mRNA_Ecto-sp13_S_contig81394.19481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81394.19481.1
Unique NamemRNA_Ecto-sp13_S_contig81394.19481.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.970e-12
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV 114
            GGGVLSLPFALRRSG+V GAILLLLTAFATDFTVFTLV
Sbjct:   35 GGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLV 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.510e-6
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV 114
            GGGVLSLPFAL+R+G++ G  LL+LTA A+DF+V+ LV
Sbjct:   38 GGGVLSLPFALQRAGLIPGLALLVLTALASDFSVYILV 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW38_ECTSI8.970e-1294.74Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA8.510e-665.79Transmembrane amino acid transporter protein-domai... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81394contigEcto-sp13_S_contig81394:65..181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score65.5
Seed ortholog evalue6.4e-09
Seed eggNOG ortholog2880.D7FW38
Model size117
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
Cds size117
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.2039063-CDS-Ecto-sp13_S_contig81394:64..1811681464086.2039063-CDS-Ecto-sp13_S_contig81394:64..181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81394 65..181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81394.19481.1prot_Ecto-sp13_S_contig81394.19481.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81394 65..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81394.19481.1

>prot_Ecto-sp13_S_contig81394.19481.1 ID=prot_Ecto-sp13_S_contig81394.19481.1|Name=mRNA_Ecto-sp13_S_contig81394.19481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV*
back to top

mRNA from alignment at Ecto-sp13_S_contig81394:65..181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81394.19481.1 ID=mRNA_Ecto-sp13_S_contig81394.19481.1|Name=mRNA_Ecto-sp13_S_contig81394.19481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81394:65..181- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGTGTCCTCTCGCTCCCGTTCGCCTTGAGGAGGAGCGGGATCGT
CGCCGGCGCCATTCTTCTCTTGCTCACAGCTTTCGCTACCGACTTCACCG
TCTTCACGTTGGTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81394:65..181-

>mRNA_Ecto-sp13_S_contig81394.19481.1 ID=mRNA_Ecto-sp13_S_contig81394.19481.1|Name=mRNA_Ecto-sp13_S_contig81394.19481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81394:65..181- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGTGTCCTCTCGCTCCCGTTCGCCTTGAGGAGGAGCGGGATCGT
CGCCGGCGCCATTCTTCTCTTGCTCACAGCTTTCGCTACCGACTTCACCG
TCTTCACGTTGGTGTGA
back to top