mRNA_Ecto-sp13_S_contig8207.19565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8207.19565.1
Unique NamemRNA_Ecto-sp13_S_contig8207.19565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.920e-77
Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 1
Query:   58 QGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
            +GMFPA NPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPV AAGAGD+GTE EGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLST LAPRIKEVKVFGSGADRDGFLGSD CPLMLT+LP
Sbjct:  268 KGMFPAANPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVPAAGAGDAGTETEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTVLAPRIKEVKVFGSGADRDGFLGSDHCPLMLTLLP 392          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S1T2D0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T2D0_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 7.920e-31
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   70 PAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYR-----RLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
            PA NP+D GQPGCT  E+RR   +L+ GG LVDAYR       N   AA A  +G      +WRG+ G+ +A  GRYYGKGMRID+ L+S  L  R+ + ++ G G +  GFLGSD CP++LT+LP
Sbjct:   11 PAENPDDRGQPGCTNNERRRFFLMLDQGG-LVDAYRCKAGSEFNMEQAAFA--AGPH---FSWRGSRGSDIAERGRYYGKGMRIDHLLVSEELMARVADAQILGRGPEAKGFLGSDHCPMLLTLLP 130          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S0JJC5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJC5_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 7.670e-28
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            +D GQPG T  E+ R + LL++GG LVDAYR+L+P +          +  +TWRG  G    A GRYY KGMRIDY L S +L PRIK   V G+G +R GFLGSD CPL++ +
Sbjct:   39 DDKGQPGFTANEQTRFAALLKAGG-LVDAYRQLHPTA--------NWQTDVTWRGAPGINNPAEGRYYNKGMRIDYVLTSQSLVPRIKSAVVHGTGPERSGFLGSDHCPLIVEL 143          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: R1D0C8_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0C8_EMIHU)

HSP 1 Score: 103 bits (258), Expect = 1.680e-23
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQ-VAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            +D GQPG TP E+ R   LL +GG LVDAYR L+PV+     +  T+   +TWRG AG     A GRYY KGMRIDY L+   LA  +   +V G GA+R GFLGSD CPL++ +
Sbjct:  250 DDRGQPGFTPNEQARFRSLLAAGG-LVDAYRTLHPVA-----NWATD---VTWRGCAGKDGPPAAGRYYAKGMRIDYVLVDRRLAGSVVRAEVLGGGAERRGFLGSDHCPLLVEL 355          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A516AG33_LINPO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG33_LINPO)

HSP 1 Score: 101 bits (252), Expect = 8.230e-23
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   82 PEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGA--GDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            PE+ G PG +  E+ R SRL  +GG L DA+RRL+ V       GD+       TWRGT   Q     RY G G R+DYFLLS ALAPR+   ++ G GA R+GFLGSD CP++L +
Sbjct:  253 PENRGIPGFSDGERERFSRLFTAGG-LFDAWRRLHRVGETPPEPGDAA-----FTWRGTPAVQSRFRARYEGMGQRLDYFLLSEALAPRLARCEILGRGAGREGFLGSDHCPVLLEL 363          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: F0YDJ9_AURAN (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ9_AURAN)

HSP 1 Score: 100 bits (248), Expect = 1.090e-21
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQ-VAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            +D GQPGCTP E R    LL +GG L DA+R       AGAG +  E    +WRG  G   +   GRYYGKGMRID+ L+ST +A  ++   + G G  RDGF+GSD CPL L +
Sbjct:  258 DDEGQPGCTPRESRYFDALLRAGG-LFDAFR---DARGAGAGAATIEGPHFSWRGPPGRDGLPETGRYYGKGMRIDHALVSTGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVL 366          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: D8TDW8_SELML (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TDW8_SELML)

HSP 1 Score: 96.7 bits (239), Expect = 4.580e-21
Identity = 60/133 (45.11%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   28 THPTHPPVPTQGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            THP      TQ  +  PN ED+GQPG T  E+ R S +L  G  LVD YR L+      A        G TW   +GN V   G+Y GK MRIDYFL+S AL PR+   K+ G G + +GFLGSD CPL + +
Sbjct:  225 THPEFFANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGN-LVDTYRHLHEKQDLEA--------GFTW---SGNPV---GKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A7S1NTG2_9EUGL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NTG2_9EUGL)

HSP 1 Score: 95.1 bits (235), Expect = 5.300e-21
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   85 EDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPR--IKEVKVFGSGADRDGFLGSDQCPLMLTI 426
            ED GQPG TP E++R + +LE+GG LVD YR L+P  +A         +  TWRG+         +YYG+GMRIDY L+S  L  R  ++E +V G GA+R GF+GSD  P++L +
Sbjct:  164 EDVGQPGFTPREQQRFAAILEAGG-LVDTYRHLHPEPSA---------DDYTWRGSP----PVYAKYYGRGMRIDYALMSRPLVNRLGVRESRVVGRGAERGGFMGSDHSPVVLVL 265          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A812QKL5_SYMPI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QKL5_SYMPI)

HSP 1 Score: 95.1 bits (235), Expect = 1.210e-20
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   79 NPEDS-GQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVS----AAGAGDSGTEKEGMTWRG--TAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTIL 429
            +PED  GQPG T  E+RR   LLE+G  LVDAYR+L+P +    AAG           TWRG       VA   +Y+ KGMRIDY L++  +  R++   + G GADR+GFLGSD CPL LT+L
Sbjct:  185 DPEDMRGQPGFTEGERRRFKELLETGR-LVDAYRQLHPANDVPPAAGP--------YFTWRGHPPVHQNVA---KYHAKGMRIDYALVAEEILSRLEACDILGQGADRNGFLGSDHCPLRLTLL 296          
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Match: A0A2R6WEE2_MARPO (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WEE2_MARPO)

HSP 1 Score: 95.1 bits (235), Expect = 2.580e-20
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   58 QGMFPAPNPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP 432
            Q  +  PN ED GQPG T AEK+R S++L+ GG LVD+YR L+         S   + G +W G A      +G+Y GK MRIDYFL+S  L  R+    + GSG D  G+ GSD CP+ L + P
Sbjct:  248 QKDYTPPNAEDVGQPGFTAAEKQRFSQILKDGG-LVDSYRWLHK--------SQDFENGFSWSGNA------VGKYRGKRMRIDYFLISEQLVGRLLHSDIQGSGIDHKGYCGSDHCPITLELSP 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8207.19565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE1.920e-7793.60DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1T2D0_9CHLO7.920e-3149.21Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S0JJC5_9EUKA7.670e-2850.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R1D0C8_EMIHU1.680e-2350.43DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A516AG33_LINPO8.230e-2347.86DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
F0YDJ9_AURAN1.090e-2147.83Endo/exonuclease/phosphatase domain-containing pro... [more]
D8TDW8_SELML4.580e-2145.11DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1NTG2_9EUGL5.300e-2144.83DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A812QKL5_SYMPI1.210e-2047.58DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2R6WEE2_MARPO2.580e-2044.00DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8207contigEcto-sp13_S_contig8207:65..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score238.0
Seed ortholog evalue2.7e-60
Seed eggNOG ortholog2880.D7FVZ7
Model size435
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009507,GO:0009536,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016889,GO:0016894,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
Exons2
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
Cds size435
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.4687939-CDS-Ecto-sp13_S_contig8207:64..3581681464092.4687939-CDS-Ecto-sp13_S_contig8207:64..358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8207 65..358 +
1681464092.4799454-CDS-Ecto-sp13_S_contig8207:1052..11931681464092.4799454-CDS-Ecto-sp13_S_contig8207:1052..1193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8207 1053..1193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8207.19565.1prot_Ecto-sp13_S_contig8207.19565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8207 65..1193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8207.19565.1

>prot_Ecto-sp13_S_contig8207.19565.1 ID=prot_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MSTPHLPPRTHPTHPPVPTQGMFPAPNPEDSGQPGCTPAEKRRHSRLLES
GGGLVDAYRRLNPVSAAGAGDSGTEKEGMTWRGTAGNQVAAMGRYYGKGM
RIDYFLLSTALAPRIKEVKVFGSGADRDGFLGSDQCPLMLTILP*
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mRNA from alignment at Ecto-sp13_S_contig8207:65..1193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8207.19565.1 ID=mRNA_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8207:65..1193+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTACTCCCCACCTCCCACCCCGCACCCACCCAACGCACCCACCCGT GCCCACCCAGGGCATGTTCCCCGCTCCCAACCCGGAGGACAGCGGACAGC CTGGCTGCACCCCGGCCGAGAAACGGCGACACTCACGCCTCCTCGAGAGC GGCGGCGGTCTGGTGGACGCCTACCGGCGCTTGAACCCGGTCTCGGCCGC GGGTGCAGGGGACTCCGGAACGGAAAAGGAGGGTATGACCTGGAGGGGCA CCGCTGGGAACCAGGTCGCCGCGATGGGGCGGTACTACGGCAAGGTGACG TGCGGGATGTGGGGGGGGGGGCTTGCTGCGTAGGTTGGTTTCAGCACATG TGGTGGTTTCGTGAGGGACGTGGTCCACGAAAATGACCGTTGAAGAGCAG GCCCTCCTCGACGTGGCCGCTGGCTCCCGCGCGTACTTTGGCCGTTTTTT TTTGCTGTTGTGAAGGGTCACCCGAGCCAGAGGAACAGGACGCGTGGTCC TTGTGGTGGAGTAGCTGTGTTTTTTCTCAGTAGATCTCCGTCGCGCGTCC CGGTTCTCATGGACGCCAATCATGGTCTGTCTCAGTTTTGTCTGCAGTGC CGGGGGGTCGCGGATAGTTCACGTAAAAATCGAACCGGAGACAAACAGTC TCTTCACCACGGTCGAGTACTGTATGCAGTAGGCTGTTGTTGTATTGAGC ATAGTGTAGGATTCTCGCCTGTGCTGTGTCGGCGGTCTTCTTCTTTTTCG TGACAATTTGAGTCACTCTAATTCTTGGCGAAGTGTTTGCTTGACTGCAG GCCCGCACTGCTGTATTTTTGAACCTACTATCGCTATAGGGTGACAGGGG TCAGAGAGGCACGCTGGCTGTGCTCGTGCCGGACCGTAAAACGAAGCCTC AGCCTCCCCCCCAACGAACCACATGAAGCACGTTCATCCGCTTCCTCTTT GGCCTACATGGTTGCTTGACGCTCTTCCCCCTCCCCAGGGCATGCGGATC GACTACTTCCTCCTGTCGACGGCGCTTGCACCGCGCATCAAGGAGGTGAA GGTTTTTGGCAGCGGAGCCGACCGCGACGGTTTCCTGGGGTCTGACCAAT GCCCCCTCATGCTCACGATACTGCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8207:65..1193+

>mRNA_Ecto-sp13_S_contig8207.19565.1 ID=mRNA_Ecto-sp13_S_contig8207.19565.1|Name=mRNA_Ecto-sp13_S_contig8207.19565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8207:65..1193+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTACTCCCCACCTCCCACCCCGCACCCACCCAACGCACCCACCCGT
GCCCACCCAGGGCATGTTCCCCGCTCCCAACCCGGAGGACAGCGGACAGC
CTGGCTGCACCCCGGCCGAGAAACGGCGACACTCACGCCTCCTCGAGAGC
GGCGGCGGTCTGGTGGACGCCTACCGGCGCTTGAACCCGGTCTCGGCCGC
GGGTGCAGGGGACTCCGGAACGGAAAAGGAGGGTATGACCTGGAGGGGCA
CCGCTGGGAACCAGGTCGCCGCGATGGGGCGGTACTACGGCAAGGGCATG
CGGATCGACTACTTCCTCCTGTCGACGGCGCTTGCACCGCGCATCAAGGA
GGTGAAGGTTTTTGGCAGCGGAGCCGACCGCGACGGTTTCCTGGGGTCTG
ACCAATGCCCCCTCATGCTCACGATACTGCCGTAG
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