mRNA_Ecto-sp13_S_contig8211.19570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8211.19570.1
Unique NamemRNA_Ecto-sp13_S_contig8211.19570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8211.19570.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 1276 bits (3301), Expect = 0.000e+0
Identity = 653/679 (96.17%), Postives = 668/679 (98.38%), Query Frame = 3 
Query:    3 HVTVEQIVYEGHLDLGENLWEKLGRPVGMPHLEERDLKLLDEAVSILNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEEGDVA-EDMTPEAAAAALRVSEREKEEEAMKKPPKLPEIILFWGRNMRRGGNLVVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMRDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAVFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSQVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGAVAVTIYVGVSYDLEGPGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTTLMLINKVSLTWRRMANEVVSHARDSAQGEFSVRDILKFLLQVLPLTPLFLVSLPIPVLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPNRPYWHLCKTSANRLGCIAVNIGTGEEESSKTLLVSPDYIPDKPLAHADAPASVC 2036
            H TVEQIVYEGH+DLGENLWEKLGRPVGMPHLEERDLKLLDEA+S+LNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEE DVA ED+TPEAAAAALRVSER+KEEEAMKKPPKLPEIILFWGRNMRRGGNL+VCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARM+DPIVRVSQCRLVRHHQGQLSGQGFLAIGLA FGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMS+VSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSG V VTI+VGVS++ EG GYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDT LMLINKVSLTWRRMANEVVSHARDSA+GEFSVRDILKFLLQVLPLTPLFLVSLPIP+LYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIP+RPYWHL KTSANRLGCIAV IGTGEEE+SKTLLVSPDYIPDKPLAHADAPASVC
Sbjct:    6 HFTVEQIVYEGHIDLGENLWEKLGRPVGMPHLEERDLKLLDEAISLLNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEESDVAPEDLTPEAAAAALRVSERDKEEEAMKKPPKLPEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSVRDILKFLLQVLPLTPLFLVSLPIPLLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPSRPYWHLSKTSANRLGCIAVKIGTGEEENSKTLLVSPDYIPDKPLAHADAPASVC 684
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8211.19570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH51_9PHAE0.000e+096.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8211contigEcto-sp13_S_contig8211:2732..6035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2222
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000720.1
Cds size1953
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8211.19570.1prot_Ecto-sp13_S_contig8211.19570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8211 2818..5852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.8570907-UTR-Ecto-sp13_S_contig8211:2731..28171681464092.8570907-UTR-Ecto-sp13_S_contig8211:2731..2817Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8211 2732..2817 +
1681464092.920518-UTR-Ecto-sp13_S_contig8211:5852..60351681464092.920518-UTR-Ecto-sp13_S_contig8211:5852..6035Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8211 5853..6035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.8687184-CDS-Ecto-sp13_S_contig8211:2817..29221681464092.8687184-CDS-Ecto-sp13_S_contig8211:2817..2922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8211 2818..2922 +
1681464092.8794355-CDS-Ecto-sp13_S_contig8211:3192..35961681464092.8794355-CDS-Ecto-sp13_S_contig8211:3192..3596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8211 3193..3596 +
1681464092.8902385-CDS-Ecto-sp13_S_contig8211:3846..40931681464092.8902385-CDS-Ecto-sp13_S_contig8211:3846..4093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8211 3847..4093 +
1681464092.9003184-CDS-Ecto-sp13_S_contig8211:4383..45451681464092.9003184-CDS-Ecto-sp13_S_contig8211:4383..4545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8211 4384..4545 +
1681464092.9096756-CDS-Ecto-sp13_S_contig8211:4817..58521681464092.9096756-CDS-Ecto-sp13_S_contig8211:4817..5852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8211 4818..5852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8211.19570.1

>prot_Ecto-sp13_S_contig8211.19570.1 ID=prot_Ecto-sp13_S_contig8211.19570.1|Name=mRNA_Ecto-sp13_S_contig8211.19570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=651bp
MPHLEERDLKLLDEAVSILNPPEAHVRVVEVDTFTESERSIVKGSARIGH
GDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEEGDVAEDMTPEAAA
AALRVSEREKEEEAMKKPPKLPEIILFWGRNMRRGGNLVVCPGESSMDRL
IQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDA
LENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLN
QEATWPWVFKHILLCARMRDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAV
FGVYLEVFPTTDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSQV
SPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGAVAVTIYVGVSYDLE
GPGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFD
TTLMLINKVSLTWRRMANEVVSHARDSAQGEFSVRDILKFLLQVLPLTPL
FLVSLPIPVLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSV
TWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPNRPYW
HLCKTSANRLGCIAVNIGTGEEESSKTLLVSPDYIPDKPLAHADAPASVC
*
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mRNA from alignment at Ecto-sp13_S_contig8211:2732..6035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8211.19570.1 ID=mRNA_Ecto-sp13_S_contig8211.19570.1|Name=mRNA_Ecto-sp13_S_contig8211.19570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8211:2732..6035+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATGTCACGGTTGAGCAAATCGTGTACGAAGGACACCTCGATCTGGGA
GAGAATCTGTGGGAAAAGCTCGGCAGGCCGGTGGGAATGCCGCACCTTGA
AGAACGAGACCTCAAGCTCCTCGACGAAGCGGTATCTATTTTGAACCCGC
CAGAGGCCCACGTGCGCGTGGTCGAAGTGGACACCTTCACGGTGAGAGGA
CGAGCGATCTGGTTGAAACGGCAAGGGCGGTCTTGCATTCGATCGACCAC
GCGTACAAGAGGGGACGGTCGTGCTTTTCGGTCAGGGCGTAGGCGGTGGC
TCCAGGGCCACGCCCGAGATAAAACTTGCAGGACATTCAACAAACGTCAG
GAGCAGCTTTACTCGTTGAGAATGGACGACATCGATATGTTCTTCCGATG
TTGTTGGAATGGACATAGATCGTCGTTCATCTCCGTTGCTGCTGGCTTTT
TGCTGTCACAGGAAAGTGAGCGCTCCATCGTAAAAGGGAGCGCCCGTATT
GGCCACGGCGACTTCTCCCTGAGGCAGATGACGGCAATTTTCAAGCGAGC
TTCGCCGTCCGGGTTGGGCATAGCGGAACTGACAGCCACAAATGACGATG
AGAGTAAGGCCGAAGAAGGCGACGTTGCCGAAGATATGACGCCAGAGGCT
GCGGCGGCGGCGCTCAGGGTATCCGAAAGAGAGAAGGAAGAGGAAGCGAT
GAAGAAGCCACCAAAGCTCCCCGAGATAATTCTCTTCTGGGGTAGGAACA
TGCGCCGGGGAGGGAATCTGGTCGTGTGCCCCGGCGAATCGTCCATGGAC
CGGCTCATACAGGCCTATTTGGTGTGCGAAGTTGTCCAAGACAGCAAGCT
CTTCGACAAGAGCGTGTGAGTCGGAGCGATAACATTTTTGCACCCGTGGG
CCTCCTTCGAGCGTAACGCGGCCCCTGCGAGATCCACATGTGGCACGATG
TACGACATAGCCTGGGATTGTGGTCCTTGAATCCTTCGTCAGGCTTACCA
CTCGCGCTAAGATCTTCGTGCTTTTGTACCGTTGTCTCGTCGTCCTTTCT
CGCGACGCTCTGCCCCCCGCCTCTCCCTTGTCCATCGCCGCCCGTGGGAC
GTGCTCATCCCAAAGGACGTCATTCAGGGAGCGTGTGACGACCGAACGGA
AGGGGGGGTTGATGGGGGTCGAACTAGGTGAAACGTCGACCGCGGAACAA
GATGCACTCGAGAACTTAATCAGCGACTACAGTTTCCACGATGCGTCGAT
CGGAATCATTTCGCTCGTCGCGAGTATCTACTACTTCTTCGTCTTAGCCA
GGAACCACGTGAACGTGCTGACGTTGCTGGCAGTGGCGGTTGTGGCCGGC
TTGAACCAAGAGGTACACGTTGCGTGCGCTTTGTCAAGTGTTCGCTTTTT
TGCGTTTGCGACTGTGCGTCAGTCATGGCTGTGGTCTCATGGTCGCAACT
TCTGACGGCGCCAGGCGATTCCGGTGGAGCGTGGCATTTACTGGGGCGCA
GAACATGCAACGCGTTGTTCGAGAGTCCACGGCTCTTGGTCTTGAAGCCG
TTCCAATTCCTGCACTTGTGCTCGTGCTTGCGTAGGCCTCCGAGGTGCCT
CAGGTCACGCGTGCTCACACGCCGATCGTCCGTCGTACGTTTGCTCCACC
AGGCCACCTGGCCATGGGTGTTCAAGCACATTCTCCTGTGCGCTCGCATG
AGGGACCCGATAGTCAGAGTGTCCCAGTGCCGGCTTGTCCGCCATCACCA
AGGACAGTTGTCTGGGCAGGGATTTCTCGCCATCGGGCTAGCGGTATTCG
GTGTCTACCTCGAGGTGAGTCGTGGAACCGTGACATATTTATTTCCCTCT
TTTTCTCCGTCACGCAAAATCGTGCGTGTTGATCGTTCTGCGTTGCGTTT
CGGAAGGGGGCTAAATATGTGCCACATGGTTTCCCTTAAGAAGTAAATAG
CCCATGTAAATAGTTGGGACTGGTTCCACGGGTAATTTTTTCCGTGGTTG
ATCTTCGGTCGAGTGTTGCAATGGCTCTCAAAAACAGTTGGGGCTTGACA
TAGAAGTCGGTTCATCCCTCCTGTTACGCGACTCAGGTGTTTCCGACGAC
AGATGGCGACACGCCGCTGTTATTCCGCATTCTCCTGAACGGATTTCAAG
CCGCGATGGTCGCCGTTCTCGTGGTGAACATGGTGCAAGCGGTGGAACCC
ATGGATATGTCTCAAGTCAGCCCGAAGGACCGCCTGAGGCCGTGGGCAAG
GAAGTACTTGGACGACAACGTCTTCGACACCAAGTGGTACCTCACGCTGC
TCGTCGGGGTCTTGTGGTCAGGCGCTGTTGCGGTCACGATCTATGTCGGT
GTATCGTACGACCTTGAGGGCCCCGGCTACACCATTCCCGTCATCTGCTT
GATTGTGCTGGGGCTATCTATTGCTGCGGTGAATCCGGGAATGGCTCTCC
TGGGCGCTTGGGGTTTCATATGGCTGGTGCCCGTGGGGTTGGCGTTCGTG
TGCCGGTCGGCATTCGACACCACTCTGATGCTCATCAACAAGGTGTCGCT
CACGTGGAGGCGCATGGCAAACGAGGTTGTCTCGCATGCGAGGGACAGCG
CGCAGGGAGAGTTCAGCGTGCGGGATATCCTGAAGTTTCTGCTACAGGTG
CTGCCGCTCACGCCTCTGTTCCTGGTGTCCTTGCCCATCCCTGTGCTCTA
CTTTTTCGTGTGGTTCATCCACCTCTCCATGCGAGTGCTCCTGCGTGTGG
CCGATGCTCTGAGTGCACCAGCGTTAGATTTCCGCTTGCACCCGATTTTG
AGCGACTATGGTTCGGTGACATGGAAAATGGACCGCTTGTCCATGGACGT
GGAGAATAGATCCATGAGAACACTTCTCATGGCAAGGATCGACAAGCTCA
TGGAATCCACATCGGCCACCCTTGGAGAGCGCTCCAGGAGCGGGGTAATA
CCTAACAGGCCATACTGGCACCTGTGTAAAACGTCCGCGAACAGACTCGG
GTGTATCGCCGTCAATATTGGTACCGGCGAGGAAGAGAGTTCCAAAACCC
TTCTCGTCAGCCCCGACTACATTCCCGACAAACCTTTAGCACACGCAGAC
GCACCTGCTAGCGTCTGTTGAGCTTGTGATTCCTCCAACAGTATCCCCCC
GCCCCTACATATTCGGGGGTTTGCGTTGGGCTCTTGCCAACTCCCGGGGA
ACGTGGTTGCAACCGGACGTGGGGGCCGTGATTGCTAGCCCGGCACCAAG
TGGTTTGCTGGATTTTTTTTTTTATTGGGGGTGGGGTGATCTTCTTGTGT
TGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8211:2732..6035+

>mRNA_Ecto-sp13_S_contig8211.19570.1 ID=mRNA_Ecto-sp13_S_contig8211.19570.1|Name=mRNA_Ecto-sp13_S_contig8211.19570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8211:2732..6035+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCACCTTGAAGAACGAGACCTCAAGCTCCTCGACGAAGCGGTATC
TATTTTGAACCCGCCAGAGGCCCACGTGCGCGTGGTCGAAGTGGACACCT
TCACGGAAAGTGAGCGCTCCATCGTAAAAGGGAGCGCCCGTATTGGCCAC
GGCGACTTCTCCCTGAGGCAGATGACGGCAATTTTCAAGCGAGCTTCGCC
GTCCGGGTTGGGCATAGCGGAACTGACAGCCACAAATGACGATGAGAGTA
AGGCCGAAGAAGGCGACGTTGCCGAAGATATGACGCCAGAGGCTGCGGCG
GCGGCGCTCAGGGTATCCGAAAGAGAGAAGGAAGAGGAAGCGATGAAGAA
GCCACCAAAGCTCCCCGAGATAATTCTCTTCTGGGGTAGGAACATGCGCC
GGGGAGGGAATCTGGTCGTGTGCCCCGGCGAATCGTCCATGGACCGGCTC
ATACAGGCCTATTTGGTGTGCGAAGTTGTCCAAGACAGCAAGCTCTTCGA
CAAGAGCGTGACGTCATTCAGGGAGCGTGTGACGACCGAACGGAAGGGGG
GGTTGATGGGGGTCGAACTAGGTGAAACGTCGACCGCGGAACAAGATGCA
CTCGAGAACTTAATCAGCGACTACAGTTTCCACGATGCGTCGATCGGAAT
CATTTCGCTCGTCGCGAGTATCTACTACTTCTTCGTCTTAGCCAGGAACC
ACGTGAACGTGCTGACGTTGCTGGCAGTGGCGGTTGTGGCCGGCTTGAAC
CAAGAGGCCACCTGGCCATGGGTGTTCAAGCACATTCTCCTGTGCGCTCG
CATGAGGGACCCGATAGTCAGAGTGTCCCAGTGCCGGCTTGTCCGCCATC
ACCAAGGACAGTTGTCTGGGCAGGGATTTCTCGCCATCGGGCTAGCGGTA
TTCGGTGTCTACCTCGAGGTGTTTCCGACGACAGATGGCGACACGCCGCT
GTTATTCCGCATTCTCCTGAACGGATTTCAAGCCGCGATGGTCGCCGTTC
TCGTGGTGAACATGGTGCAAGCGGTGGAACCCATGGATATGTCTCAAGTC
AGCCCGAAGGACCGCCTGAGGCCGTGGGCAAGGAAGTACTTGGACGACAA
CGTCTTCGACACCAAGTGGTACCTCACGCTGCTCGTCGGGGTCTTGTGGT
CAGGCGCTGTTGCGGTCACGATCTATGTCGGTGTATCGTACGACCTTGAG
GGCCCCGGCTACACCATTCCCGTCATCTGCTTGATTGTGCTGGGGCTATC
TATTGCTGCGGTGAATCCGGGAATGGCTCTCCTGGGCGCTTGGGGTTTCA
TATGGCTGGTGCCCGTGGGGTTGGCGTTCGTGTGCCGGTCGGCATTCGAC
ACCACTCTGATGCTCATCAACAAGGTGTCGCTCACGTGGAGGCGCATGGC
AAACGAGGTTGTCTCGCATGCGAGGGACAGCGCGCAGGGAGAGTTCAGCG
TGCGGGATATCCTGAAGTTTCTGCTACAGGTGCTGCCGCTCACGCCTCTG
TTCCTGGTGTCCTTGCCCATCCCTGTGCTCTACTTTTTCGTGTGGTTCAT
CCACCTCTCCATGCGAGTGCTCCTGCGTGTGGCCGATGCTCTGAGTGCAC
CAGCGTTAGATTTCCGCTTGCACCCGATTTTGAGCGACTATGGTTCGGTG
ACATGGAAAATGGACCGCTTGTCCATGGACGTGGAGAATAGATCCATGAG
AACACTTCTCATGGCAAGGATCGACAAGCTCATGGAATCCACATCGGCCA
CCCTTGGAGAGCGCTCCAGGAGCGGGGTAATACCTAACAGGCCATACTGG
CACCTGTGTAAAACGTCCGCGAACAGACTCGGGTGTATCGCCGTCAATAT
TGGTACCGGCGAGGAAGAGAGTTCCAAAACCCTTCTCGTCAGCCCCGACT
ACATTCCCGACAAACCTTTAGCACACGCAGACGCACCTGCTAGCGTCTGT
TGA
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