mRNA_Ecto-sp13_S_contig8182.19533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI) HSP 1 Score: 109 bits (273), Expect = 8.290e-27 Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
ASHEGHVDTVSVLLRYQA+IDQRNRGQETPLHLACRQSHA VVRLLLENGADPR
Sbjct: 125 ASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPR 178
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: L1IFD5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFD5_GUITC) HSP 1 Score: 54.7 bits (130), Expect = 2.200e-8 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
A+H G VDTV +LLR A ID++N T LH+AC + + +V +LL +GAD
Sbjct: 12 AAHVGDVDTVRILLRQGANIDEKNYDGRTVLHIACAEGNYRMVEVLLNHGAD 63
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: C9SB95_VERA1 (Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID=C9SB95_VERA1) HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6 Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQA--KIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
AS G VD V +LL A I+ R + TPLH+AC HA +VRLLL +GADP
Sbjct: 807 ASRYGPVDIVQLLLENHAVDTINDTVREEITPLHIACMNGHADIVRLLLSHGADP 861
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A816UPZ7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816UPZ7_9BILA) HSP 1 Score: 51.6 bits (122), Expect = 2.970e-6 Identity = 23/61 (37.70%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQAKIDQRNRGQ---------ETPLHLACRQSHASVVRLLLENGAD 156
A+ EGH+D V VL+R+ A +++ +GQ +TPL +AC ++H +++R L+E+GA+
Sbjct: 10 AAEEGHLDVVEVLIRHGADVNRSPKGQVARDLHIENQTPLLMACTKNHETIIRHLIESGAN 70
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: UPI001F204A08 (ankyrin repeat domain-containing protein n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F204A08) HSP 1 Score: 50.4 bits (119), Expect = 6.090e-6 Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 19 VDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
V+ V ++L++ A ID + + TPL LA HA VVRLLLE GADP
Sbjct: 123 VEMVRLMLQHHAYIDAESPNKSTPLMLAAHYGHADVVRLLLEEGADP 169
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A3Q1HK97_ANATE (Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HK97_ANATE) HSP 1 Score: 50.1 bits (118), Expect = 6.500e-6 Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
A+ EG VDTV L+R+ A ++ ++ PLHLA ++ H VV+L++E A+P+
Sbjct: 79 AAREGFVDTVRALMRHGADVNVADQLGNLPLHLAAKEGHLEVVKLVIEQTANPQ 132
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A2E8HP91_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E8HP91_9BACT) HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5 Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 1 ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
AS +G V V LLR ++ + P+H+A RQ+ VVRLLLENGADP
Sbjct: 56 ASADGDVSRVRTLLRGDPRLVNAQYWYQFPIHMAVRQNRPDVVRLLLENGADP 108
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A1V3S835_9BURK (Uncharacterized protein n=2 Tax=Hydrogenophaga sp. A37 TaxID=1945864 RepID=A0A1V3S835_9BURK) HSP 1 Score: 49.7 bits (117), Expect = 1.300e-5 Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query: 19 VDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
V+ V ++L + A ID + + TPL LA HA VVRLLLE GADP
Sbjct: 137 VEMVRLMLHHHAYIDAESPNKSTPLMLASHYGHADVVRLLLEEGADP 183
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A7R8ZM20_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZM20_9CRUS) HSP 1 Score: 49.7 bits (117), Expect = 1.750e-5 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 52 AKIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
A ++ + + +ET LHLACR SH V+RLL+ENGADP
Sbjct: 567 AVVNVKLKSKETLLHLACRCSHVEVIRLLMENGADP 602
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Match: A0A7S4L584_GUITH (Hypothetical protein n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4L584_GUITH) HSP 1 Score: 49.3 bits (116), Expect = 2.370e-5 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 13 GHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
GHV V +L+ ++D+RN G TPLHLA ++S VVR L+ GAD
Sbjct: 401 GHVKAVEILIAGGCRLDKRNAGSLTPLHLAAQKSKPGVVRGLIAAGAD 448 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8182.19533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8182.19533.1 >prot_Ecto-sp13_S_contig8182.19533.1 ID=prot_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp ASHEGHVDTVSVLLRYQAKIDQRNRGQETPLHLACRQSHASVVRLLLENGback to top mRNA from alignment at Ecto-sp13_S_contig8182:1597..1761- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8182.19533.1 ID=mRNA_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8182:1597..1761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8182:1597..1761- >mRNA_Ecto-sp13_S_contig8182.19533.1 ID=mRNA_Ecto-sp13_S_contig8182.19533.1|Name=mRNA_Ecto-sp13_S_contig8182.19533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8182:1597..1761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |