mRNA_Ecto-sp13_S_contig81608.19505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81608.19505.1
Unique NamemRNA_Ecto-sp13_S_contig81608.19505.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig81608.19505.1 vs. uniprot
Match: D7FGW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.850e-32
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 EKAKKEAMLRKMKPGLRRSYFTAYHSFLMTARRTLGPRDRKETLRQAVEASLKDCKAREREGGPCEQPDRP 213
            EKAKK+ +LRKMKPGLRRSYFTA HSF MTA+R LGP DR+ETL QAV+ASLKDC+AREREGGP EQPDRP
Sbjct:   16 EKAKKDVLLRKMKPGLRRSYFTACHSFYMTAKRALGPHDRQETLAQAVDASLKDCEAREREGGPSEQPDRP 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81608.19505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGW1_ECTSI6.850e-3281.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81608contigEcto-sp13_S_contig81608:90..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.8445907-UTR-Ecto-sp13_S_contig81608:89..1101681464087.8445907-UTR-Ecto-sp13_S_contig81608:89..110Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81608 90..110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.8572156-CDS-Ecto-sp13_S_contig81608:110..2171681464087.8572156-CDS-Ecto-sp13_S_contig81608:110..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81608 111..217 +
1681464087.8682878-CDS-Ecto-sp13_S_contig81608:421..5061681464087.8682878-CDS-Ecto-sp13_S_contig81608:421..506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81608 422..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81608.19505.1prot_Ecto-sp13_S_contig81608.19505.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81608 111..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81608.19505.1

>prot_Ecto-sp13_S_contig81608.19505.1 ID=prot_Ecto-sp13_S_contig81608.19505.1|Name=mRNA_Ecto-sp13_S_contig81608.19505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MLRKMKPGLRRSYFTAYHSFLMTARRTLGPRDRKETLRQAVEASLKDCKA
REREGGPCEQPDRP
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mRNA from alignment at Ecto-sp13_S_contig81608:90..506+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81608.19505.1 ID=mRNA_Ecto-sp13_S_contig81608.19505.1|Name=mRNA_Ecto-sp13_S_contig81608.19505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81608:90..506+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAAAGCCAAAAAGGAGGCCATGCTGCGCAAAATGAAACCAGGACTACG
GAGGTCGTACTTCACGGCGTATCATTCTTTCTTAATGACGGCGAGACGCA
CTCTCGGCCCGCGCGACCGCAAGGAAACGTAAGGAAGCCATTGAAAAGCA
GTGAATCATTTACGATATTTTGCTGAAACCTGTCTTGCCTTAAAAGCAGC
AGTATTTAACAGGCTAACCCGCTGTGGTCACGATTGTAGAATATTCGCTT
GGATCCCTCGAAAGGCACTGAATTCTATGGCGGGACGTGTAAACAAGCGT
TGATGTACGCGGTGTGATAACCCTGATCGCAGGCTCAGACAGGCTGTGGA
AGCGTCTCTTAAGGACTGTAAGGCCAGGGAACGGGAGGGGGGCCCATGCG
AGCAGCCAGATCGGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81608:90..506+

>mRNA_Ecto-sp13_S_contig81608.19505.1 ID=mRNA_Ecto-sp13_S_contig81608.19505.1|Name=mRNA_Ecto-sp13_S_contig81608.19505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81608:90..506+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGCAAAATGAAACCAGGACTACGGAGGTCGTACTTCACGGCGTA
TCATTCTTTCTTAATGACGGCGAGACGCACTCTCGGCCCGCGCGACCGCA
AGGAAACGCTCAGACAGGCTGTGGAAGCGTCTCTTAAGGACTGTAAGGCC
AGGGAACGGGAGGGGGGCCCATGCGAGCAGCCAGATCGGCCT
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