mRNA_Ecto-sp13_S_contig8176.19524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 9.410e-135 Identity = 201/249 (80.72%), Postives = 220/249 (88.35%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
PKD AVLPICSTG+VFI ID KTLKSWGL HSNDAW YKDV RPFSKEANIKCLVNK N R+ASSE GYLSSLL +GPDKCPWMIGESF TDGVQIKL LVT++HGRK+FSGSS+L E GY+KLPRA+AQ+ESLL+EGRGVYNISS++ESTSI ED+VVMSADPGQAKVINVSSATA WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRKDQPYGVAIDRLSNEKKRTSC I C W
Sbjct: 455 PKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRTSCLATFIQYCKSW 703
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53) HSP 1 Score: 397 bits (1021), Expect = 4.560e-133 Identity = 197/249 (79.12%), Postives = 215/249 (86.35%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
PKD AVLPICSTG+VFI ID KTL SWGL HSNDAW YKDV RPFSKEAN+KCLVNK N R+ASSE GYLSSLLE+GPDKCPWMIGESF TDGVQIKL L T+EHGRK+FSGSS+L EEGY+KLPRAD Q+ESLL EGRGVYNISS+++STSI ED+VVMSADPGQAKVINVSSA A WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRK QPYGVAIDRL NEKKRTSC I C W
Sbjct: 229 PKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRW 477
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 8.000e-132 Identity = 200/249 (80.32%), Postives = 214/249 (85.94%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
PKD AVLPICSTGSVFI ID KTLKSWGL HSNDAW YKDV RPFSKEANIKCL NK N+R+ASSE GYLSSLL +GPDKCPWMIGESF TDGVQIKL LVT+EHGRK+F GS+QL E GY+KLPRAD Q+ESLL EGRGVYNISS+++S SI ED+VVMSADPGQAKVINVSSATA WAR+DP +IL SS CVFG DYRRDTLASRSDKYE FRRKDQPYGVAIDRL NEKKRTSC I C W
Sbjct: 391 PKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNISSLLDSPSIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIRYCKSW 639
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54) HSP 1 Score: 398 bits (1023), Expect = 4.520e-131 Identity = 197/249 (79.12%), Postives = 216/249 (86.75%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
PKD AVLPICSTG+VFI ID KTL SWGL HSNDAW YKDV RPFSKEAN+KCLVNK N R+ASSE GYLSSLLE+GPDKCPWMIGESF TDGVQIKL L T+EHGRK+FSGSS+L E+GY+KLPRAD Q+ESLL EGRGVYNISS+++STSI ED+VVMSADPGQAKVINVSSATA WA++DP +ILK+S CVFG DYRRDTLASRSD+YE FRRK QPYGVAIDRL NEKKRTSC I C W
Sbjct: 352 PKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRW 600
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC) HSP 1 Score: 373 bits (957), Expect = 4.320e-121 Identity = 185/256 (72.27%), Postives = 211/256 (82.42%), Query Frame = 3
Query: 45 RGIHLRSPKDAAVLPICSTGSVFIRIDTKTLKSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
RG + P+D +VLPICSTGSVFI +D KTLKSWGL HSNDAW YK+V RPFS+EANIKCL ++ NTR+ASSE+GYLSSLL+NGP KCPW +GESF TDGVQIKL LVT+EH R+SFSGSSQL EEGYSKLPRADA +E+LLE+GRGVYNISS+VES SI DLVVMSADPGQAKVINV SAT+ W +KDP ILK+S CVFG DYRR+TLAS SD+YE RR+ YG+AIDRL +EKKRTSC I C W
Sbjct: 354 RGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNISSLVESESIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDYRRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRTSCLTTFIQYCRSW 609
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 239 bits (610), Expect = 4.370e-70 Identity = 117/142 (82.39%), Postives = 129/142 (90.85%), Query Frame = 3
Query: 147 GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSADPGQAKV 572
GL HSNDAW YKDV RPFSKEANIKCLVNK N R+ASSE GYLSSL +GPDKCPWMIGESF TDGVQIKL LVT+EHGRK+FSGSS+L E GY+KLPRADAQ+ESLL+EGRGVYNISS++ESTSI ED++VMSADPGQAKV
Sbjct: 579 GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLESTSIREDVIVMSADPGQAKV 720
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835YVY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY1_9STRA) HSP 1 Score: 132 bits (331), Expect = 6.610e-31 Identity = 92/285 (32.28%), Postives = 136/285 (47.72%), Query Frame = 3
Query: 45 RGIHLRSP-KDAAVLPICSTGSVFIRIDTKTLKSW---GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLEN-----------GPD----------KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIGEDLVVMSA-DPGQAKVINVSSATAGIWARKDPSLILKSS--RCVFGADYRRDTLASRSDKYEAFRRKDQ-PYGVAIDRLSNEKKRTSCHVERIYVCGFW 812
R +H P ++ + LP C TG+ F RID K ++ L W Y+D FSK ANI CL ++A SE G +L + PD +CP + SF TDGVQ+KL LVT G L + GY L + +++ GRGVYN+ ++ + D V++SA DPGQ ++++ A W R + + ++ ++ R G YR DTLA S++ E RR+D YG A+D L+ +++RTS E C W
Sbjct: 334 RWLHDGKPAREMSPLPTCKTGAAFFRIDQKAIRKLFGRALKDCGGPWWYQDFFDVFSKRANIPCLRGSGG-QYARSEHGAFIALKKTQQQAAIRASLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSTPRTMREIIDIGRGVYNVEAITSESLSDLDGVIISAFDPGQVEIVSGVEALGEEWRRPNAAALMSTATRRGFAGDRYREDTLAKLSEEKEEKRRRDNGAYGGALDALTGQRRRTSALAEYAAYCRVW 617
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835Z996_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z996_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.980e-26 Identity = 82/256 (32.03%), Postives = 125/256 (48.83%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTLKSW--GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLENGPDKCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVES-TSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSR---CVFGADYRRDTLASRSDKYEAFRRKDQPYGVAIDRLSNEKKRTSCHVERIYVCGFWK 815
PK A LP+ S + FIRID T+K+ L W Y P+SK ANI+CL N+ + SERG ++++ +CPW++ +FETDG Q+KL L+T + G L + GY KL + ++++L+ GRGVYN + ++ +D+ + DPG K IN T W +L ++ V D ++ RS EA R PYG A+ L +K++S + I C W+
Sbjct: 352 PKILAPLPMASPKAAFIRIDKSTMKALFPSLDIQMGPWGYSAFLDPYSKLANIRCL---RNSTWGRSERGMMAAIGNQDMTECPWLVAPTFETDGHQMKLCLLTSDATNGGAPGVRYLNDAGY-KLRTKNVPLQTILDLGRGVYNDTGIIYGGREAVDDVYIGGIDPGIIKPINCIYGTGAAWRDMKGALTHDTAFEYVVVTEDDIKQMYNRGRSSHNEAVMRSRTPYGQALKTLWKYRKKSSRLQDIIAYCRTWR 603
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835Z6E8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E8_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.250e-25 Identity = 89/272 (32.72%), Postives = 129/272 (47.43%), Query Frame = 3
Query: 66 PKDAAVLPICSTGSVFIRIDTKTL-----KSWGLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSL--LENGPD-KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVVESTSIG--EDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSSRCVFG---------ADYRRDTLASRSDKYEAFRRK-DQPYGVAIDRLSNEKKRTSCHVERIYVCGFWKLA 821
P+ + LPI + FIR+ K + K D W +K + PFSK+A I L N N ++A SE G ++L + G D PWMIG SFETDG QI+LQL+T G QL + GY ++ AD +E +LE G GVYN+ + + + D+ V DPGQ + G+ + + I ++ FG A++ T +S E RR+ D+PYG A+ +L E+K T +V C W A
Sbjct: 249 PRIMSPLPINHNTATFIRVCKKAICELFPKLKVHIADGDPWWFKAIMDPFSKKAGIPRLRNAFN-KYARSEHGMFAALKMVREGKDLPVPWMIGPSFETDGKQIRLQLITSALEHPGVPGMLQLSKAGY-RVSFADTTLEEVLERGDGVYNLRHIHTAAGLEGFNDVTVTPVDPGQVATVK------GVKIKGEHWRIENAADITFGDHPDVTFSSAEWETKTFTRKSKDVEMLRRRADKPYGQALIQLQTERKNTCDYVTFTRYCRTWSAA 512
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Match: A0A835ZCL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL1_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.750e-25 Identity = 85/276 (30.80%), Postives = 127/276 (46.01%), Query Frame = 3
Query: 69 KDAAVLPICSTGSVFIRIDTKTLKSW---GLSHSNDAWRYKDV*RPFSKEANIKCLVNKANTRFASSERGYLSSLLEN-----------GPD----------KCPWMIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESLLEEGRGVYNISSVV-ESTSIGEDLVVMSADPGQAKVINVSSATAGIWARKDPSLILKSS--RCVFGADYRRDTLASRSDKYEAFRRKDQP-YGVAIDRLSNEKKRTSCHVERIYVCGFW 812
++ + LP C TG+ F+RID K ++ L W Y+D FSK ANI CL ++A SE G +L + PD +CP + SF TDGVQ+KL LVT G L + GY L + +++ G GVYN+ ++ ES S + ++V + DPGQ W R + + ++ ++ R G Y+ TLA S++ E RR+D YG A+D L+ +++RTS E C W
Sbjct: 119 REMSPLPTCKTGAAFVRIDQKAIRKLFGCALKDCGGPWWYQDFFDVFSKRANIPCLRGSGG-QYARSEHGAFIALKKTQQQAAIRATLCDPDAIAAFDATALRCPLFVDASFLTDGVQVKLHLVTSALDNGGAPGLWGLAKAGYRALGSMPRTMREIIDIGHGVYNVEAITSESLSDLDGVIVSAFDPGQE------------WRRPNAAALMSTATRRGFAGDRYQDGTLAKLSEQKEEKRRRDNAAYGGALDALTGQRRRTSALAEYTAYCRAW 381 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8176.19524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8176.19524.1 >prot_Ecto-sp13_S_contig8176.19524.1 ID=prot_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp MIGESFETDGVQIKLQLVTMEHGRKSFSGSSQLYEEGYSKLPRADAQIESback to top mRNA from alignment at Ecto-sp13_S_contig8176:4037..4904+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8176.19524.1 ID=mRNA_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8176:4037..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8176:4037..4904+ >mRNA_Ecto-sp13_S_contig8176.19524.1 ID=mRNA_Ecto-sp13_S_contig8176.19524.1|Name=mRNA_Ecto-sp13_S_contig8176.19524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8176:4037..4904+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |