QRKPQPA      KREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGM EFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF
Sbjct:  146 QGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKG----YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAXXXXTQRKPQPAXXXXXXKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 534          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 1.210e-118
Identity = 189/241 (78.42%), Postives = 193/241 (80.08%), Query Frame = 0
Query:    1 KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEA--------------------------------------------YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLG 197
            +GDV LSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRP+RGGGALRITDKGQEEA                                            YEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVG+ YPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSG+AGGA GGGAQRKPQPA GLG
Sbjct:  146 QGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGAQRKPQPAGGLG 386          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A6H5JS84_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS84_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 7.530e-90
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0
Query:  229 MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 393
            MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXX LAGRKKLMVVSPGI+ESLNAAIVENGWTSSF
Sbjct:    1 MLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXX-LAGRKKLMVVSPGIMESLNAAIVENGWTSSF 164          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.250e-84
Identity = 166/376 (44.15%), Postives = 222/376 (59.04%), Query Frame = 0
Query:    5 ALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYC------------------------------------------KVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSS 338
            AL  D+  P+ AKIE +M  +W+ VL+FLV SD  G    P+ V  FM+++GLM        L IT++G    YEFML++ HVQAWM V +LI     +    RD+LL+FLF LSYC                                          KV EDYPL ALT  Q  LA+DF++LGLL++RK  S RFY T IAVNL+FG++ + +        ++   Q A+     + +    + IIVETNFQV+AYT S LH AML+LFLELRA LPN ++G ITRES+R+AL TGIK  Q+L+FLKWHAHP V  R P++PENIADQ++LWERER R+++  G L+D+ +     F  +AE+A      LW++
Sbjct:  105 ALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRG----YEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTVSAALQPLEGHHNAQSVCAAPSLSCKPLPAAPSASVNRCSEKVCEDYPLLALTPAQAQLARDFIDLGLLYQRKPSSQRFYTTEIAVNLVFGAAAAEHP-------SRAVIQAAD--ASAQLDLAPRMTIIVETNFQVVAYTTSDLHVAMLTLFLELRARLPNMVIGVITRESVRQALVTGIKASQILNFLKWHAHPNVINRRPMIPENIADQIILWERERTRVKYDAGTLLDLPFEGVHDFDKVAEYAEELGACLWAA 465          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A662YIW7_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIW7_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.950e-76
Identity = 146/348 (41.95%), Postives = 208/348 (59.77%), Query Frame = 0
Query:    1 KGDVALSAD-RSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGAD------GGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 340
            +G +AL+ D  +    A +ER   S+W  VL+F+VGS       PP  VV  +  + L++       AL ITD G    YEFMLK+ HVQ W+ +   I     T    ++++L FLFQ+SYC+ GE Y +  LT+TQR L  DF++ GLLF+++  S RFY TS+AVNLIFG S               G  A +K Q A+       +    + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  H HP +R+ TP++PENIADQ+ LWERER+R++  DG+L D  + +++ F  + E+A   + L WS P+
Sbjct:   87 RGRLALAKDPENTFAPADLERYARSRWDSVLHFMVGST--AVQEPPQSVVDILLRTRLLQSSGADSRALHITDTG----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLRQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRTNSDRFYTTSLAVNLIFGGSTGQKRSKISLTSSFAGVRAGQKSQIADPRHAPNADHGAELLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHVHPKMRQNTPIIPENIADQIYLWERERNRVQFLDGILFD-GFNTKEDFESVREYARDLKVLTWSDPI 427          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: F0W5B1_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Albugo TaxID=65356 RepID=F0W5B1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.620e-73
Identity = 136/324 (41.98%), Postives = 199/324 (61.42%), Query Frame = 0
Query:   17 KIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 340
            ++ER   S W  VL+++VGS       PP  VV  +  + LM+      AL ITDKG    YEFMLK+ H+Q W+ +   I    RT    ++++L FLFQ+SYC+V   YP+  LT+TQ+ L  DF   GLL+++++ S RFY TS+A+NLIFG + + N           + Q A      +    + +  IVETNF+V AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +++  P+VPENIADQ+ LWE+ER+R++  +G+L D  + S++ F  + E+A  ++ L W+ P+
Sbjct:  145 ELERYARSHWDAVLHYMVGSTSV--PDPPQAVVDILLRTNLMQASVDQRALHITDKG----YEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQISYCQVNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDRFYTTSLAINLIFGGTTTSN---------YSETQVAR----PRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFD-GFNSKEEFEQVREYAQKQRFLTWTDPI 448          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.390e-73
Identity = 151/352 (42.90%), Postives = 202/352 (57.39%), Query Frame = 0
Query:    2 GDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGL----------------GGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLW 336
            G   L A++  P V ++E     +W  VL+F+VGS     + PPA V+  +E + LM+P +    AL ITD G    YEFMLK+ H Q W+ V   +    R      DE+L FLFQ+SYC++ E Y +  LT+ Q+ L  D VELGLL++R AK+TRFY TS+AVNLIFG            G  +     ++GL                       D+S+ I+VETNF+V AYT+S LH AMLS+F+++ A LPN  VG +TRES+R ALS GI   Q+ DFL  HAHP +   +PV+PENIADQ+ LW+RER+R++   G LVDV+    DA    AE       LLW
Sbjct:  115 GRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGST--AVAAPPATVIGILEHTKLMQPSKSDSRALHITDTG----YEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGML---------GQTRANMTMSQGLDHITNYAADPSKSRLPSASPARADSSLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFEPGELVDVANEDFDAVVKHAEDMGV---LLW 447          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: H3GUR6_PHYRM (General transcription factor IIH subunit 4 n=3 Tax=Phytophthora TaxID=4783 RepID=H3GUR6_PHYRM)

HSP 1 Score: 245 bits (625), Expect = 5.220e-73
Identity = 140/332 (42.17%), Postives = 199/332 (59.94%), Query Frame = 0
Query:   16 AKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGG-ALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGAD------GGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 340
            A +ER   ++W  VL+++VGS       PP  VV  +  + L++       AL ITD G    YEFMLK+ HVQ W+ +   I     T    ++++L FLFQ+SYC+ GE Y +  LT+TQR L  DF++ GLLF+++  S RFY TS+AVNLIFG S               G  A  K Q A+       +    + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +RR TPV+PENIADQ+ LWERER+R++  +G+L D  + S++ +  + ++A   + L W  P+
Sbjct:  142 ADLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLLQSSGADSRALHITDTG----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPTSDRFYTTSLAVNLIFGGSTGQKRSQVSLTSSFAGVRAGVKSQVADPRHAPTADHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNMAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNTPVIPENIADQIYLWERERNRVQFLEGILFD-GFNSKEDYESVRDYAEDLKVLTWMDPI 466          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A2D4C231_PYTIN (General transcription factor IIH subunit 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C231_PYTIN)

HSP 1 Score: 245 bits (625), Expect = 6.070e-73
Identity = 143/324 (44.14%), Postives = 189/324 (58.33%), Query Frame = 0
Query:   17 KIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 340
            ++ER   S+W  VL+F+VGS     + PP  VV  +  + LMR      AL ITD G    YEFMLK+ HVQ W+ +   I    R     +D++L FL QLSYCK    YP+ ALT TQ+ L  DF   GLL++ +  ST FY TS+AVNL+FG   + +            P     L      +D  + +IVETN +V AYT S LH AMLS+F+++ A LPN  VG ITRES+R AL  GI  +Q+ DFL  HAHP +R R P++PENIADQ+ LWERER+R+   DG L D  + S+D F  +  FA +K  + WS  +
Sbjct:  158 ELERFSRSRWDAVLHFMVGST--AVAEPPQSVVDILLRTRLMRQSPETRALHITDTG----YEFMLKDVHVQLWIFLLEYIRTLDRAGALQQDDILRFLMQLSYCKTNAAYPVAALTPTQKLLLGDFTNFGLLYRHRLNSTHFYTTSLAVNLVFGGRQTRSXAHPXXXXXXXXPSKQLALEPSSEPEDR-LQVIVETNXKVYAYTTSTLHVAMLSVFVDIVARLPNLAVGFITRESLRSALIHGISAQQIYDFLVQHAHPRMRTRQPILPENIADQIYLWERERNRVRFVDGWLFD-GFTSKDEFEQVLAFARSKDCVTWSDAI 473          
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Match: A0A8K1CF22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF22_PYTOL)

HSP 1 Score: 243 bits (620), Expect = 2.800e-72
Identity = 138/333 (41.44%), Postives = 196/333 (58.86%), Query Frame = 0
Query:   14 TVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKP----QPAEGLGGGKREDD--TSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPL 340
            T   +ER   S+W  VL+F+VGS       P  +VV  + ++ LM       AL ITD G    YEFMLK+ H+Q W+ +   I     T+   ++++L FLFQ+SYC+  + Y +  LT+TQ+ L  DF   GLL++++  S RFY TS+AVNL+FG S           G QR      +P   L G     D  T + ++VETNF++ AY+ S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +R+  PV+PENIADQ+ LWERER+R++  +G L D  + ++D F  +  +A     L WS P+
Sbjct:  151 TAMDLERYARSRWDSVLHFMVGST--AVQEPHRQVVDILVDTKLMHQNPETRALHITDTG----YEFMLKDIHMQMWIFMLEYIRTLDNTKTLRQEDILQFLFQISYCQTNQYYAVADLTETQQLLLADFTNFGLLYRQRLNSDRFYTTSLAVNLVFGGSR----------GQQRSSLAVMRPGRQLDGLSSSPDLGTELQVVVETNFKIYAYSTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPRMRKNNPVIPENIADQIYLWERERNRVQFMEGALFD-GFNTKDEFEQVLTYARDLNVLTWSDPI 466          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8223.19578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHY7_ECTSI7.110e-24394.15General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5KJZ4_9PHAE1.210e-11878.42General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5JS84_9PHAE7.530e-9098.79General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A836C856_9STRA1.250e-8444.15General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A662YIW7_9STRA3.950e-7641.95General transcription factor IIH subunit 4 n=2 Tax... [more]
F0W5B1_9STRA1.620e-7341.98General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A024TBA0_9STRA4.390e-7342.90General transcription factor IIH subunit 4 n=2 Tax... [more]
H3GUR6_PHYRM5.220e-7342.17General transcription factor IIH subunit 4 n=3 Tax... [more]
A0A2D4C231_PYTIN6.070e-7344.14General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A8K1CF22_PYTOL2.800e-7241.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.2610coord: 286..341
e-value: 1.4E-8
score: 36.7
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 9..276
e-value: 1.4E-71
score: 241.4
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 11..338
IPR040662Transcription factor Tfb2, C-terminal domainPFAMPF18307Tfb2_Ccoord: 291..339
e-value: 2.3E-9
score: 37.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8223contigEcto-sp13_S_contig8223:474..4842 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8223.19578.1mRNA_Ecto-sp13_S_contig8223.19578.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8223 474..4842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8223.19578.1 ID=prot_Ecto-sp13_S_contig8223.19578.1|Name=mRNA_Ecto-sp13_S_contig8223.19578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
KGDVALSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVK
FMEESGLMRPIRGGGALRITDKGQEEAYEFMLKEAHVQAWMVVHALINGY
GRTQPGCRDELLAFLFQLSYCKVGEDYPLGALTQTQRDLAQDFVELGLLF
KRKAKSTRFYPTSIAVNLIFGSSPSGNAGGADGGGAQRKPQPAEGLGGGK
REDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITR
ESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERER
DRMEHRDGVLVDVSYASRDAFRGMAEFANAKQGLLWSSPLGGEDEEGGGG
GGGSGSGSSGGGLAGRKKLMVVSPGIVESLNAAIVENGWTSSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
IPR040662Tfb2_C