prot_Ecto-sp13_S_contig81394.19481.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig81394.19481.1
Unique Nameprot_Ecto-sp13_S_contig81394.19481.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length39
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.970e-12
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV 38
            GGGVLSLPFALRRSG+V GAILLLLTAFATDFTVFTLV
Sbjct:   35 GGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLV 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.510e-6
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0 
Query:    1 GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV 38
            GGGVLSLPFAL+R+G++ G  LL+LTA A+DF+V+ LV
Sbjct:   38 GGGVLSLPFALQRAGLIPGLALLVLTALASDFSVYILV 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81394.19481.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW38_ECTSI8.970e-1294.74Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA8.510e-665.79Transmembrane amino acid transporter protein-domai... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 1..38
e-value: 8.0E-7
score: 28.1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81394contigEcto-sp13_S_contig81394:65..181 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81394.19481.1mRNA_Ecto-sp13_S_contig81394.19481.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig81394 65..181 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig81394.19481.1 ID=prot_Ecto-sp13_S_contig81394.19481.1|Name=mRNA_Ecto-sp13_S_contig81394.19481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
GGGVLSLPFALRRSGIVAGAILLLLTAFATDFTVFTLV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM