mRNA_Ecto-sp13_S_contig8176.19524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8176.19524.1
Unique NamemRNA_Ecto-sp13_S_contig8176.19524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 9.410e-135
Identity = 201/249 (80.72%), Postives = 220/249 (88.35%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            PKD AVLPICSTG+VFI ID KTLKSWGL HSNDAW YKDV RPFSKEANIKCLVNK N R+ASSE GYLSSLL +GPDKCPWMIGESF TDGVQIKL LVT++HGRK+FSGSS+L E GY+KLPRA+AQ+ESLL+EGRGVYNISS++ESTSI ED+VVMSADPGQAKVINVSSATA  WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRKDQPYGVAIDRLSNEKKRTSC    I  C  W
Sbjct:  455 PKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRTSCLATFIQYCKSW 703          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53)

HSP 1 Score: 397 bits (1021), Expect = 4.560e-133
Identity = 197/249 (79.12%), Postives = 215/249 (86.35%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            PKD AVLPICSTG+VFI ID KTL SWGL HSNDAW YKDV RPFSKEAN+KCLVNK N R+ASSE GYLSSLLE+GPDKCPWMIGESF TDGVQIKL L T+EHGRK+FSGSS+L EEGY+KLPRAD Q+ESLL EGRGVYNISS+++STSI ED+VVMSADPGQAKVINVSSA A  WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRK QPYGVAIDRL NEKKRTSC    I  C  W
Sbjct:  229 PKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRW 477          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 8.000e-132
Identity = 200/249 (80.32%), Postives = 214/249 (85.94%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            PKD AVLPICSTGSVFI ID KTLKSWGL HSNDAW YKDV RPFSKEANIKCL NK N+R+ASSE GYLSSLL +GPDKCPWMIGESF TDGVQIKL LVT+EHGRK+F GS+QL E GY+KLPRAD Q+ESLL EGRGVYNISS+++S SI ED+VVMSADPGQAKVINVSSATA  WAR+DP +IL SS CVFG DYRRDTLASRSDKYE FRRKDQPYGVAIDRL NEKKRTSC    I  C  W
Sbjct:  391 PKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNISSLLDSPSIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIRYCKSW 639          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 398 bits (1023), Expect = 4.520e-131
Identity = 197/249 (79.12%), Postives = 216/249 (86.75%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            PKD AVLPICSTG+VFI ID KTL SWGL HSNDAW YKDV RPFSKEAN+KCLVNK N R+ASSE GYLSSLLE+GPDKCPWMIGESF TDGVQIKL L T+EHGRK+FSGSS+L E+GY+KLPRAD Q+ESLL EGRGVYNISS+++STSI ED+VVMSADPGQAKVINVSSATA  WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRK QPYGVAIDRL NEKKRTSC    I  C  W
Sbjct:  352 PKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRW 600          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 373 bits (957), Expect = 4.320e-121
Identity = 185/256 (72.27%), Postives = 211/256 (82.42%), Query Frame = 3
Query:   45 RGIHLRSPKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            RG  +  P+D +VLPICSTGSVFI +D KTLKSWGL HSNDAW YK+V RPFS+EANIKCL ++ NTR+ASSE+GYLSSLL+NGP KCPW +GESF TDGVQIKL LVT+EH R+SFSGSSQL EEGYSKLPRADA +E+LLE+GRGVYNISS+VES SI  DLVVMSADPGQAKVINV SAT+  W +KDP  ILK+S CVFG DYRR+TLAS SD+YE  RR+   YG+AIDRL +EKKRTSC    I  C  W
Sbjct:  354 RGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNISSLVESESIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDYRRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRTSCLTTFIQYCRSW 609          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 4.370e-70
Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 3
Query:  147 GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKV 572
            GL HSNDAW YKDV RPFSKEANIKCLVNK N R+ASSE GYLSSL  +GPDKCPWMIGESF TDGVQIKL LVT+EHGRK+FSGSS+L E GY+KLPRADAQ+ESLL+EGRGVYNISS++ESTSI ED++VMSADPGQAKV
Sbjct:  579 GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLESTSIREDVIVMSADPGQAKV 720          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835YVY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 6.610e-31
Identity = 92/285 (32.28%), Postives = 136/285 (47.72%), Query Frame = 3
Query:   45 RGIHLRSP-KDAAVLPICSTGSVFIRIDTKTLKSW---GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLEN-----------GPD----------KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSA-DPGQAKVINVSSATAGIWARKDPSLILKSS--RCVFGADYRRDTLASRSDKYEAFRRKDQ-PYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            R +H   P ++ + LP C TG+ F RID K ++      L      W Y+D    FSK ANI CL      ++A SE G   +L +             PD          +CP  +  SF TDGVQ+KL LVT         G   L + GY  L      +  +++ GRGVYN+ ++   +    D V++SA DPGQ ++++   A    W R + + ++ ++  R   G  YR DTLA  S++ E  RR+D   YG A+D L+ +++RTS   E    C  W
Sbjct:  334 RWLHDGKPAREMSPLPTCKTGAAFFRIDQKAIRKLFGRALKDCGGPWWYQDFFDVFSKRANIPCLRGSGG-QYARSEHGAFIALKKTQQQAAIRASLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSTPRTMREIIDIGRGVYNVEAITSESLSDLDGVIISAFDPGQVEIVSGVEALGEEWRRPNAAALMSTATRRGFAGDRYREDTLAKLSEEKEEKRRRDNGAYGGALDALTGQRRRTSALAEYAAYCRVW 617          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835Z996_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z996_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.980e-26
Identity = 82/256 (32.03%), Postives = 125/256 (48.83%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTLKSW--GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVES-TSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSR---CVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFWK 815
            PK  A LP+ S  + FIRID  T+K+    L      W Y     P+SK ANI+CL    N+ +  SERG ++++      +CPW++  +FETDG Q+KL L+T +       G   L + GY KL   +  ++++L+ GRGVYN + ++       +D+ +   DPG  K IN    T   W     +L   ++     V   D ++     RS   EA  R   PYG A+  L   +K++S   + I  C  W+
Sbjct:  352 PKILAPLPMASPKAAFIRIDKSTMKALFPSLDIQMGPWGYSAFLDPYSKLANIRCL---RNSTWGRSERGMMAAIGNQDMTECPWLVAPTFETDGHQMKLCLLTSDATNGGAPGVRYLNDAGY-KLRTKNVPLQTILDLGRGVYNDTGIIYGGREAVDDVYIGGIDPGIIKPINCIYGTGAAWRDMKGALTHDTAFEYVVVTEDDIKQMYNRGRSSHNEAVMRSRTPYGQALKTLWKYRKKSSRLQDIIAYCRTWR 603          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835Z6E8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.250e-25
Identity = 89/272 (32.72%), Postives = 129/272 (47.43%), Query Frame = 3
Query:   66 PKDAAVLPICSTGSVFIRIDTKTL-----KSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSL--LENGPD-KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIG--EDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFG---------ADYRRDTLASRSDKYEAFRRK-DQPYGVAIDRLSNEKKRTSCHVERIYVCGFWKLA 821
            P+  + LPI    + FIR+  K +     K        D W +K +  PFSK+A I  L N  N ++A SE G  ++L  +  G D   PWMIG SFETDG QI+LQL+T         G  QL + GY ++  AD  +E +LE G GVYN+  +  +  +    D+ V   DPGQ   +       G+  + +   I  ++   FG         A++   T   +S   E  RR+ D+PYG A+ +L  E+K T  +V     C  W  A
Sbjct:  249 PRIMSPLPINHNTATFIRVCKKAICELFPKLKVHIADGDPWWFKAIMDPFSKKAGIPRLRNAFN-KYARSEHGMFAALKMVREGKDLPVPWMIGPSFETDGKQIRLQLITSALEHPGVPGMLQLSKAGY-RVSFADTTLEEVLERGDGVYNLRHIHTAAGLEGFNDVTVTPVDPGQVATVK------GVKIKGEHWRIENAADITFGDHPDVTFSSAEWETKTFTRKSKDVEMLRRRADKPYGQALIQLQTERKNTCDYVTFTRYCRTWSAA 512          
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835ZCL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.750e-25
Identity = 85/276 (30.80%), Postives = 127/276 (46.01%), Query Frame = 3
Query:   69 KDAAVLPICSTGSVFIRIDTKTLKSW---GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLEN-----------GPD----------KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVV-ESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSS--RCVFGADYRRDTLASRSDKYEAFRRKDQP-YGVAIDRLSNEKKRTSCHVERIYVCGFW 812
            ++ + LP C TG+ F+RID K ++      L      W Y+D    FSK ANI CL      ++A SE G   +L +             PD          +CP  +  SF TDGVQ+KL LVT         G   L + GY  L      +  +++ G GVYN+ ++  ES S  + ++V + DPGQ             W R + + ++ ++  R   G  Y+  TLA  S++ E  RR+D   YG A+D L+ +++RTS   E    C  W
Sbjct:  119 REMSPLPTCKTGAAFVRIDQKAIRKLFGCALKDCGGPWWYQDFFDVFSKRANIPCLRGSGG-QYARSEHGAFIALKKTQQQAAIRATLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSMPRTMREIIDIGHGVYNVEAITSESLSDLDGVIVSAFDPGQE------------WRRPNAAALMSTATRRGFAGDRYQDGTLAKLSEQKEEKRRRDNAAYGGALDALTGQRRRTSALAEYTAYCRAW 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K772_9PHAE9.410e-13580.72DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
UPI0000161E534.560e-13379.12EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA56_9PHAE8.000e-13280.32DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
UPI0000161E544.520e-13179.12EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
Q6XLT6_9PHYC4.320e-12172.27FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LP46_ECTSI4.370e-7082.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVY1_9STRA6.610e-3132.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z996_9STRA3.980e-2632.03Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z6E8_9STRA2.250e-2532.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCL1_9STRA2.750e-2530.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8176contigEcto-sp13_S_contig8176:4037..4904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size868
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.443324-UTR-Ecto-sp13_S_contig8176:4036..43501681464089.443324-UTR-Ecto-sp13_S_contig8176:4036..4350Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8176 4037..4350 +
1681464089.474137-UTR-Ecto-sp13_S_contig8176:4863..49041681464089.474137-UTR-Ecto-sp13_S_contig8176:4863..4904Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8176 4864..4904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.462274-CDS-Ecto-sp13_S_contig8176:4350..48631681464089.462274-CDS-Ecto-sp13_S_contig8176:4350..4863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8176 4351..4863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8176.19524.1prot_Ecto-sp13_S_contig8176.19524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8176 4351..4863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8176.19524.1

>prot_Ecto-sp13_S_contig8176.19524.1 ID=prot_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIES
LLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARK
DPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEK
KRTSCHVERIYVCGFWKLAL*
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mRNA from alignment at Ecto-sp13_S_contig8176:4037..4904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8176.19524.1 ID=mRNA_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8176:4037..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTGCAGAGAGAAGAGGTATGAGTTCGTGAAGAATGAGCTTGGAGAGGA ATTCACCTACGCTCCCCCAAAGACGCTGCCGTGCTACCCATTTGCTCAAC GGGTTCGGTGTTCATCAGGATTGACACGAAGACGCTCAAGTCATGGGGGC TTTCGCATTCCAATGATGCCTGGCGGTACAAGGACGTTTGACGACCGTTT TCAAAAGAGGCCAACATCAAGTGTCTCGTCAACAAGGCGAACACCAGGTT TGCGTCAAGCGAGCGGGGGTATCTATCAAGTCTACTAGAAAATGGTCCGG ACAAGTGCCCCTGGATGATTGGCGAGAGTTTCGAGACGGACGGTGTACAG ATCAAGCTTCAGCTTGTGACAATGGAGCACGGAAGGAAATCTTTTTCTGG GTCTAGTCAGTTATACGAGGAAGGGTACAGCAAACTTCCCCGGGCTGACG CTCAGATAGAAAGCCTGTTGGAAGAGGGAAGAGGAGTGTACAACATTTCG AGTGTTGTGGAATCAACAAGTATTGGGGAAGATCTCGTTGTGATGTCCGC AGATCCGGGCCAGGCCAAGGTCATCAACGTGTCTTCCGCTACGGCTGGAA TATGGGCAAGAAAAGATCCAAGCCTTATTCTCAAGAGTTCGAGGTGTGTG TTCGGGGCCGACTATCGTCGTGATACTCTTGCGTCACGTTCAGACAAGTA CGAAGCATTTAGGCGGAAGGACCAGCCCTACGGAGTTGCCATCGATCGTC TTAGCAACGAGAAGAAAAGAACTTCGTGTCATGTTGAAAGAATCTACGTT TGTGGCTTTTGGAAACTTGCTCTCTGAATACCACGCGCCCGGATTTAACT GGTGGTCATTGGCTACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8176:4037..4904+

>mRNA_Ecto-sp13_S_contig8176.19524.1 ID=mRNA_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8176:4037..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGGCGAGAGTTTCGAGACGGACGGTGTACAGATCAAGCTTCAGCT
TGTGACAATGGAGCACGGAAGGAAATCTTTTTCTGGGTCTAGTCAGTTAT
ACGAGGAAGGGTACAGCAAACTTCCCCGGGCTGACGCTCAGATAGAAAGC
CTGTTGGAAGAGGGAAGAGGAGTGTACAACATTTCGAGTGTTGTGGAATC
AACAAGTATTGGGGAAGATCTCGTTGTGATGTCCGCAGATCCGGGCCAGG
CCAAGGTCATCAACGTGTCTTCCGCTACGGCTGGAATATGGGCAAGAAAA
GATCCAAGCCTTATTCTCAAGAGTTCGAGGTGTGTGTTCGGGGCCGACTA
TCGTCGTGATACTCTTGCGTCACGTTCAGACAAGTACGAAGCATTTAGGC
GGAAGGACCAGCCCTACGGAGTTGCCATCGATCGTCTTAGCAACGAGAAG
AAAAGAACTTCGTGTCATGTTGAAAGAATCTACGTTTGTGGCTTTTGGAA
ACTTGCTCTCTGA
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