mRNA_Ecto-sp13_S_contig8214.19571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8214.19571.1
Unique NamemRNA_Ecto-sp13_S_contig8214.19571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: D7G329_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G329_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.070e-81
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 1 
Query:   31 LHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPPDLADDECAHIRDEVD 402
            LHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQG RRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCIS+GEKPVVQPPDLAD+ECAHIRDEVD
Sbjct:   24 LHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGGRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISSGEKPVVQPPDLADEECAHIRDEVD 147
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: D7FZ74_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ74_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 6.120e-79
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:   19 PPSRLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPPDLADDECAHIRDEVD 402
            P  RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCIS+GEKPVVQPPDLAD+ECAHIRDEVD
Sbjct:  394 PRRRLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISSGEKPVVQPPDLADEECAHIRDEVD 521
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: V4AL80_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AL80_LOTGI)

HSP 1 Score: 128 bits (321), Expect = 1.110e-31
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYR-LCISNGEKPVVQPP 357
            R+HITLELPWSAD+AIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+ +LD + + + + NGE P+V PP
Sbjct:  773 RVHITLELPWSADRAIQQFGRTHRSNQIHAPEYIFLISELAGERRFASTVAKRLESLGALTHGDRRATET----RDLSRFNIDNKYGRAALDSVMKSVLVLNGELPLVPPP 879
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: G0MWK5_CAEBE (CBN-LET-765 protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MWK5_CAEBE)

HSP 1 Score: 128 bits (321), Expect = 1.130e-31
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+++LD + +  I  G  P++ PP
Sbjct: 1452 RVHITLELPWSADKAIQQFGRTHRSNQVSGPEYVFLISELAGEKRFASIVAKRLESLGALTHGDRRATET----RDLSQFNMDNKYGRVALDTLLKTVIGQGGPPLIDPP 1557
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: A0A158PNI9_ANISI (Protein strawberry notch homolog 1 (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A158PNI9_ANISI)

HSP 1 Score: 126 bits (317), Expect = 3.920e-31
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+ +       + FNVD +YG+ +LD + R  I +   P++QPP
Sbjct: 1416 RVHITLELPWSADKAIQQFGRTHRSNQVNAPEYIFLISELAGEKRFASIVAKRLESLGALTHGDRRATES----RDLSQFNVDTRYGRSALDILLRSVIGSMNPPLIQPP 1521
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: A0A1I7UP37_9PELO (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7UP37_9PELO)

HSP 1 Score: 126 bits (317), Expect = 3.930e-31
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+++LD + +  I     P+++PP
Sbjct: 1609 RVHITLELPWSADKAIQQFGRTHRSNQVSGPEYVFLISELAGEKRFASIVAKRLESLGALTHGDRRATET----RDLSQFNMDNKYGRVALDTLLKTVIGQAGAPLIEPP 1714
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: A0A2H2I3Z3_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I3Z3_CAEJA)

HSP 1 Score: 126 bits (316), Expect = 5.160e-31
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+++LD + +  I     P+++PP
Sbjct:  590 RVHITLELPWSADKAIQQFGRTHRSNQVSGPEYVFLISELAGEKRFASVVAKRLESLGALTHGDRRATET----RDLSQFNMDNKYGRVALDTLLKTVIGQTNPPLLEPP 695
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: UPI0019D5E0A7 (protein FORGETTER 1-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5E0A7)

HSP 1 Score: 126 bits (316), Expect = 5.250e-31
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPPDLADDECA 381
            R+HITLELPWSAD+AIQQ GRTHR+NQ   P Y+L+ + + GE RF++ VAKRLESLGALTQGDRRA       L  +AFN D+ YGK +L  +YR  +     PVV PP+ +DDE +
Sbjct:  876 RVHITLELPWSADRAIQQFGRTHRSNQTSAPQYRLLFTNLGGEKRFASIVAKRLESLGALTQGDRRAG------LSLSAFNYDSNYGKKALTMMYRGIMEQDSFPVV-PPECSDDEAS 986
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: A8XLN5_CAEBR (Protein CBR-LET-765 n=2 Tax=Caenorhabditis TaxID=6237 RepID=A8XLN5_CAEBR)

HSP 1 Score: 126 bits (316), Expect = 5.340e-31
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+++LD + +  I     P+++PP
Sbjct: 1394 RVHITLELPWSADKAIQQFGRTHRSNQVSGPEYVFLISELAGEKRFASIVAKRLESLGALTHGDRRATET----RDLSQFNMDNKYGRVALDTLLKTVIGQAGVPLIEPP 1499
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BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Match: SBNO_CAEEL (Protein strawberry notch homolog n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=SBNO_CAEEL)

HSP 1 Score: 125 bits (315), Expect = 7.290e-31
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   28 RLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVCGETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSLDHIYRLCISNGEKPVVQPP 357
            R+HITLELPWSADKAIQQ GRTHR+NQ   P Y  ++SE+ GE RF++ VAKRLESLGALT GDRRA+         + FN+DN+YG+++LD + +  I     P++ PP
Sbjct: 1441 RVHITLELPWSADKAIQQFGRTHRSNQVSGPEYVFLISELAGEKRFASIVAKRLESLGALTHGDRRATET----RDLSQFNMDNKYGRVALDTLLKTVIGQAGTPLIDPP 1546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8214.19571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G329_ECTSI1.070e-8197.58Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
D7FZ74_ECTSI6.120e-7996.88Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
V4AL80_LOTGI1.110e-3156.76Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
G0MWK5_CAEBE1.130e-3156.36CBN-LET-765 protein n=1 Tax=Caenorhabditis brenner... [more]
A0A158PNI9_ANISI3.920e-3157.27Protein strawberry notch homolog 1 (inferred by or... [more]
A0A1I7UP37_9PELO3.930e-3155.45Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A2H2I3Z3_CAEJA5.160e-3155.45Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]
UPI0019D5E0A75.250e-3156.78protein FORGETTER 1-like n=1 Tax=Panicum virgatum ... [more]
A8XLN5_CAEBR5.340e-3155.45Protein CBR-LET-765 n=2 Tax=Caenorhabditis TaxID=6... [more]
SBNO_CAEEL7.290e-3155.45Protein strawberry notch homolog n=1 Tax=Caenorhab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8214contigEcto-sp13_S_contig8214:4941..6995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score251.5
Seed ortholog evalue2.2e-64
Seed eggNOG ortholog2880.D7FZ74
Model size407
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
Ec32 ortholog descriptionStrawberry notch, helicase C domain
Ec32 orthologEc-00_006260.1
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.952608-CDS-Ecto-sp13_S_contig8214:4940..50641681464092.952608-CDS-Ecto-sp13_S_contig8214:4940..5064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8214 4941..5064 -
1681464092.966661-CDS-Ecto-sp13_S_contig8214:5453..55211681464092.966661-CDS-Ecto-sp13_S_contig8214:5453..5521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8214 5454..5521 -
1681464092.9775038-CDS-Ecto-sp13_S_contig8214:6201..63061681464092.9775038-CDS-Ecto-sp13_S_contig8214:6201..6306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8214 6202..6306 -
1681464092.9889777-CDS-Ecto-sp13_S_contig8214:6887..69951681464092.9889777-CDS-Ecto-sp13_S_contig8214:6887..6995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8214 6888..6995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8214.19571.1prot_Ecto-sp13_S_contig8214.19571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8214 4941..6995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8214.19571.1

>prot_Ecto-sp13_S_contig8214.19571.1 ID=prot_Ecto-sp13_S_contig8214.19571.1|Name=mRNA_Ecto-sp13_S_contig8214.19571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
SVLAPPPPSRLHITLELPWSADKAIQQLGRTHRANQFQPPIYQLIVSEVC
GETRFSAAVAKRLESLGALTQGDRRASHAGAGELGFTAFNVDNQYGKMSL
DHIYRLCISNGEKPVVQPPDLADDECAHIRDEVDD
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mRNA from alignment at Ecto-sp13_S_contig8214:4941..6995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8214.19571.1 ID=mRNA_Ecto-sp13_S_contig8214.19571.1|Name=mRNA_Ecto-sp13_S_contig8214.19571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2055bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8214:4941..6995- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTGTTGGCTCCCCCCCCCCCGTCCAGGCTGCACATCACGTTGGAACT
CCCTTGGTCCGCAGACAAAGCCATCCAGCAGCTGGGCAGAACCCATAGGG
CCAACCAGGTACTAATATGTGTGCATACATACATACATGCGTTGATGTGA
GTAAAGCAAAAGGGTCCCTGTTACATAGTGCCAAACCTTTCGACGATCTT
GTCCCGGGCACCCGGTCCTGGTTTGGCCACCGTTATGCAGGGACTTCGGC
TAAAACAAATGTCGTTCGGCCAAATGTTGACCATGCGCCTGCCAGATTTT
TTGTCGATTGATTTTTTTTTTTTTATGTGACCAAGACTGAATCCCTCTAC
GTTCGTTCCCTCTCCATCTCTCTATTTTCTGTCTTTCTCTCCCTCTCTCT
CTGTGTGTCTCTGTGTCTCTGTGTCTCTGTGTCTCTCTGCCTCTGTCTCT
CTCCCTCTCTCCCTCTCTCTCTCTCTCTCTGTGTCGTTCCCTCTCCATCT
CTCTATTTTCTGTCTTTCTCTCCCTCTCGCTCTCTGTGTCTCTGTATCTC
TGTGTCTCTGTGTCTCTCTGCCTCTGTCTCTCTCCCTCTCTCCCTCTCTC
CCTCTCTCTCTCTCTGTGTGTCTTCTGTCTCTTCTTTCTCTGTCTCTCTC
CATCTGCCTGTTGTTTTACGAATGCACGCGTGCACACAGTTTCAACCTCC
GATATACCAGCTGATCGTGAGCGAGGTTTGTGGAGAGACACGCTTCTCGG
CGGCGGTGGCCAAGCGGCTAGAGTCTCTGGGGGCTCTCACCCAGGTCAGA
ACGTAAAAACAACCTTTTTGTTAGGTCCCTGTCGTTTTTGTTGTTGTCGT
TGTGGCTGCTCTTTGTTGATGTTGTGGTGGTGGTGGTTGTGGTTGTGGTT
GCCGTTCGTGTAGTGTTAGTTGTTTTTGTTGATGCTGTCGTCCTCTTTGT
CGCTACTTGGCTGTTGCGACACAGACAACAATCAATTTGTCAGCTCCTTG
TCGTTGTTGTTGTTGTTGTCGTTGTTGCTGCTGCGGCTGCTATTTGTTGA
TGTTGCGGTGGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGCCGTTCGTG
TAATGTTATTTTTATTTTTTTATACTGTCGTCCTCTTTGTCGCTACTTGG
ATGTTGCGACACATTGTCGAGAATTGTTTGGTCCGGTTCAACGGCACTGC
GAGCGGTCCACACCGACACGCACAAGTTGATGCTGACTTGACTTCCAGTA
CACCCACGCTTCCTGCCAGTGCTTCTCTCGCTCTGTACTTTTGTTTTTTG
TTTTTGTGTCTGTGTTGTCTACCTCTCTTTATTTCTCCTCCTTCCTTTCG
TTACGATATATTGCCGTAGTGTTTTTTTTGCTTCCGTCCTCCTTCTTACC
GCTCGTTCTAAATTTGATATCGTTCTCGTTCAACAATTGTTCTTGTTCCG
GTTGGGACGTGTCTCCTCCCCTAGGGGGACCGGAGGGCCTCCCACGCGGG
GGCGGGGGAGCTGGGCTTCACGGCTTTCAACGTGGACAACCAGTGAGTTG
GTTCCTTCCTATATGCATAGTCGCCCGACCCACCGAGCGACGGTTTCATG
TCACGACCTATGACAACGACGTTTTCTCATATGTCACAACATCACGTAGT
ATACGCACTCACGGACGATAGCTGCGGCGTGCCCTCAACCGGTTAGCACT
CTGTTGTTGGTGGTGTCATTGTTGTGCTTATGCTACCTTCAAGTTGCCCT
TCCGTACGCTCACCCGGCCTCCCTCGTAACGGAAATTGCGACTGTTGTTG
TTGATTTTTTCGATCGCACTGGCTCTTTTCTTGGTGCTGCTGCCTTTTTG
TCGCCCCCCCGGGGTCGATGGTCTAAATACTACGGCATTCGTTTACATGA
GTACAACCAAACGCGACGCCCCCCCCCCTAGATATGGCAAGATGAGCTTG
GACCACATCTACCGCCTGTGCATCTCGAACGGAGAGAAGCCGGTGGTGCA
GCCTCCGGACCTTGCAGACGATGAGTGTGCACACATCCGCGATGAGGTAG
ATGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8214:4941..6995-

>mRNA_Ecto-sp13_S_contig8214.19571.1 ID=mRNA_Ecto-sp13_S_contig8214.19571.1|Name=mRNA_Ecto-sp13_S_contig8214.19571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8214:4941..6995- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTGTTGGCTCCCCCCCCCCCGTCCAGGCTGCACATCACGTTGGAACT
CCCTTGGTCCGCAGACAAAGCCATCCAGCAGCTGGGCAGAACCCATAGGG
CCAACCAGTTTCAACCTCCGATATACCAGCTGATCGTGAGCGAGGTTTGT
GGAGAGACACGCTTCTCGGCGGCGGTGGCCAAGCGGCTAGAGTCTCTGGG
GGCTCTCACCCAGGGGGACCGGAGGGCCTCCCACGCGGGGGCGGGGGAGC
TGGGCTTCACGGCTTTCAACGTGGACAACCAATATGGCAAGATGAGCTTG
GACCACATCTACCGCCTGTGCATCTCGAACGGAGAGAAGCCGGTGGTGCA
GCCTCCGGACCTTGCAGACGATGAGTGTGCACACATCCGCGATGAGGTAG
ATGAT
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