prot_Ecto-sp13_S_contig8122.19465.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8122.19465.1
Unique Nameprot_Ecto-sp13_S_contig8122.19465.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length94
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 2.870e-52
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:   13 PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 93
            PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE
Sbjct:  277 PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 357
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.930e-49
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0 
Query:   12 EPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 93
            EPPYA+MIRTALMKLPGRQGNL TVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE
Sbjct:  554 EPPYAEMIRTALMKLPGRQGNLATVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 635
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6S1_9PHAE2.870e-52100.00SGF29 C-terminal domain-containing protein n=1 Tax... [more]
D7FGV9_ECTSI4.930e-4997.56SGF29 C-terminal domain-containing protein n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 7..92
e-value: 1.4E-8
score: 36.6
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 13..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8122contigEcto-sp13_S_contig8122:267..2334 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8122.19465.1mRNA_Ecto-sp13_S_contig8122.19465.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8122 23..4035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8122.19465.1 ID=prot_Ecto-sp13_S_contig8122.19465.1|Name=mRNA_Ecto-sp13_S_contig8122.19465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MGGDEDEDDDDEPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNW
RSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf