mRNA_Ecto-sp13_S_contig8182.19533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8182.19533.1
Unique NamemRNA_Ecto-sp13_S_contig8182.19533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.290e-27
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
            ASHEGHVDTVSVLLRYQA+IDQRNRGQETPLHLACRQSHA VVRLLLENGADPR
Sbjct:  125 ASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPR 178          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: L1IFD5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFD5_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 2.200e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
            A+H G VDTV +LLR  A ID++N    T LH+AC + +  +V +LL +GAD
Sbjct:   12 AAHVGDVDTVRILLRQGANIDEKNYDGRTVLHIACAEGNYRMVEVLLNHGAD 63          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: C9SB95_VERA1 (Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID=C9SB95_VERA1)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQA--KIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            AS  G VD V +LL   A   I+   R + TPLH+AC   HA +VRLLL +GADP
Sbjct:  807 ASRYGPVDIVQLLLENHAVDTINDTVREEITPLHIACMNGHADIVRLLLSHGADP 861          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A816UPZ7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816UPZ7_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 2.970e-6
Identity = 23/61 (37.70%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQAKIDQRNRGQ---------ETPLHLACRQSHASVVRLLLENGAD 156
            A+ EGH+D V VL+R+ A +++  +GQ         +TPL +AC ++H +++R L+E+GA+
Sbjct:   10 AAEEGHLDVVEVLIRHGADVNRSPKGQVARDLHIENQTPLLMACTKNHETIIRHLIESGAN 70          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: UPI001F204A08 (ankyrin repeat domain-containing protein n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F204A08)

HSP 1 Score: 50.4 bits (119), Expect = 6.090e-6
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   19 VDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            V+ V ++L++ A ID  +  + TPL LA    HA VVRLLLE GADP
Sbjct:  123 VEMVRLMLQHHAYIDAESPNKSTPLMLAAHYGHADVVRLLLEEGADP 169          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A3Q1HK97_ANATE (Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HK97_ANATE)

HSP 1 Score: 50.1 bits (118), Expect = 6.500e-6
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
            A+ EG VDTV  L+R+ A ++  ++    PLHLA ++ H  VV+L++E  A+P+
Sbjct:   79 AAREGFVDTVRALMRHGADVNVADQLGNLPLHLAAKEGHLEVVKLVIEQTANPQ 132          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A2E8HP91_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E8HP91_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            AS +G V  V  LLR   ++       + P+H+A RQ+   VVRLLLENGADP
Sbjct:   56 ASADGDVSRVRTLLRGDPRLVNAQYWYQFPIHMAVRQNRPDVVRLLLENGADP 108          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A1V3S835_9BURK (Uncharacterized protein n=2 Tax=Hydrogenophaga sp. A37 TaxID=1945864 RepID=A0A1V3S835_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 1.300e-5
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   19 VDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            V+ V ++L + A ID  +  + TPL LA    HA VVRLLLE GADP
Sbjct:  137 VEMVRLMLHHHAYIDAESPNKSTPLMLASHYGHADVVRLLLEEGADP 183          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A7R8ZM20_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZM20_9CRUS)

HSP 1 Score: 49.7 bits (117), Expect = 1.750e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   52 AKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            A ++ + + +ET LHLACR SH  V+RLL+ENGADP
Sbjct:  567 AVVNVKLKSKETLLHLACRCSHVEVIRLLMENGADP 602          
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A7S4L584_GUITH (Hypothetical protein n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4L584_GUITH)

HSP 1 Score: 49.3 bits (116), Expect = 2.370e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   13 GHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
            GHV  V +L+    ++D+RN G  TPLHLA ++S   VVR L+  GAD
Sbjct:  401 GHVKAVEILIAGGCRLDKRNAGSLTPLHLAAQKSKPGVVRGLIAAGAD 448          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI8.290e-2796.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1IFD5_GUITC2.200e-848.08Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
C9SB95_VERA11.430e-650.91Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID... [more]
A0A816UPZ7_9BILA2.970e-637.70Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
UPI001F204A086.090e-651.06ankyrin repeat domain-containing protein n=1 Tax=H... [more]
A0A3Q1HK97_ANATE6.500e-640.74Cyclin-dependent kinase inhibitor 2C (p18, inhibit... [more]
A0A2E8HP91_9BACT1.270e-547.17Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A1V3S835_9BURK1.300e-551.06Uncharacterized protein n=2 Tax=Hydrogenophaga sp.... [more]
A0A7R8ZM20_9CRUS1.750e-558.33Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7S4L584_GUITH2.370e-547.92Hypothetical protein n=3 Tax=Geminigeraceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8182contigEcto-sp13_S_contig8182:1597..1761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score110.5
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D7G7Z2
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size165
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.094964-CDS-Ecto-sp13_S_contig8182:1596..17611681464090.094964-CDS-Ecto-sp13_S_contig8182:1596..1761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8182 1597..1761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8182.19533.1prot_Ecto-sp13_S_contig8182.19533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8182 1597..1761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8182.19533.1

>prot_Ecto-sp13_S_contig8182.19533.1 ID=prot_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENG
ADPR*
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mRNA from alignment at Ecto-sp13_S_contig8182:1597..1761-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8182.19533.1 ID=mRNA_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8182:1597..1761- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCACACGAAGGTCATGTAGACACCGTAAGCGTGCTCCTGCGCTACCA AGCAAAAATCGACCAAAGGAACAGGGGCCAGGAGACTCCGCTTCACTTAG CTTGCCGGCAAAGCCACGCGTCGGTGGTCCGCCTGCTGCTGGAGAACGGC GCAGACCCGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8182:1597..1761-

>mRNA_Ecto-sp13_S_contig8182.19533.1 ID=mRNA_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8182:1597..1761- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCACACGAAGGTCATGTAGACACCGTAAGCGTGCTCCTGCGCTACCA
AGCAAAAATCGACCAAAGGAACAGGGGCCAGGAGACTCCGCTTCACTTAG
CTTGCCGGCAAAGCCACGCGTCGGTGGTCCGCCTGCTGCTGGAGAACGGC
GCAGACCCGAGGTAA
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