mRNA_Ecto-sp13_S_contig8147.19490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8147.19490.1
Unique NamemRNA_Ecto-sp13_S_contig8147.19490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 1.090e-171
Identity = 464/543 (85.45%), Postives = 470/543 (86.56%), Query Frame = 1
Query:    1 IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAPQETTPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSGGI-DATATXXXXXXXXXXXXXXXXXXXXXXKGENSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKENLKENATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHVLTPAQQAEVXXXXXXXXXXXAVEHAQSKAQAYRTVSIMEALREGAPPTSTLPQQHAQSSVPVMGSVAARQAAVXXXXXXXXXXXXXXXXXXXXARVPVASGEGTDGKEGGVASGXXXXXXXXXXXXXXGSKGSAT 1626
            IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRF+GDKTVAEAGLSHGSILLFRSA QE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSG I DA A XXXXXXXXXXXXXXXXXXXXXXKGE SAPGWDGGPAAVVGR ASPPGEIPVVMDPAAQRRATCLALFQVQE +RQ QAKEAARAVAKKLAAE  LT+AKE LK+ AT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           LTPAQQAEV   X       AVEHAQSKAQAYRTVSIMEALREGAPP ST P    Q S P MGSV A+QAAV XXXXXXXXXXXXXXXX   ARVP ASGEGTDGK GGV+SG              GS GSAT
Sbjct:   70 IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFNGDKTVAEAGLSHGSILLFRSAQQEXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAHATVTHAPKPAFPPARSGRIEDAVAAXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRVASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEAVLTSAKEKLKKIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------QFLTPAQQAEVAAAXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPMSTPPPAQLQPSAPAMGSVVAQQAAVAXXXXXXXXXXXXXXXXVP-ARVPAASGEGTDGKAGGVSSGGDDKLAGKGTGVDGGSTGSAT 601          
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 8.560e-134
Identity = 549/720 (76.25%), Postives = 556/720 (77.22%), Query Frame = 1
Query:  262 MAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAPQETTPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAA---------HATVTHAPKPAFPPARSGGIDATATXXXXXXXXXXXXXXXXXXXXXXKGENSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKENLKENATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHVLTPAQQAEVXXXXXXXXXXXAVEHAQSKAQAYRTVSIMEALREGAPPTSTLPQQHAQSSVP--VMGSVAARQAAVXXXXXXXXXXXXXXXXXXXXARVPVASGEGTDGKEGGVASGXXXXXXXXXXXXXXGSKGSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTCKSRVVEGTAKPGTGTSQPVVPQASSENGGKKEIDPSSGAAPGTARATRTSRSTAPAGDEGAPESVAAIPAEMQRRSSRKAAAVAALQIQSSARAGTXXXXXXXXXXXXXXXXXXXXXXSDGSLKSPRGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGEEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEVS 2388
            MAHRTDRGCELVPIALSLAHLPEGL LEVFEQITPEEVRRFSGDKTVAEAGLSHGS+LLFRSA QETTPSP PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            HATVTHAPKPAFP            XXXXXXXXXXXXXXXXXXXXXXKGE SAPGWDGGPAAVVGRAASP GEIPVVMDPAAQRRATCLALFQVQE +RQ +AKEAARAVAK                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HVLTPAQQAEV XXX       AVEHAQSKAQAYRTVSIMEALREGAPPTST PQ          VMGSVAAR    XXXXXXXXXXXXXXXXXXXX                         XXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXX               K+   EGTAKP T TSQPVV Q SSENGGKKE+DPSSGAAPGTARATRTSRSTAPAGDEGAPESVA IPAEMQRRSSRKAAAV   QIQSSARAGT     XX               SDGS KSPR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAE++
Sbjct:    1 MAHRTDRGCELVPIALSLAHLPEGLKLEVFEQITPEEVRRFSGDKTVAEAGLSHGSVLLFRSAQQETTPSPCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATVTHAPKPAFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASPSGEIPVVMDPAAQRRATCLALFQVQENQRQQRAKEAARAVAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPPQXXXXXXXXXXVMGSVAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADANGGAAVVAGKTKN---EGTAKPSTATSQPVVRQVSSENGGKKEVDPSSGAAPGTARATRTSRSTAPAGDEGAPESVATIPAEMQRRSSRKAAAVXXQQIQSSARAGTRGGNSXXG--------------SDGSSKSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIA 684          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8147.19490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ04_ECTSI1.090e-17185.45USP7_ICP0_bdg domain-containing protein n=1 Tax=Ec... [more]
A0A6H5LAN8_9PHAE8.560e-13476.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8147contigEcto-sp13_S_contig8147:570..6254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2388
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionICP0-binding domain of Ubiquitin-specific protease 7
Ec32 orthologEc-15_001430.1
Cds size2388
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8147.19490.1prot_Ecto-sp13_S_contig8147.19490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8147 570..6254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.840087-CDS-Ecto-sp13_S_contig8147:569..6351681464086.840087-CDS-Ecto-sp13_S_contig8147:569..635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 570..635 -
1681464086.8513677-CDS-Ecto-sp13_S_contig8147:1284..14161681464086.8513677-CDS-Ecto-sp13_S_contig8147:1284..1416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 1285..1416 -
1681464086.862688-CDS-Ecto-sp13_S_contig8147:1679..29181681464086.862688-CDS-Ecto-sp13_S_contig8147:1679..2918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 1680..2918 -
1681464086.8799205-CDS-Ecto-sp13_S_contig8147:3607..42131681464086.8799205-CDS-Ecto-sp13_S_contig8147:3607..4213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 3608..4213 -
1681464086.8925955-CDS-Ecto-sp13_S_contig8147:4628..48231681464086.8925955-CDS-Ecto-sp13_S_contig8147:4628..4823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 4629..4823 -
1681464086.9041142-CDS-Ecto-sp13_S_contig8147:6104..62541681464086.9041142-CDS-Ecto-sp13_S_contig8147:6104..6254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8147 6105..6254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8147.19490.1

>prot_Ecto-sp13_S_contig8147.19490.1 ID=prot_Ecto-sp13_S_contig8147.19490.1|Name=mRNA_Ecto-sp13_S_contig8147.19490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=796bp
IQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICE
ILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVP
IALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSA
PQETTPSPSPPQQTAAAAPPPPVQQATPPLQQQQQQQKQEEQKPAVTVPP
ASTVSSVVPFNTAAAAAAAAAMAAHATVTHAPKPAFPPARSGGIDATATA
AASAALSSGPTATGGGGCGGGKGENSAPGWDGGPAAVVGRAASPPGEIPV
VMDPAAQRRATCLALFQVQETKRQLQAKEAARAVAKKLAAETALTAAKEN
LKENATSSSSSSAAAAATTASSAKTAEGESTAAAAAAAAAAAAAAAAEAA
EAPPPHVLTPAQQAEVAAAARVAAHAAAVEHAQSKAQAYRTVSIMEALRE
GAPPTSTLPQQHAQSSVPVMGSVAARQAAVAAAASAASARVSAPPPAAVP
ARVPVASGEGTDGKEGGVASGGDGKQAGEGTGVDGGSKGSATTTTTASAP
GKKSNGEESENTASSEGSSTDCSSSSGGSSSSTCKSRVVEGTAKPGTGTS
QPVVPQASSENGGKKEIDPSSGAAPGTARATRTSRSTAPAGDEGAPESVA
AIPAEMQRRSSRKAAAVAALQIQSSARAGTRGGNSGSGSGSGSGGVSGGV
SGSDGSLKSPRGGDGDDGGSGQKRQAEAGEGGGGSRKSAKTTDARGGGVG
EEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEVS
back to top

mRNA from alignment at Ecto-sp13_S_contig8147:570..6254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8147.19490.1 ID=mRNA_Ecto-sp13_S_contig8147.19490.1|Name=mRNA_Ecto-sp13_S_contig8147.19490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8147:570..6254- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGAAGGTCTCGGAGCTCACTGGGGTCCCGCTGGTGAGCTGCCGCCC TTGGCTGTGCATGCCTCGCAAGAACAGGAACGGTCCCCCCGGTCCCCTTC GGCCGGCCGCCGCCCTCCTGCCGCAGCACCTCCAGATGAGCATCTGCGAG GTACGGAAGTGATGATGTAATGAGAGAGCACTTTTAAAAAGACGAAGAGG CACTCCTATCTACGTATCTGTGCAGAGTTTCTCGGGGAGAGCCAAGAGAA AAACAGGCATGGTTGTCGTGCAGCCTTGTGGGTGCGAAGGCCAAGATGGA GCCGTGTTTGATTGCGTCCTGCCCATGGTTGACTGCAGAACGCGCCCGTT CTCTCTTAGGAAACCCTTGCGTTTCCCGAGGTTCGCCTCCTTGTTTTCTC AATCAAGGGAATCCAAACACTGGTAAGTCTCGCGTTTCCCGAGGTTCGCC TCCTTGTTTTCTCAATCAAGGGAATCCAAACATCGACTGGTACGTCTCTC CGAACACACACACATGTGTATCCCCCGGTCTCTCTGAACTATCCCACGTA CCCCCCCCCCGTCTACCGGAACTAGCCTACGTACCCCTCCCCCCGTCCCT CGGAACTAACCCTCGTACCCCTCCCCCCGTTCCCCGGAACACCCCCCCTC CCCCCCCCTCGTCTCTCCGAACGAACACACGTACGTACCCCCCTGCCTCT CGGAACTGACTGACACACGCACGTACCCACCCCCCGTCTCTCCCAGGCTC TAGGAGATCGCCCCCAGTACCACATCTACCTGGAAGAGGTGGACACACTT CCGGACGTCTGGGCCCGGCGCCGCGCCTTGCCGGGGGAGTTGCCCGCCGT GGAGGCCGGGCAACTGCTGCTCGCCGGGAGGGCTTACGCGAACCTGCCGA CCGAGGTCTGCCTGGTGTTCCTCAAGATCGACCGGAGGGTGAGTACTGTA GTTTTAAAAAGGAAAATAAATCCGGCAGGAGGGACAAGAGAGAGAAAATG GTGAAGGTGTGTAGATGTAGTGAACAAAACGGAGAGCTTGGGCCTGCGAG GCTGGTGTTCCTCGGGATGGGGCCGAGGGTATTTGCAGGAATTTCACGTG AGGACATAGTTGCACGCACACGGGGACCGATCTAAAGAGCAGAAAAGAAC ATGGATGAAATTTTAGTTTGTTGCAGGTCGACCCTGAAAGTCACCAACAG CGGCAGGTTAACTGACGAAATGCCCCCGCCTCCCCCTGACGATTGGCCAT CGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGA TCAATNNNNNNNNNNGGGTTAGATGTCTTCTTCCTATCGTGGACTTTGGA ATATTGCTCAACCCGCTAAGACAAGAAAAAATAAAGAGTCACCCCCCCCC CCCCCCCCGCGTTATATTTCTCCTCTGACAGATACTTGCGGCGCACGCAG CAACCAAGCAAGACCAGCCGCCCCTCTCCATCCACTACCCGCCGGTCGTC TCCGGGAGCAACGAGCCGGAGTTCGTCTTCGTCGGGAAGGCGATGGCGCA CAGGACGGACCGGGGCTGCGAGCTTGTGCCCATCGCGTTGAGCCTCGCAC ACCTCCCGGAGGGCCTCAACCTCGAGGTGAAAATTTTACGTGTTTGCCTT CGCACGCTCTTGCTGTCGCGCGCGCGCGGGAGGGGGATTCTTGTCCCTCC ACTTTCGCTGTTCTGTTTTTTCTGTCATGCGTTTACTTAGCTTTCCGCCC TCCCTACAACAGTCAGCAGCGGCTGCCGCAAACAGCTCTTCACGTGTAGT CTAGAGGCTGACTCACATGAGTTTCTTTTTCTTTCCACCTCGTTAACACG GTTCGTTGCTCTCCCTCGATGTTGCCCCCCCCTGGAGATGATCTTCCGTA TCCCCTCCCTCTCAACGCTCCGGAAAATGAACCTTTTGCAACAACCACGT TAGAGTTGCTTTATTCTCGGAACTCCCCCCGACACAAACCCTCGAAAATC ACATCCTAGACCCGTTCTTGCGATGAACAACGCCGAGACAGGTGTTTGAG CAGATCACCCCGGAGGAAGTCCGCCGCTTCAGCGGAGACAAGACGGTCGC CGAGGCCGGCCTGTCCCACGGCTCCATCCTCCTTTTCCGCAGCGCCCCGC AAGAAACGACTCCGTCACCCTCCCCCCCCCAGCAGACGGCGGCGGCGGCG CCCCCCCCCCCGGTGCAGCAGGCTACGCCGCCGCTGCAGCAGCAGCAACA GCAGCAGAAGCAGGAGGAGCAGAAGCCCGCGGTAACCGTACCCCCGGCCT CGACAGTGTCCTCCGTGGTCCCGTTCAACACGGCGGCGGCTGCGGCCGCG GCGGCGGCGATGGCGGCTCACGCCACCGTAACCCACGCCCCCAAGCCGGC CTTTCCCCCGGCGAGGAGCGGCGGGATAGACGCCACCGCCACCGCCGCCG CCTCCGCCGCCCTTAGCAGCGGGCCTACCGCTACCGGTGGCGGCGGCTGC GGCGGTGGAAAAGGCGAGAATAGCGCCCCGGGGTGGGATGGGGGCCCCGC AGCGGTGGTAGGGCGGGCGGCGTCCCCCCCCGGAGAGATCCCGGTCGTGA TGGACCCCGCGGCCCAGAGGCGGGCGACGTGTCTTGCGCTGTTCCAGGTG AATGTGTATATATTCCGTGGTTATACCTCGAACGGGTAGTATTTCGGTGT TTATATTCATCTTTCCATATGCCGGTTGCCGTTTTTTTTATCGGCAGGCG CTTCGTAGAACAGCATTCTAACCGCCTCCCAACCGCTGGAAACCTCGCGC GGTCATCTTGAGAGAAGAGCAGAGCCCTGCGCTTGATATGTGAACAGCCC GTGGAGGTGAATACAGCAGTGACGTGGCATCTCGAGTTATCAGAAGCTGC ACGTTTATCTCTGAAACCCGCAAGCCGTTCTCTGAAGGTCGACTCATTTC CGTGCTGCAAAGAAAGGCGTCATGGTCTCCGTGCAGTAGTAGCGCACTCC CTTTTACTGGTGTTTTTGTGTGGAGAACCCGGGCGCTCTTCAGCGCTGTT CTCTCGGCGAAGCACCATCAAAAAGGCGAGGCGGGTCGTGCGTCTCTTGC ATCGTTATGGCGTCTCCTATCCCGTTGCGCGTTGCAACGACGAGAGCACC TCATCCTTGTACACCCTAGGGCCTGTTTTGCCTCCCTCCTCTTCCCTGTA GTAGTTTTTCGCTACAGACACAAGACACGCTCGCTCAAGACCCCGCACCC TTGTTGTCAGCTTGAGCTTAATCGGGAGACATTTTCCTTCTCCGTCTCCC CTGGTTCTCTCACCTGTTTTCTGGGGTCCCCGCTAGGTCCAGGAGACCAA GCGGCAGCTGCAGGCGAAAGAAGCAGCGAGGGCGGTCGCGAAGAAGCTAG CGGCAGAGACGGCGCTCACGGCGGCCAAAGAAAATCTTAAGGAGAACGCC ACCTCCTCCTCATCATCATCAGCGGCGGCGGCGGCGACGACGGCGTCGTC AGCCAAGACCGCCGAGGGGGAGAGCACGGCGGCAGCGGCGGCTGCGGCGG CTGCGGCGGCCGCCGCGGCGGCGGCGGAGGCGGCGGAGGCGCCCCCGCCG CACGTCCTGACCCCCGCGCAGCAGGCGGAAGTGGCGGCGGCGGCGAGGGT GGCTGCGCACGCCGCCGCGGTGGAACACGCCCAGTCGAAGGCCCAGGCCT ACCGAACCGTGTCGATTATGGAAGCCCTCCGAGAAGGAGCCCCGCCGACG TCGACGCTGCCGCAGCAGCATGCGCAGTCGTCGGTACCGGTGATGGGAAG CGTTGCAGCGCGACAGGCGGCGGTGGCAGCAGCGGCGTCGGCGGCGTCGG CTCGGGTTTCAGCACCACCGCCGGCCGCCGTCCCCGCCCGCGTTCCGGTT GCGTCCGGCGAGGGTACGGATGGGAAAGAAGGCGGCGTTGCTTCGGGAGG CGACGGCAAGCAAGCAGGCGAGGGGACAGGGGTAGATGGGGGCTCCAAGG GAAGCGCCACCACCACTACGACCGCGTCCGCTCCCGGTAAAAAGTCCAAT GGCGAGGAGAGCGAGAACACTGCCAGCAGCGAAGGAAGCAGCACAGACTG CAGCAGCAGCAGCGGCGGCAGCAGCAGCAGCACCTGCAAGAGCCGAGTTG TAGAGGGCACAGCCAAACCCGGCACCGGGACCTCGCAGCCGGTGGTTCCG CAAGCATCATCAGAGAACGGAGGAAAGAAGGAGATCGACCCCAGCAGTGG CGCCGCTCCGGGCACGGCAAGGGCGACTCGGACTTCGAGGAGCACGGCGC CAGCCGGGGACGAGGGCGCACCGGAGTCGGTGGCGGCGATACCGGCCGAG ATGCAGCGGCGGTCGTCGAGAAAGGCGGCCGCCGTTGCCGCGCTGCAGAT CCAGAGCTCGGCGCGCGCGGGGACTAGGGGCGGTAACAGCGGCAGCGGCA GCGGCAGCGGCAGCGGCGGCGTGAGTGGCGGCGTGAGCGGCAGCGATGGT AGCTTGAAGAGCCCTCGTGGCGGCGACGGTGATGACGGTGGTAGCGGCCA GAAACGCCAGGCGGAAGCGGGGGAGGTGAGTCAGGGGCACGCGGGGGAGC CTAGTGGTGGAAGCACCGGGGGGTGGGAAGAAGGGAGGGAGAAGGGGGGG GGTTAGAAAGGTACGCGTGATTAGGCTACAGAGGCGTACCGATATTGCTC TATGCTACATATACCTACAACGGTGAAATCAGCAGCAGCCCGTTAGACAG AGCACGTACACCTGGCAACGTTCAAGTACCCCATGCTGAAGGATGGTTCT GGCTTCAACTGAAACCTTTTTCGACCGCACGAAAGCAGGGAGGAGGAGGG TCGAGGAAGAGCGCAAAGACGACGGACGCGCGTGGAGGCGGGGTCGGGGA GGAGGCTGCCCCGGCGGCGAGCCCCGCGCCTTCGGCGGACCTTGCGTCGT TTATTGCCCAGCTGATGCACGTGAGTGGCCGGCCGCCCACAGAAAAAAAC GGAGTACTTTCGCCCTGTAGTAGTGTACTTTTTACAACAGCTAAAAACAT ACCTCATGCCTTTGTAGTTATCCTTCTATACTCGTCCCCAAGCGTACTTG AAAGATGTACACATAAACAACTCTTGTTAGAGCATAGAACCATGAATCAA AACAGCTCCATACGAAAGAAAAATACACACTGGTATCTAATATGTTCGTT GCTACTCTCCGGGTGGTTTTGCGGAGAGGCGGCGTTGCCCACCCCGTGTT GTTGTTCCGCCTGCAGTCAAAACCTCCCTTGGTCGCCTGCAGTCAAAACC TCCCTTGGTCGTTGTCGTGACTTTGGAACCTGCTTGTTGGGGTCGTGGAT TGCTGTTTCCAGGGATAACGCACTACATAATAGCTCCGGTAAGCAGCGGT GCAGGTTGTGTGGTTTCCCTTGAACAGACAGGAAACAGCATCACGGCCTA ACGAACCTCGGGCGCCTGTCTCATGCACGGAGACCAAAAAAGCAATACCA CCGATAACATTTGTAATTTTTCTTACAATATTCCACGACGTATTGCCGAC AAATCTCTCGCTTTTGCTGCTGCTCTCTTGATGTTGTCGCGCCTACAACC CGGAACCCCAACGGAGCAGGTGCCGGGGTTCACGATGGAGAAGTGCATGG AGCTCACCAGGTCCAAAGAGAGGGCAGAGGTGAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8147:570..6254-

>mRNA_Ecto-sp13_S_contig8147.19490.1 ID=mRNA_Ecto-sp13_S_contig8147.19490.1|Name=mRNA_Ecto-sp13_S_contig8147.19490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8147:570..6254- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCAGAAGGTCTCGGAGCTCACTGGGGTCCCGCTGGTGAGCTGCCGCCC
TTGGCTGTGCATGCCTCGCAAGAACAGGAACGGTCCCCCCGGTCCCCTTC
GGCCGGCCGCCGCCCTCCTGCCGCAGCACCTCCAGATGAGCATCTGCGAG
ATACTTGCGGCGCACGCAGCAACCAAGCAAGACCAGCCGCCCCTCTCCAT
CCACTACCCGCCGGTCGTCTCCGGGAGCAACGAGCCGGAGTTCGTCTTCG
TCGGGAAGGCGATGGCGCACAGGACGGACCGGGGCTGCGAGCTTGTGCCC
ATCGCGTTGAGCCTCGCACACCTCCCGGAGGGCCTCAACCTCGAGGTGTT
TGAGCAGATCACCCCGGAGGAAGTCCGCCGCTTCAGCGGAGACAAGACGG
TCGCCGAGGCCGGCCTGTCCCACGGCTCCATCCTCCTTTTCCGCAGCGCC
CCGCAAGAAACGACTCCGTCACCCTCCCCCCCCCAGCAGACGGCGGCGGC
GGCGCCCCCCCCCCCGGTGCAGCAGGCTACGCCGCCGCTGCAGCAGCAGC
AACAGCAGCAGAAGCAGGAGGAGCAGAAGCCCGCGGTAACCGTACCCCCG
GCCTCGACAGTGTCCTCCGTGGTCCCGTTCAACACGGCGGCGGCTGCGGC
CGCGGCGGCGGCGATGGCGGCTCACGCCACCGTAACCCACGCCCCCAAGC
CGGCCTTTCCCCCGGCGAGGAGCGGCGGGATAGACGCCACCGCCACCGCC
GCCGCCTCCGCCGCCCTTAGCAGCGGGCCTACCGCTACCGGTGGCGGCGG
CTGCGGCGGTGGAAAAGGCGAGAATAGCGCCCCGGGGTGGGATGGGGGCC
CCGCAGCGGTGGTAGGGCGGGCGGCGTCCCCCCCCGGAGAGATCCCGGTC
GTGATGGACCCCGCGGCCCAGAGGCGGGCGACGTGTCTTGCGCTGTTCCA
GGTCCAGGAGACCAAGCGGCAGCTGCAGGCGAAAGAAGCAGCGAGGGCGG
TCGCGAAGAAGCTAGCGGCAGAGACGGCGCTCACGGCGGCCAAAGAAAAT
CTTAAGGAGAACGCCACCTCCTCCTCATCATCATCAGCGGCGGCGGCGGC
GACGACGGCGTCGTCAGCCAAGACCGCCGAGGGGGAGAGCACGGCGGCAG
CGGCGGCTGCGGCGGCTGCGGCGGCCGCCGCGGCGGCGGCGGAGGCGGCG
GAGGCGCCCCCGCCGCACGTCCTGACCCCCGCGCAGCAGGCGGAAGTGGC
GGCGGCGGCGAGGGTGGCTGCGCACGCCGCCGCGGTGGAACACGCCCAGT
CGAAGGCCCAGGCCTACCGAACCGTGTCGATTATGGAAGCCCTCCGAGAA
GGAGCCCCGCCGACGTCGACGCTGCCGCAGCAGCATGCGCAGTCGTCGGT
ACCGGTGATGGGAAGCGTTGCAGCGCGACAGGCGGCGGTGGCAGCAGCGG
CGTCGGCGGCGTCGGCTCGGGTTTCAGCACCACCGCCGGCCGCCGTCCCC
GCCCGCGTTCCGGTTGCGTCCGGCGAGGGTACGGATGGGAAAGAAGGCGG
CGTTGCTTCGGGAGGCGACGGCAAGCAAGCAGGCGAGGGGACAGGGGTAG
ATGGGGGCTCCAAGGGAAGCGCCACCACCACTACGACCGCGTCCGCTCCC
GGTAAAAAGTCCAATGGCGAGGAGAGCGAGAACACTGCCAGCAGCGAAGG
AAGCAGCACAGACTGCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGCACCT
GCAAGAGCCGAGTTGTAGAGGGCACAGCCAAACCCGGCACCGGGACCTCG
CAGCCGGTGGTTCCGCAAGCATCATCAGAGAACGGAGGAAAGAAGGAGAT
CGACCCCAGCAGTGGCGCCGCTCCGGGCACGGCAAGGGCGACTCGGACTT
CGAGGAGCACGGCGCCAGCCGGGGACGAGGGCGCACCGGAGTCGGTGGCG
GCGATACCGGCCGAGATGCAGCGGCGGTCGTCGAGAAAGGCGGCCGCCGT
TGCCGCGCTGCAGATCCAGAGCTCGGCGCGCGCGGGGACTAGGGGCGGTA
ACAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGTGAGTGGCGGCGTG
AGCGGCAGCGATGGTAGCTTGAAGAGCCCTCGTGGCGGCGACGGTGATGA
CGGTGGTAGCGGCCAGAAACGCCAGGCGGAAGCGGGGGAGGGAGGAGGAG
GGTCGAGGAAGAGCGCAAAGACGACGGACGCGCGTGGAGGCGGGGTCGGG
GAGGAGGCTGCCCCGGCGGCGAGCCCCGCGCCTTCGGCGGACCTTGCGTC
GTTTATTGCCCAGCTGATGCACGTGCCGGGGTTCACGATGGAGAAGTGCA
TGGAGCTCACCAGGTCCAAAGAGAGGGCAGAGGTGAGC
back to top