mRNA_Ecto-sp13_S_contig8103.19448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8103.19448.1
Unique NamemRNA_Ecto-sp13_S_contig8103.19448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: A0A6H5JFW1_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.080e-58
Identity = 91/102 (89.22%), Postives = 98/102 (96.08%), Query Frame = 1
Query:    1 AGLLSGSSFFYDKHLKLIESLEATQEGTIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQNDAFDDTWVPFESACFG 306
            AGLLSGSSFFYDKHL+LIE+LEATQE T+AGYTA+ SEDIFHEALRV+CTPSV+GTSYEATSTIDPIFWVIHPTIERLWQLRRLQ+DAFDDTWVP ES CFG
Sbjct:  342 AGLLSGSSFFYDKHLELIENLEATQEDTLAGYTAQESEDIFHEALRVMCTPSVEGTSYEATSTIDPIFWVIHPTIERLWQLRRLQDDAFDDTWVPSESVCFG 443          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: D7FSM9_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.930e-55
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = 1
Query:    1 AGLLSGSSFFYDKHLKLIESLEA-TQEGTIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQNDAFDDTWVPFESACFG 306
            AGLLSGSSFFYDKHLKLIE+L+A TQEGT+AGYTAE SEDIFHEALRV+CTPSV GT YEATSTIDPIFWVIHPTIERLWQLRRLQ+D FDDTWVP ES CFG
Sbjct:  485 AGLLSGSSFFYDKHLKLIENLDAATQEGTLAGYTAEESEDIFHEALRVMCTPSVVGTFYEATSTIDPIFWVIHPTIERLWQLRRLQDDTFDDTWVPSESVCFG 587          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: A0A6H5KKI9_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.980e-22
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 AGLLSGSSFFYDKHLKLIESL---EATQEGTIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQ----ND-AFDDTWVPFESACFG 306
            AG+L+   FFYDK+  LI+ L   +      + GYT E +  I+ E LR +C P   GT Y ATST DP FW+IHPT +RLW LRRLQ    ND AFD+TW+P +  C+G
Sbjct:  587 AGVLA-DGFFYDKNGVLIKDLVDNDGNAFDILPGYTKEETVQIYDEMLRALCIPMRVGTHYGATSTNDPTFWLIHPTFDRLWHLRRLQVKAENDTAFDETWIP-DHFCYG 694          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.430e-20
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 AGLLSGSSFFYDKHLKLIESL---EATQEGTIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQ-----NDAFDDTWVPFESACFG 306
            AG+L+   FFYDK   LIE L   +      + GYT   +  I+ E LR +C P   GT Y ATST DP FW+IHPT +RLW LRRL+     +  FD+TW+P +  C+G
Sbjct:  394 AGVLA-EGFFYDKDGVLIEDLVDSDGNAFDILPGYTKGETVQIYDEMLRALCIPMRVGTHYGATSTNDPTFWLIHPTFDRLWHLRRLEVMSKDDTVFDETWIP-DHFCYG 501          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.550e-20
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 AGLLSGSS--FFYDKHLKLIESLEATQ---EGTIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQN---DAFDDTWVPFESACFG 306
            +G+LS ++  FFYD+ LKL+++L   Q      I GYTA+ ++ IF E LR++ TP   G+ YE TST D  FWV+HPT++RLW L RL++   + FD+TW   +  C+G
Sbjct:  397 SGVLSDAAGAFFYDEDLKLVDNLTDEQGHAHDRIPGYTADETKGIFTEMLRLLSTPMRIGSHYEGTSTNDVTFWVLHPTMDRLWHLNRLEDVNGEGFDETWRD-DHFCYG 505          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: D7FNR4_ECTSI (Tyrosinase-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.620e-15
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 AGLLSGSSFFYDKHLKLIESLEATQEG---TIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQNDAFDDTWVPF 288
            +G+L   S+ YD   +LI S +        T+ GY+ E S  I+ + + ++C+P   GT ++ATST D  FWV+HP+++RLW L+RL ++ F++TW  F
Sbjct:  490 SGVLDSVSY-YDSTGELISSFKDENGDVLYTLPGYSEEESTQIYQQLMYLLCSPGHIGTMFQATSTNDITFWVLHPSVDRLWHLKRLGSEEFNETWDSF 587          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: A0A6H5K6J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.780e-15
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   85 IAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQND-AFDDTWVPFESACFG 306
            I GY+AE S  I+      +C P+  G+ +EATST D  FWV+HPT +RLW L RL+ D  F++TW+  +S C G
Sbjct:   59 IPGYSAEESTAIYQGLKDALCIPTKVGSHFEATSTNDVTFWVLHPTFDRLWHLSRLEQDPVFNETWIS-DSTCVG 132          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.670e-14
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    4 GLLSGSSFFYDKHLKLIESLEATQEG----TIAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRL-QNDAFDDTWVPFESACFG 306
            G +  + +FYD   +L+  L A  +G     I  Y+AE S  I+      +C P+  G+ +EATST D  FWV+HPT +RLW L  L QN  F++TW+  +S C G
Sbjct:  571 GDVIATGYFYDADYQLVLEL-ADSDGHYYEEIPSYSAEESTAIYEGLKDALCIPTKVGSHFEATSTNDVTFWVLHPTFDRLWHLSLLEQNPGFNETWIS-DSTCVG 674          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.350e-13
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   85 IAGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRL-QNDAFDDTWVPFESACFG 306
            I  Y+AE S  I+      +C P+  G+ +EATST D  FWV+HPT +RLW L RL QN  F++TW+  +S C G
Sbjct:  502 IPNYSAEESTAIYEGLKDALCIPTKVGSHFEATSTNDVTFWVLHPTFDRLWHLSRLEQNPVFNETWIS-DSTCVG 575          
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Match: A0A7S0SRE9_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRE9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.060e-13
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   19 SSFFYDKHLKLIESLEATQEGTI----AGYTAEVSEDIFHEALRVICTPSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQNDA----FDDTWVPFESACFG 306
            S  F+DK+   I S +     ++     GYT + S  IF   + ++C+P   G  ++ATST D  FWV+HPT++RLW   RL  +     FDDTW   E  C G
Sbjct:  310 SLVFFDKNGNEITSWQNKTSKSLYDVLPGYTIDESNAIFQRIMDILCSPGHIGDMFQATSTNDVTFWVLHPTLDRLWHRLRLNANNGVIDFDDTWPDSEQTCNG 413          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8103.19448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFW1_9PHAE3.080e-5889.22TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FSM9_ECTSI7.930e-5588.35Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KKI9_9PHAE9.980e-2249.09TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G1K2_ECTSI5.430e-2045.45Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]
D7FSN5_ECTSI5.550e-2044.55Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
D7FNR4_ECTSI1.620e-1538.38Tyrosinase-like protein 2 n=1 Tax=Ectocarpus silic... [more]
A0A6H5K6J0_9PHAE8.780e-1546.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC5_9PHAE3.670e-1439.62TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LAY9_ECTSI2.350e-1346.67Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A7S0SRE9_9STRA3.060e-1337.50Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8103contigEcto-sp13_S_contig8103:4148..5298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score193.0
Seed ortholog evalue7e-47
Seed eggNOG ortholog2880.D7FSM9
Model size309
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2CZRH@1,2SBDH@2759
Ec32 ortholog descriptionUncharacterised domain, di-copper centre
Ec32 orthologEc-07_002460.1
Cds size306
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.4394348-CDS-Ecto-sp13_S_contig8103:4149..42251681464083.4394348-CDS-Ecto-sp13_S_contig8103:4149..4225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8103 4150..4225 -
1681464083.4525657-CDS-Ecto-sp13_S_contig8103:4691..48431681464083.4525657-CDS-Ecto-sp13_S_contig8103:4691..4843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8103 4692..4843 -
1681464083.4645889-CDS-Ecto-sp13_S_contig8103:5220..52981681464083.4645889-CDS-Ecto-sp13_S_contig8103:5220..5298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8103 5221..5298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8103.19448.1prot_Ecto-sp13_S_contig8103.19448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8103 4150..5298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8103.19448.1

>prot_Ecto-sp13_S_contig8103.19448.1 ID=prot_Ecto-sp13_S_contig8103.19448.1|Name=mRNA_Ecto-sp13_S_contig8103.19448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
AGLLSGSSFFYDKHLKLIESLEATQEGTIAGYTAEVSEDIFHEALRVICT
PSVQGTSYEATSTIDPIFWVIHPTIERLWQLRRLQNDAFDDTWVPFESAC
FG
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mRNA from alignment at Ecto-sp13_S_contig8103:4148..5298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8103.19448.1 ID=mRNA_Ecto-sp13_S_contig8103.19448.1|Name=mRNA_Ecto-sp13_S_contig8103.19448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8103:4148..5298- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGCTGCTGTCCGGATCGTCTTTTTTCTACGACAAACACCTCAAGCT GATCGAAAGTCTTGAAGCTACACAAGAGGTGAGAGACACGAATCTATTTT GCCAGCACCAGAGAATCAGTCTCGTAGCAACGGTACACCAGGTTATCATG TGGTTTGTGTCAACGCATGACAGTCTCAAGCGCGCGCGTTGGAAGAGTAC GAGGAGAGAAGTTTTTCGGGTGGTCGTTCTAGCCTCGTGGCGGACGCGGG GAAGGTGCGGGTGTTGACGCGGTGCAGCGGTCGGACGCAACAAGGTGGAA AGAGTCTCTGCTGCTGTTCTCTAGGTGGCCGAGAGGGGTTGAGCATGTCA TCGGCAAAGCAGGTGGTGAGGAGAAACCGCCGAGGGTCGCATTGCTGAAG AAATGACTGGTCGCTCACGCTGCTTTCGCCTCTCTCGCACCTTCACCACC GAAAGGGTACGATCGCGGGCTACACGGCAGAAGTGTCCGAGGACATCTTC CACGAAGCGCTTCGCGTCATCTGCACCCCTTCCGTGCAAGGAACATCCTA CGAGGCGACCAGCACCATAGACCCCATTTTCTGGGTCATTCACCCCACCA TCGAGAGGTAAACGCAAGAAAGTGTGGTAGTGGGTTGAAGCTGTGCCGTG TGGTGTGGGATATGACTACGGCTTGGACAACCTTGTGTTTGTTGGGGTTG GACTGGAGGCGGGCCCATACCTTACTGCCAGTTGCTGATGGCCAAACTTA CGCTTCGCCAGCACGGCTGAAACCCGACGCCGCTTGGAAAAGTGGCATCC ACGCGCAGTACAATCCTGTGTGCCCAAGGGTGAGCCAGACGGGCTGTGGC TTGCAGTGGAGCCTTCCTCAGGTGATGACGCTGCCCCGAGTAGCATGGAG ATGGAAAAGCTTAAATTGCGGGTACGTAACCGTTTTGTTTGTCAGACGGC CTGGATGCCCCTAAGATCCCCCAACGGAGGCCCGACTCCCACTTCACTCC TGCGGCGTCCCCTGGCTTTCTCGCCCGATCACCATTGTCTGTCCTGCCAC TTCGACCCACATCCGACGTCCAGGCTTTGGCAACTTCGCAGGCTGCAGAA CGACGCCTTCGACGACACCTGGGTGCCTTTCGAGTCTGCCTGCTTCGGAA A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8103:4148..5298-

>mRNA_Ecto-sp13_S_contig8103.19448.1 ID=mRNA_Ecto-sp13_S_contig8103.19448.1|Name=mRNA_Ecto-sp13_S_contig8103.19448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8103:4148..5298- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGCTGCTGTCCGGATCGTCTTTTTTCTACGACAAACACCTCAAGCT
GATCGAAAGTCTTGAAGCTACACAAGAGGGTACGATCGCGGGCTACACGG
CAGAAGTGTCCGAGGACATCTTCCACGAAGCGCTTCGCGTCATCTGCACC
CCTTCCGTGCAAGGAACATCCTACGAGGCGACCAGCACCATAGACCCCAT
TTTCTGGGTCATTCACCCCACCATCGAGAGGCTTTGGCAACTTCGCAGGC
TGCAGAACGACGCCTTCGACGACACCTGGGTGCCTTTCGAGTCTGCCTGC
TTCGGA
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