prot_Ecto-sp13_S_contig8147.19490.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8147.19490.1
Unique Nameprot_Ecto-sp13_S_contig8147.19490.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length796
Homology
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 1.090e-171
Identity = 464/543 (85.45%), Postives = 470/543 (86.56%), Query Frame = 0
Query:    1 IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAPQETTPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSGGI-DATATXXXXXXXXXXXXXXXXXXXXXXKGENSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKENLKENATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHVLTPAQQAEVXXXXXXXXXXXAVEHAQSKAQAYRTVSIMEALREGAPPTSTLPQQHAQSSVPVMGSVAARQAAVXXXXXXXXXXXXXXXXXXXXARVPVASGEGTDGKEGGVASGXXXXXXXXXXXXXXGSKGSAT 542
            IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRF+GDKTVAEAGLSHGSILLFRSA QE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSG I DA A XXXXXXXXXXXXXXXXXXXXXXKGE SAPGWDGGPAAVVGR ASPPGEIPVVMDPAAQRRATCLALFQVQE +RQ QAKEAARAVAKKLAAE  LT+AKE LK+ AT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           LTPAQQAEV   X       AVEHAQSKAQAYRTVSIMEALREGAPP ST P    Q S P MGSV A+QAAV XXXXXXXXXXXXXXXX   ARVP ASGEGTDGK GGV+SG              GS GSAT
Sbjct:   70 IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFNGDKTVAEAGLSHGSILLFRSAQQEXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSGRIEDAVAAXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRVASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEAVLTSAKEKLKKIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------QFLTPAQQAEVAAAXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPMSTPPPAQLQPSAPAMGSVVAQQAAVAXXXXXXXXXXXXXXXXVP-ARVPAASGEGTDGKAGGVSSGGDDKLAGKGTGVDGGSTGSAT 601          
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 8.560e-134
Identity = 549/720 (76.25%), Postives = 556/720 (77.22%), Query Frame = 0
Query:   88 MAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAPQETTPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAA---------HATVTHAPKPAFPPARSGGIDATATXXXXXXXXXXXXXXXXXXXXXXKGENSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKENLKENATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHVLTPAQQAEVXXXXXXXXXXXAVEHAQSKAQAYRTVSIMEALREGAPPTSTLPQQHAQSSVP--VMGSVAARQAAVXXXXXXXXXXXXXXXXXXXXARVPVASGEGTDGKEGGVASGXXXXXXXXXXXXXXGSKGSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTCKSRVVEGTAKPGTGTSQPVVPQASSENGGKKEIDPSSGAAPGTARATRTSRSTAPAGDEGAPESVAAIPAEMQRRSSRKAAAVAALQIQSSARAGTXXXXXXXXXXXXXXXXXXXXXXSDGSLKSPRGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGEEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEVS 796
            MAHRTDRGCELVPIALSLAHLPEGL LEVFEQITPEEVRRFSGDKTVAEAGLSHGS+LLFRSA QETTPSP PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            HATVTHAPKPAFP            XXXXXXXXXXXXXXXXXXXXXXKGE SAPGWDGGPAAVVGRAASP GEIPVVMDPAAQRRATCLALFQVQE +RQ +AKEAARAVAK                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HVLTPAQQAEV XXX       AVEHAQSKAQAYRTVSIMEALREGAPPTST PQ          VMGSVAAR    XXXXXXXXXXXXXXXXXXXX                         XXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXX               K+   EGTAKP T TSQPVV Q SSENGGKKE+DPSSGAAPGTARATRTSRSTAPAGDEGAPESVA IPAEMQRRSSRKAAAV   QIQSSARAGT     XX               SDGS KSPR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAE++
Sbjct:    1 MAHRTDRGCELVPIALSLAHLPEGLKLEVFEQITPEEVRRFSGDKTVAEAGLSHGSVLLFRSAQQETTPSPCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATVTHAPKPAFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASPSGEIPVVMDPAAQRRATCLALFQVQENQRQQRAKEAARAVAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPPQXXXXXXXXXXVMGSVAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADANGGAAVVAGKTKN---EGTAKPSTATSQPVVRQVSSENGGKKEVDPSSGAAPGTARATRTSRSTAPAGDEGAPESVATIPAEMQRRSSRKAAAVXXQQIQSSARAGTRGGNSXXG--------------SDGSSKSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIA 684          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ04_ECTSI1.090e-17185.45USP7_ICP0_bdg domain-containing protein n=1 Tax=Ec... [more]
A0A6H5LAN8_9PHAE8.560e-13476.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 318..338
NoneNo IPR availableGENE3D3.10.20.90coord: 76..164
e-value: 1.3E-5
score: 27.2
IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domainPFAMPF12436USP7_ICP0_bdgcoord: 81..154
e-value: 6.6E-7
score: 28.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8147contigEcto-sp13_S_contig8147:570..6254 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8147.19490.1mRNA_Ecto-sp13_S_contig8147.19490.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8147 570..6254 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8147.19490.1 ID=prot_Ecto-sp13_S_contig8147.19490.1|Name=mRNA_Ecto-sp13_S_contig8147.19490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=796bp
IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICE
ILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVP
IALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSA
PQETTPSPSPPQQTAAAAPPPPVQQATPPLQQQQQQQKQEEQKPAVTVPP
ASTVSSVVPFNTAAAAAAAAAMAAHATVTHAPKPAFPPARSGGIDATATA
AASAALSSGPTATGGGGCGGGKGENSAPGWDGGPAAVVGRAASPPGEIPV
VMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKEN
LKENATSSSSSSAAAAATTASSAKTAEGESTAAAAAAAAAAAAAAAAEAA
EAPPPHVLTPAQQAEVAAAARVAAHAAAVEHAQSKAQAYRTVSIMEALRE
GAPPTSTLPQQHAQSSVPVMGSVAARQAAVAAAASAASARVSAPPPAAVP
ARVPVASGEGTDGKEGGVASGGDGKQAGEGTGVDGGSKGSATTTTTASAP
GKKSNGEESENTASSEGSSTDCSSSSGGSSSSTCKSRVVEGTAKPGTGTS
QPVVPQASSENGGKKEIDPSSGAAPGTARATRTSRSTAPAGDEGAPESVA
AIPAEMQRRSSRKAAAVAALQIQSSARAGTRGGNSGSGSGSGSGGVSGGV
SGSDGSLKSPRGGDGDDGGSGQKRQAEAGEGGGGSRKSAKTTDARGGGVG
EEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024729USP7_ICP0-binding_dom