mRNA_Ecto-sp13_S_contig8207.19565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE) HSP 1 Score: 243 bits (621), Expect = 1.920e-77 Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 1
Query: 58 QGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
+GMFPA NPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPV AAGAGD+GTE EGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLST LAPRIKEVKVFGSGADRDGFLGSD CPLMLT+LP
Sbjct: 268 KGMFPAANPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVPAAGAGDAGTETEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTVLAPRIKEVKVFGSGADRDGFLGSDHCPLMLTLLP 392
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S1T2D0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T2D0_9CHLO) HSP 1 Score: 116 bits (291), Expect = 7.920e-31 Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 70 PAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYR-----RLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
PA NP+D GQPGCT E+RR +L+ GG LVDAYR N AA A +G +WRG+ G+ +A GRYYGKGMRID+ L+S L R+ + ++ G G + GFLGSD CP++LT+LP
Sbjct: 11 PAENPDDRGQPGCTNNERRRFFLMLDQGG-LVDAYRCKAGSEFNMEQAAFA--AGPH---FSWRGSRGSDIAERGRYYGKGMRIDHLLVSEELMARVADAQILGRGPEAKGFLGSDHCPMLLTLLP 130
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S0JJC5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJC5_9EUKA) HSP 1 Score: 110 bits (274), Expect = 7.670e-28 Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
+D GQPG T E+ R + LL++GG LVDAYR+L+P + + +TWRG G A GRYY KGMRIDY L S +L PRIK V G+G +R GFLGSD CPL++ +
Sbjct: 39 DDKGQPGFTANEQTRFAALLKAGG-LVDAYRQLHPTA--------NWQTDVTWRGAPGINNPAEGRYYNKGMRIDYVLTSQSLVPRIKSAVVHGTGPERSGFLGSDHCPLIVEL 143
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: R1D0C8_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0C8_EMIHU) HSP 1 Score: 103 bits (258), Expect = 1.680e-23 Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQ-VAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
+D GQPG TP E+ R LL +GG LVDAYR L+PV+ + T+ +TWRG AG A GRYY KGMRIDY L+ LA + +V G GA+R GFLGSD CPL++ +
Sbjct: 250 DDRGQPGFTPNEQARFRSLLAAGG-LVDAYRTLHPVA-----NWATD---VTWRGCAGKDGPPAAGRYYAKGMRIDYVLVDRRLAGSVVRAEVLGGGAERRGFLGSDHCPLLVEL 355
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A516AG33_LINPO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG33_LINPO) HSP 1 Score: 101 bits (252), Expect = 8.230e-23 Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 82 PEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGA--GDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
PE+ G PG + E+ R SRL +GG L DA+RRL+ V GD+ TWRGT Q RY G G R+DYFLLS ALAPR+ ++ G GA R+GFLGSD CP++L +
Sbjct: 253 PENRGIPGFSDGERERFSRLFTAGG-LFDAWRRLHRVGETPPEPGDAA-----FTWRGTPAVQSRFRARYEGMGQRLDYFLLSEALAPRLARCEILGRGAGREGFLGSDHCPVLLEL 363
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: F0YDJ9_AURAN (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ9_AURAN) HSP 1 Score: 100 bits (248), Expect = 1.090e-21 Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQ-VAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
+D GQPGCTP E R LL +GG L DA+R AGAG + E +WRG G + GRYYGKGMRID+ L+ST +A ++ + G G RDGF+GSD CPL L +
Sbjct: 258 DDEGQPGCTPRESRYFDALLRAGG-LFDAFR---DARGAGAGAATIEGPHFSWRGPPGRDGLPETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVL 366
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: D8TDW8_SELML (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TDW8_SELML) HSP 1 Score: 96.7 bits (239), Expect = 4.580e-21 Identity = 60/133 (45.11%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 28 THPTHPPVPTQGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
THP TQ + PN ED+GQPG T E+ R S +L G LVD YR L+ A G TW +GN V G+Y GK MRIDYFL+S AL PR+ K+ G G + +GFLGSD CPL + +
Sbjct: 225 THPEFFANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGN-LVDTYRHLHEKQDLEA--------GFTW---SGNPV---GKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S1NTG2_9EUGL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NTG2_9EUGL) HSP 1 Score: 95.1 bits (235), Expect = 5.300e-21 Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPR--IKEVKVFGSGADRDGFLGSDQCPLMLTI 426
ED GQPG TP E++R + +LE+GG LVD YR L+P +A + TWRG+ +YYG+GMRIDY L+S L R ++E +V G GA+R GF+GSD P++L +
Sbjct: 164 EDVGQPGFTPREQQRFAAILEAGG-LVDTYRHLHPEPSA---------DDYTWRGSP----PVYAKYYGRGMRIDYALMSRPLVNRLGVRESRVVGRGAERGGFMGSDHSPVVLVL 265
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A812QKL5_SYMPI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QKL5_SYMPI) HSP 1 Score: 95.1 bits (235), Expect = 1.210e-20 Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 79 NPEDS-GQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVS----AAGAGDSGTEKEGMTWRG--TAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTIL 429
+PED GQPG T E+RR LLE+G LVDAYR+L+P + AAG TWRG VA +Y+ KGMRIDY L++ + R++ + G GADR+GFLGSD CPL LT+L
Sbjct: 185 DPEDMRGQPGFTEGERRRFKELLETGR-LVDAYRQLHPANDVPPAAGP--------YFTWRGHPPVHQNVA---KYHAKGMRIDYALVAEEILSRLEACDILGQGADRNGFLGSDHCPLRLTLL 296
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A2R6WEE2_MARPO (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WEE2_MARPO) HSP 1 Score: 95.1 bits (235), Expect = 2.580e-20 Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 58 QGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
Q + PN ED GQPG T AEK+R S++L+ GG LVD+YR L+ S + G +W G A +G+Y GK MRIDYFL+S L R+ + GSG D G+ GSD CP+ L + P
Sbjct: 248 QKDYTPPNAEDVGQPGFTAAEKQRFSQILKDGG-LVDSYRWLHK--------SQDFENGFSWSGNA------VGKYRGKRMRIDYFLISEQLVGRLLHSDIQGSGIDHKGYCGSDHCPITLELSP 357 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8207.19565.1 >prot_Ecto-sp13_S_contig8207.19565.1 ID=prot_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp MSTPHLPPRTHPTHPPVPTQGMFPAPNPEDSGQPGCTPAEKRRHSRLLESback to top mRNA from alignment at Ecto-sp13_S_contig8207:65..1193+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8207.19565.1 ID=mRNA_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8207:65..1193+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8207:65..1193+ >mRNA_Ecto-sp13_S_contig8207.19565.1 ID=mRNA_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8207:65..1193+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |