mRNA_Ecto-sp13_S_contig81862.19537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81862.19537.1
Unique NamemRNA_Ecto-sp13_S_contig81862.19537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.490e-31
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQ++ A P+DLQEV
Sbjct:  154 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQSKEADPKDLQEV 217          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.390e-27
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            S+F+TG+PDA C+VVTSQDALLHAGSERHRA+GEAAR+LKPGGRMVF D+MQ  HA P+DLQEV
Sbjct:  468 SYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLQEV 531          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.030e-27
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            S+F+TG+PDA C+VVTSQDALLHAGSERHRA+GEAAR+LKPGGRMVF D+MQ  +A P+DLQEV
Sbjct:  268 SYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNNADPKDLQEV 331          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.060e-26
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            S+F+TG+PDA C+VVTSQDALLHAGSERHRA+GEAAR+LKPGGRMVF D+MQ  HA P+DL++V
Sbjct:  325 SYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLKDV 388          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.310e-25
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            SFFETG+PDASCDVV SQDALLH+G ERHR++ EAARVLKPGGRMVF+DIMQ +   P+DLQ+V
Sbjct:  127 SFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQFKETDPKDLQDV 190          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.350e-17
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            SFFETG P  + D V SQD+LLHAGSER RA+ EAARVLKPGG +VFTDIMQ+  A   +L  V
Sbjct:  138 SFFETGEPAGAYDAVVSQDSLLHAGSERCRAIEEAARVLKPGGCLVFTDIMQSNDANTAELDAV 201          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 7.040e-16
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            S+F+T MP AS D V SQDA  HA +E HRA+ EAARVLKPGG M F+D MQ++ A P  L EV
Sbjct:  113 SYFDTEMPAASMDAVLSQDAFGHASTEHHRAIKEAARVLKPGGVMAFSDFMQSDDADPTKLGEV 176          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A6T8NTF3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NTF3_HEMAN)

HSP 1 Score: 76.3 bits (186), Expect = 5.870e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDL 183
            SFF+T     S D+V SQD+LLHAGSERH+ + EA+R+LK GG  VFTDIMQ++   PE L
Sbjct:  159 SFFDTEAESTSMDLVVSQDSLLHAGSERHKVIEEASRILKKGGYFVFTDIMQSDSCDPEVL 219          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A5J4YL55_PORPP (Dimethylglycine N-methyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL55_PORPP)

HSP 1 Score: 75.5 bits (184), Expect = 2.030e-14
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 SFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            SF  TG+ DAS DVV S D++LHAG ER + + EAAR+LKP GR+VF+D MQ E A  E L+ V
Sbjct:  394 SFTHTGLADASVDVVVSHDSILHAGPEREQVIAEAARILKPHGRLVFSDPMQCEDADSEALRAV 457          
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Match: A0A3E1KCJ9_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Wenzhouxiangella sediminis TaxID=1792836 RepID=A0A3E1KCJ9_9GAMM)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-12
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   13 TGMP--DASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHAKPEDLQEV 192
            T +P  D S DVV SQDA+LH+G +R R   EAARVLKPGGR++FTD MQ++ A PE LQ +
Sbjct:  127 TNLPYEDGSFDVVWSQDAILHSG-DRARVCAEAARVLKPGGRLIFTDPMQSDDADPERLQPI 187          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81862.19537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC33_9PHAE6.490e-3192.19Methyltransf_11 domain-containing protein n=2 Tax=... [more]
D7G5Z7_ECTSI1.390e-2779.69Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L6E6_9PHAE3.030e-2778.13Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6H5L7A2_9PHAE1.060e-2676.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7W9_ECTSI1.310e-2576.56Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A835YZA4_9STRA2.350e-1765.63Putative sarcosine-dimethylglycine methyltransfera... [more]
D8LE22_ECTSI7.040e-1660.94Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A6T8NTF3_HEMAN5.870e-1559.02Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A5J4YL55_PORPP2.030e-1457.81Dimethylglycine N-methyltransferase n=1 Tax=Porphy... [more]
A0A3E1KCJ9_9GAMM1.170e-1259.68Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81862contigEcto-sp13_S_contig81862:13..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.8
Seed ortholog evalue4.3e-25
Seed eggNOG ortholog2880.D8LII1
Model size192
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.3975127-CDS-Ecto-sp13_S_contig81862:12..1861681464090.3975127-CDS-Ecto-sp13_S_contig81862:12..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81862 13..186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.4096816-UTR-Ecto-sp13_S_contig81862:186..2041681464090.4096816-UTR-Ecto-sp13_S_contig81862:186..204Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81862 187..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81862.19537.1prot_Ecto-sp13_S_contig81862.19537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81862 13..186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81862.19537.1

>prot_Ecto-sp13_S_contig81862.19537.1 ID=prot_Ecto-sp13_S_contig81862.19537.1|Name=mRNA_Ecto-sp13_S_contig81862.19537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQAEHA
KPEDLQEV
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mRNA from alignment at Ecto-sp13_S_contig81862:13..204-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81862.19537.1 ID=mRNA_Ecto-sp13_S_contig81862.19537.1|Name=mRNA_Ecto-sp13_S_contig81862.19537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81862:13..204- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTCTTCGAAACGGGCATGCCGGACGCCAGCTGCGACGTAGTGACCTC CCAGGACGCTCTGCTGCACGCGGGGTCGGAGCGGCACAGGGCCCTCGGGG AGGCTGCCCGCGTGCTCAAGCCCGGCGGGAGGATGGTCTTCACGGATATC ATGCAGGCGGAGCACGCCAAGCCCGAGGACCTTCAGGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81862:13..204-

>mRNA_Ecto-sp13_S_contig81862.19537.1 ID=mRNA_Ecto-sp13_S_contig81862.19537.1|Name=mRNA_Ecto-sp13_S_contig81862.19537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81862:13..204- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGACGCCAGCTGCGACGTAGTGACCTCCCAGGACGCTCTGCTGCA
CGCGGGGTCGGAGCGGCACAGGGCCCTCGGGGAGGCTGCCCGCGTGCTCA
AGCCCGGCGGGAGGATGGTCTTCACGGATATCATGCAGGCGGAGCACGCC
AAGCCCGAGGACCTTCAGGAGGTA
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