mRNA_Ecto-sp13_S_contig8122.19465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE) HSP 1 Score: 250 bits (639), Expect = 5.230e-73 Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 2
Query: 2 VPKPAPGAERRIEVKFNDDADDTGRTPGRPLPARYVVPLPDGFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 523
VPKPAPGAERRIEVKFNDDADDTGRTPGR LPARYVVPLP+GFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE
Sbjct: 186 VPKPAPGAERRIEVKFNDDADDTGRTPGRSLPARYVVPLPEGFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 357
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI) HSP 1 Score: 247 bits (631), Expect = 8.870e-69 Identity = 170/178 (95.51%), Postives = 172/178 (96.63%), Query Frame = 2
Query: 2 VPKPAPGAERRIEVKFNDDADDTGRTPGRPLPARYVVPLPDGFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 523
VPKPAPGAERRIEVKFNDDADDTGRTPGRPLPARYVVPLP+GFEEDDSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPYA+MIRTALMKLPGRQGNL TVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE
Sbjct: 458 VPKPAPGAERRIEVKFNDDADDTGRTPGRPLPARYVVPLPEGFEEDDSKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPYAEMIRTALMKLPGRQGNLATVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCHAGTPERNVYTLVQVE 635
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: A0A7S2D9R3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9R3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.830e-14 Identity = 55/164 (33.54%), Postives = 75/164 (45.73%), Query Frame = 2
Query: 35 IEVKFNDDADDTGRTPGRPLPARYVVPLPDGFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHP-----MFCHAGTPERNVYTL 511
I V+F DD D+TGRTP R + ARYV+ D DDS Y+DMIR AL KLP +QGN+ +C+ IEE + + LNW+ ES +R+TP WK+S+R+ L FC +N++TL
Sbjct: 235 IYVQFEDDEDETGRTPHRRVIARYVILDQDQTGGDDSSVNDLEGNEWGEGDTKTVT----------------------------YSDMIRQALTKLPSQQGNIKDICSMIEEDYSDVLNWKIESDMRKTPVWKSSIRKILVQSQNTNTSRFCTLDE-NKNIFTL 369
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: A0A8J2SEZ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEZ6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.310e-12 Identity = 87/185 (47.03%), Postives = 107/185 (57.84%), Query Frame = 2
Query: 2 VPKPAPGAE--RRIEVKFNDDADDTGRTPGRPLPARYVVPLPDGFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPP-------------YADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMFCH-AGTPERNVYT 508
PK PG R + +KF DD DD+GRTP R + RYV+ E +K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P Y+DMI AL KLP G+ +C IE+ F E+LNW+ ES LR+TP WK+SVR+ L + F H ++N++T
Sbjct: 458 APKRGPGGSPPREVVLKFEDDEDDSGRTPHRRVSLRYVL-----RERPQAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGQAWADKASGGAPADADVAARPGGATYSDMIAHALKKLPDEHGDFKDICKVIEQDFFEQLNWKLESDLRKTPVWKSSVRKILYSNARFRHNLPAADKNIFT 637
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Match: A0A4D9CLS8_9STRA (SGF29 C-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 6.450e-7 Identity = 53/175 (30.29%), Postives = 69/175 (39.43%), Query Frame = 2
Query: 2 VPKPAPGAERRIEV--KFNDDADDTGRTPGRPLPARYVVPLPD--GFEEDDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWRSESSLRRTPAWKASVRRTLAHHP---MFCHAGTPERNVY 505
VPK A G +EV KF DD D+TGRTP R +PAR+V+ L FE + Y MI AL KLP +G L + IE F + L W+ E +R P WK+ VR+ L + MF +AG + Y
Sbjct: 325 VPKRAQGGLGPLEVMVKFEDDEDETGRTPHRRVPARHVLKLSQVGRFEAANGMGRDGEDIGDGGGRKGLRD----------------------------YKIMISHALQKLPNSKGTLKEIFKIIENDFRDELQWKMEGDGKRGPIWKSQVRKLLVNPRSGFMFINAGGERGSQY 471 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8122.19465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8122.19465.1 >prot_Ecto-sp13_S_contig8122.19465.1 ID=prot_Ecto-sp13_S_contig8122.19465.1|Name=mRNA_Ecto-sp13_S_contig8122.19465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp MGGDEDEDDDDEPPYADMIRTALMKLPGRQGNLPTVCAYIEEHFHERLNWback to top mRNA from alignment at Ecto-sp13_S_contig8122:23..4035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8122.19465.1 ID=mRNA_Ecto-sp13_S_contig8122.19465.1|Name=mRNA_Ecto-sp13_S_contig8122.19465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8122:23..4035+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8122:23..4035+ >mRNA_Ecto-sp13_S_contig8122.19465.1 ID=mRNA_Ecto-sp13_S_contig8122.19465.1|Name=mRNA_Ecto-sp13_S_contig8122.19465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8122:23..4035+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |